Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0004077

Physical Location & Seq

Genomic Coordinates Forward (+)

30725847 .. 30730178

Gene Structure 4332 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028960

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGGGAACAGCTGTTAACGCTGCCAACAAGGAGGCTAATCGAAGCTTAGCCGATCTGAATCCTACTGTTGTTTTCGTCTTGGGTGGCCCAGGCAGTGGAAAGGGTACCCAATGCGCAAACATTGTTCAGCACTTTGGGTTTACACATCTGAGTGCTGGTGATCTTCTACGAGCAGAAATCAAGTCTGGTTCTGAAAATGGAACCATGATTTCGAACATGATAAAAGAAGGAAAAATTGTTCCTTCGGAAGTAACAATTAAGCTTCTCCAGAAAGCAATGCTGGAGAGTGGTAATGACAAATTTCTTATCGATGGGTTTCCTCGTAATGAAGAAAACCGTTCTGCATTTGAGGCTGTGACTAAAGTTGAGCCTTCATTTGTCCTGTTTTTTGATTGTTCTGAAGAAGAGATGGAGAGGCGCCTTTTGAGTAGGAACCAGGGAAGAGAAGATGATAACATAGAAACAATAAGGAAGCGGTTTAAGGTTTTTCTAGAGTCTAGTCTCCCGGTGATAGAATACTATAACTCCAACGGGAAAGTTCGGAAGATTGATGCTGGAAGGCCTGTTGAAGAAGTTTATGAGTCAGTAAAAGCCATTTTTGCCCCGAAAGATGAGAAGATTGATGCTGGAAGACCTGTTGAAGAGGTTTTTGAGTCAGTTAAAGCCAATTTTGCCCCGGAAAATGAGAAGGCTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00240 ko00983 ko01100 map00240 map00983 map01100

Pfam Domains

Protein Families

ADK

Protein Analysis

233

Amino Acids

25.69

Weight (kDa)

5.17

Isoelectric Point (pI)

44.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_33	PF13671	23 - 158	4e-06	AAA domain
AAA_18	PF13238	24 - 150	1.2e-08	AAA domain
ADK	PF00406	26 - 178	3.9e-48	Adenylate kinase
AAA_17	PF13207	27 - 157	2.6e-37	AAA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004077)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60180 AT3G60180 AT5G26667 AT5G26667 AT5G26667 AT5G26667
fragaria_vesca	FvH4_6g07810 FvH4_6g07810 FvH4_6g07810
malus_domestica	MD04G1062600.v1.1 MD07G1087100.v1.1
prunus_persica	Prupe.2G114000_v2.0.a1 Prupe.2G114000_v2.0.a1 Prupe.2G114000_v2.0.a1 Prupe.2G114000_v2.0.a1
pyrus_communis	pycom04g05600
rosa_chinensis	RchiOBHm_Chr1g0343601 RchiOBHm_Chr3g0457521
rosa_laevigata	RLG00000028960
rosa_multiflora	Rmu_sc0000335.1_g000002 Rmu_sc0001290.1_g000001 Rmu_sc0007404.1_g000013 Rmu_sc0007404.1_g000014
rosa_roxburghii	Rroxscaffold_4G00310450 Rroxscaffold_6G00421800
rosa_rugosa	Rorug01G0167700 Rorug03G0020700
rosa_samantha	Rh1AG183900 Rh3BG083600 Rh3CG083800 Rh3DG085200
rosa_wichuraiana	Rw1G015230 Rw3G006990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	115
Acc65I	GGTACC	1 cut(s)	104
AccB1I	GGYRCC	2 cut(s)	104, 417
AccB7I	CCANNNNNTGG	1 cut(s)	95
AciI	CCGC	1 cut(s)	475
AcsI	RAATTY	1 cut(s)	299
AcuI	CTGAAG	1 cut(s)	420
AcyI	GRCGYC	1 cut(s)	418
AfaI	GTAC	1 cut(s)	106
AfiI	CCNNNNNNNGG	1 cut(s)	95
AgsI	TTSAA	2 cut(s)	569, 641
AjnI	CCWGG	2 cut(s)	88, 435
AloI	GAACNNNNNNTCC	2 cut(s)	222, 254
AluBI	AGCT	3 cut(s)	11, 45, 262
AluI	AGCT	3 cut(s)	11, 45, 262
Alw26I	GTCTC	1 cut(s)	506
AoxI	GGCC	2 cut(s)	85, 560
ApeKI	GCWGC	1 cut(s)	20
ApoI	RAATTY	1 cut(s)	299
Asp718I	GGTACC	1 cut(s)	104
AspLEI	GCGC	2 cut(s)	116, 420
AspS9I	GGNCC	1 cut(s)	86
AsuC2I	CCSGG	2 cut(s)	506, 677
AsuHPI	GGTGA	2 cut(s)	170, 520
AsuII	TTCGAA	1 cut(s)	212
BanI	GGYRCC	2 cut(s)	104, 417
BbsI	GAAGAC	1 cut(s)	637
BbvI	GCAGC	1 cut(s)	7
BccI	CCATC	2 cut(s)	305, 403
BciT130I	CCWGG	2 cut(s)	90, 437
BcnI	CCSGG	2 cut(s)	506, 677
BcoDI	GTCTC	1 cut(s)	506
BfaI	CTAG	2 cut(s)	491, 498
BfoI	RGCGCY	1 cut(s)	421
BisI	GCNGC	1 cut(s)	21
BlpI	GCTNAGC	1 cut(s)	46
BlsI	GCNGC	1 cut(s)	22
Bme1390I	CCNGG	4 cut(s)	90, 437, 506, 677
BmgT120I	GGNCC	1 cut(s)	86
BmiI	GGNNCC	4 cut(s)	106, 202, 419, 434
BmrFI	CCNGG	4 cut(s)	90, 437, 506, 677
BmsI	GCATC	2 cut(s)	541, 613
BpiI	GAAGAC	1 cut(s)	637
BpmI	CTGGAG	2 cut(s)	251, 302
Bpu1102I	GCTNAGC	1 cut(s)	46
Bpu14I	TTCGAA	1 cut(s)	212
BpuMI	CCSGG	2 cut(s)	506, 677
Bsa29I	ATCGAT	1 cut(s)	309
BsaBI	GATNNNNATC	1 cut(s)	57
BsaHI	GRCGYC	1 cut(s)	418
BsaJI	CCNNGG	3 cut(s)	88, 436, 675
BsaXI	ACNNNNNCTCC	2 cut(s)	509, 539
Bsc4I	CCNNNNNNNGG	1 cut(s)	95
Bse3DI	GCAATG	1 cut(s)	282
Bse8I	GATNNNNATC	1 cut(s)	57
BseBI	CCWGG	2 cut(s)	90, 437
BseCI	ATCGAT	1 cut(s)	309
BseDI	CCNNGG	3 cut(s)	88, 436, 675
BseJI	GATNNNNATC	1 cut(s)	57
BseLI	CCNNNNNNNGG	1 cut(s)	95
BseMI	GCAATG	1 cut(s)	282
BseMII	CTCAG	1 cut(s)	140
BseXI	GCAGC	1 cut(s)	7
BshFI	GGCC	2 cut(s)	87, 562
BshNI	GGYRCC	2 cut(s)	104, 417
BshVI	ATCGAT	1 cut(s)	309
BsiSI	CCGG	2 cut(s)	506, 677
BslI	CCNNNNNNNGG	1 cut(s)	95
BsmAI	GTCTC	1 cut(s)	506
BsnI	GGCC	2 cut(s)	87, 562
Bsp119I	TTCGAA	1 cut(s)	212
Bsp143I	GATC	2 cut(s)	52, 160
Bsp1720I	GCTNAGC	1 cut(s)	46
BspACI	CCGC	1 cut(s)	475
BspANI	GGCC	2 cut(s)	87, 562
BspCNI	CTCAG	1 cut(s)	141
BspDI	ATCGAT	1 cut(s)	309
BspLI	GGNNCC	4 cut(s)	106, 202, 419, 434
BspT104I	TTCGAA	1 cut(s)	212
BspT107I	GGYRCC	2 cut(s)	104, 417
BsrDI	GCAATG	1 cut(s)	282
BssECI	CCNNGG	3 cut(s)	88, 436, 675
BssMI	GATC	2 cut(s)	52, 160
BssNI	GRCGYC	1 cut(s)	418
Bst2UI	CCWGG	2 cut(s)	90, 437
Bst4CI	ACNGT	2 cut(s)	67, 338
Bst6I	CTCTTC	3 cut(s)	399, 436, 636
BstACI	GRCGYC	1 cut(s)	418
BstBI	TTCGAA	1 cut(s)	212
BstDEI	CTNAG	2 cut(s)	46, 149
BstH2I	RGCGCY	1 cut(s)	421
BstHHI	GCGC	2 cut(s)	116, 420
BstKTI	GATC	2 cut(s)	55, 163
BstMAI	GTCTC	1 cut(s)	506
BstMBI	GATC	2 cut(s)	52, 160
BstMWI	GCNNNNNNNGC	4 cut(s)	17, 350, 599, 671
BstNI	CCWGG	2 cut(s)	90, 437
BstSCI	CCNGG	4 cut(s)	88, 435, 504, 675
BstV1I	GCAGC	1 cut(s)	7
BstV2I	GAAGAC	1 cut(s)	637
Bsu15I	ATCGAT	1 cut(s)	309
BsuRI	GGCC	2 cut(s)	87, 562
BsuTUI	ATCGAT	1 cut(s)	309
BtsI	GCAGTG	1 cut(s)	100
BtsIMutI	CAGTG	1 cut(s)	100
CfoI	GCGC	2 cut(s)	116, 420
Cfr13I	GGNCC	1 cut(s)	86
ClaI	ATCGAT	1 cut(s)	309
Csp6I	GTAC	1 cut(s)	105
CviAII	CATG	2 cut(s)	205, 217
CviQI	GTAC	1 cut(s)	105
DdeI	CTNAG	2 cut(s)	46, 149
DinI	GGCGCC	1 cut(s)	419
DpnI	GATC	2 cut(s)	54, 162
DpnII	GATC	2 cut(s)	52, 160
Eam1104I	CTCTTC	3 cut(s)	399, 436, 636
EarI	CTCTTC	3 cut(s)	399, 436, 636
Eco147I	AGGCCT	1 cut(s)	562
Eco57I	CTGAAG	1 cut(s)	420
EcoRII	CCWGG	2 cut(s)	88, 435
EgeI	GGCGCC	1 cut(s)	419
EheI	GGCGCC	1 cut(s)	419
FaeI	CATG	2 cut(s)	208, 220
FaiI	YATR	5 cut(s)	206, 218, 458, 522, 579
FatI	CATG	2 cut(s)	204, 216
Fnu4HI	GCNGC	1 cut(s)	21
Fsp4HI	GCNGC	1 cut(s)	21
FspBI	CTAG	2 cut(s)	491, 498
FspI	TGCGCA	1 cut(s)	115
GlaI	GCGC	2 cut(s)	115, 419
GluI	GCNGC	1 cut(s)	21
GsuI	CTGGAG	2 cut(s)	251, 302
HaeII	RGCGCY	1 cut(s)	421
HaeIII	GGCC	2 cut(s)	87, 562
HapII	CCGG	2 cut(s)	506, 677
HhaI	GCGC	2 cut(s)	116, 420
Hin1I	GRCGYC	1 cut(s)	418
Hin1II	CATG	2 cut(s)	208, 220
Hin6I	GCGC	2 cut(s)	114, 418
HinP1I	GCGC	2 cut(s)	114, 418
HincII	GTYRAC	1 cut(s)	16
HindII	GTYRAC	1 cut(s)	16
HindIII	AAGCTT	2 cut(s)	43, 260
HinfI	GANTC	4 cut(s)	58, 494, 581, 653
HpaI	GTTAAC	1 cut(s)	16
HpaII	CCGG	2 cut(s)	506, 677
HphI	GGTGA	2 cut(s)	170, 520
Hpy166II	GTNNAC	2 cut(s)	16, 141
Hpy188I	TCNGA	6 cut(s)	57, 150, 193, 247, 400, 543
Hpy188III	TCNNGA	2 cut(s)	268, 491
Hpy8I	GTNNAC	2 cut(s)	16, 141
HpyAV	CCTTC	5 cut(s)	221, 252, 381, 552, 682
HpyCH4III	ACNGT	2 cut(s)	67, 338
HpyCH4V	TGCA	1 cut(s)	344
HpyF10VI	GCNNNNNNNGC	4 cut(s)	17, 350, 599, 671
HpyF3I	CTNAG	2 cut(s)	46, 149
Hsp92I	GRCGYC	1 cut(s)	418
Hsp92II	CATG	2 cut(s)	208, 220
HspAI	GCGC	2 cut(s)	114, 418
KasI	GGCGCC	1 cut(s)	417
KpnI	GGTACC	1 cut(s)	108
KspAI	GTTAAC	1 cut(s)	16
Kzo9I	GATC	2 cut(s)	52, 160
Lsp1109I	GCAGC	1 cut(s)	7
LweI	GCATC	2 cut(s)	541, 613
MaeI	CTAG	2 cut(s)	491, 498
MaeIII	GTNAC	2 cut(s)	250, 355
MalI	GATC	2 cut(s)	54, 162
MboI	GATC	2 cut(s)	52, 160
MluCI	AATT	4 cut(s)	234, 255, 299, 667
Mly113I	GGCGCC	1 cut(s)	418
MlyI	GAGTC	3 cut(s)	503, 590, 662
MmeI	TCCRAC	1 cut(s)	552
MnlI	CCTC	5 cut(s)	25, 330, 343, 408, 637
MseI	TTAA	5 cut(s)	15, 258, 480, 660, 697
MslI	CAYNNNNRTG	1 cut(s)	150
MspA1I	CMGCKG	1 cut(s)	11
MspI	CCGG	2 cut(s)	506, 677
MspR9I	CCNGG	4 cut(s)	90, 437, 506, 677
MvaI	CCWGG	2 cut(s)	90, 437
MwoI	GCNNNNNNNGC	4 cut(s)	17, 350, 599, 671
NarI	GGCGCC	1 cut(s)	418
NciI	CCSGG	2 cut(s)	506, 677
NdeII	GATC	2 cut(s)	52, 160
NlaIII	CATG	2 cut(s)	208, 220
NlaIV	GGNNCC	4 cut(s)	106, 202, 419, 434
NmuCI	GTSAC	1 cut(s)	355
NsbI	TGCGCA	1 cut(s)	115
NspV	TTCGAA	1 cut(s)	212
PceI	AGGCCT	1 cut(s)	562
PfeI	GAWTC	1 cut(s)	58
PflMI	CCANNNNNTGG	1 cut(s)	95
PkrI	GCNGC	1 cut(s)	22
PleI	GAGTC	3 cut(s)	502, 589, 661
PluTI	GGCGCC	1 cut(s)	421
PpsI	GAGTC	3 cut(s)	502, 589, 661
Psp6I	CCWGG	2 cut(s)	88, 435
PspGI	CCWGG	2 cut(s)	88, 435
PspN4I	GGNNCC	4 cut(s)	106, 202, 419, 434
PspPI	GGNCC	1 cut(s)	86
PvuII	CAGCTG	1 cut(s)	11
RsaI	GTAC	1 cut(s)	106
RsaNI	GTAC	1 cut(s)	105
RseI	CAYNNNNRTG	1 cut(s)	150
SaqAI	TTAA	5 cut(s)	15, 258, 480, 660, 697
SatI	GCNGC	1 cut(s)	21
Sau3AI	GATC	2 cut(s)	52, 160
Sau96I	GGNCC	1 cut(s)	86
SchI	GAGTC	3 cut(s)	503, 590, 662
ScrFI	CCNGG	4 cut(s)	90, 437, 506, 677
SetI	ASST	6 cut(s)	13, 47, 264, 486, 637, 648
SfaNI	GCATC	2 cut(s)	541, 613
SfoI	GGCGCC	1 cut(s)	419
SfuI	TTCGAA	1 cut(s)	212
SmiMI	CAYNNNNRTG	1 cut(s)	150
Sse9I	AATT	4 cut(s)	234, 255, 299, 667
SseBI	AGGCCT	1 cut(s)	562
SsiI	CCGC	1 cut(s)	475
SspDI	GGCGCC	1 cut(s)	417
SspMI	CTAG	2 cut(s)	491, 498
StuI	AGGCCT	1 cut(s)	562
StyD4I	CCNGG	4 cut(s)	88, 435, 504, 675
TaaI	ACNGT	2 cut(s)	67, 338
TaqI	TCGA	3 cut(s)	40, 212, 309
TasI	AATT	4 cut(s)	234, 255, 299, 667
TfiI	GAWTC	1 cut(s)	58
Tru1I	TTAA	5 cut(s)	15, 258, 480, 660, 697
Tru9I	TTAA	5 cut(s)	15, 258, 480, 660, 697
TscAI	CASTG	1 cut(s)	100
TseFI	GTSAC	1 cut(s)	355
TseI	GCWGC	1 cut(s)	20
Tsp45I	GTSAC	1 cut(s)	355
TspDTI	ATGAA	2 cut(s)	342, 363
TspRI	CASTG	1 cut(s)	100
Van91I	CCANNNNNTGG	1 cut(s)	95
XapI	RAATTY	1 cut(s)	299
XbaI	TCTAGA	1 cut(s)	490
XspI	CTAG	2 cut(s)	491, 498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.