Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0004077

Physical Location & Seq

Genomic Coordinates Reverse (-)

8226122 .. 8230614

Gene Structure 4493 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1062600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGGGTGAAGTTGTTGATGCCGGAAAGAAGGAGGCTAATGGAAGCTTAGCTGATCTGAACCCTACAGTTGTTTTTGTCTTGGGTGGCCCAGGCAGCGGAAAGGGTACTCAATGTGCAAACATTGTTCAGCACTTTGGGTTTACCCATCTCAGTGCTGGCGATCTTCTTAGAGCCGAAATCAAATCTGGCTCTGAAAATGGGACCATGATTTCGAACATGATTAAGGAAGGAAAGATTGTTCCTTCTGAAGTAACAATTAAACTTCTTGAACGAGCAATGCTGGAAAATGGTAACGACAAGTTTCTCATTGATGGGTTTCCCCGTAATGAGGAAAATCGTGCTGCATTTGAGGCTGTGACTAAAATCGAGCCTTCATTTGTCTTGTTTTTTGACTGTTCTGATGAAGAGATGGAGAGGCGGCTTTTGGGTAGGAACCAGGGAAGAGAGGATGATAACATAGAAACAATAAGGAAGCGGTTTAAGGTTTTCCAAGATTCTAGTCTCCCTGTGATAGAGTACTACAACTCCAAGGGGAAAGTTCGGAAGATTGATGCTGGAAGGCCTGTTGAAGAGGTTTATGAGTCCGTTAAAGCTATTTTTGAACCGAAAAATGAGAAGGCTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00240 ko00983 ko01100 map00240 map00983 map01100

Pfam Domains

Protein Families

ADK

Protein Analysis

209

Amino Acids

23.08

Weight (kDa)

5.22

Isoelectric Point (pI)

32.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_33	PF13671	23 - 160	2.6e-06	AAA domain
AAA_18	PF13238	24 - 151	7e-09	AAA domain
ADK	PF00406	26 - 178	3.9e-49	Adenylate kinase
AAA_17	PF13207	27 - 157	4.4e-37	AAA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004077)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60180 AT3G60180 AT5G26667 AT5G26667 AT5G26667 AT5G26667
fragaria_vesca	FvH4_6g07810 FvH4_6g07810 FvH4_6g07810
malus_domestica	MD04G1062600.v1.1 MD07G1087100.v1.1
prunus_persica	Prupe.2G114000_v2.0.a1 Prupe.2G114000_v2.0.a1 Prupe.2G114000_v2.0.a1 Prupe.2G114000_v2.0.a1
pyrus_communis	pycom04g05600
rosa_chinensis	RchiOBHm_Chr1g0343601 RchiOBHm_Chr3g0457521
rosa_laevigata	RLG00000028960
rosa_multiflora	Rmu_sc0000335.1_g000002 Rmu_sc0001290.1_g000001 Rmu_sc0007404.1_g000013 Rmu_sc0007404.1_g000014
rosa_roxburghii	Rroxscaffold_4G00310450 Rroxscaffold_6G00421800
rosa_rugosa	Rorug01G0167700 Rorug03G0020700
rosa_samantha	Rh1AG183900 Rh3BG083600 Rh3CG083800 Rh3DG085200
rosa_wichuraiana	Rw1G015230 Rw3G006990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	96, 418, 475
AcuI	CTGAAG	1 cut(s)	267
AfaI	GTAC	2 cut(s)	106, 518
AfiI	CCNNNNNNNGG	2 cut(s)	95, 328
AgsI	TTSAA	3 cut(s)	269, 569, 602
AjnI	CCWGG	2 cut(s)	88, 435
AloI	GAACNNNNNNTCC	2 cut(s)	222, 254
AluBI	AGCT	3 cut(s)	45, 50, 593
AluI	AGCT	3 cut(s)	45, 50, 593
Alw26I	GTCTC	1 cut(s)	506
AoxI	GGCC	2 cut(s)	85, 560
ApeKI	GCWGC	2 cut(s)	93, 341
ArsI	GACNNNNNNTTYG	2 cut(s)	193, 225
AspS9I	GGNCC	2 cut(s)	86, 201
AsuHPI	GGTGA	1 cut(s)	17
AsuII	TTCGAA	1 cut(s)	212
AvaII	GGWCC	1 cut(s)	201
BbvI	GCAGC	2 cut(s)	105, 328
BccI	CCATC	3 cut(s)	153, 305, 403
BciT130I	CCWGG	2 cut(s)	90, 437
BcoDI	GTCTC	1 cut(s)	506
BfaI	CTAG	1 cut(s)	498
BfmI	CTRYAG	1 cut(s)	63
BisI	GCNGC	3 cut(s)	94, 342, 419
BlpI	GCTNAGC	1 cut(s)	46
BlsI	GCNGC	3 cut(s)	95, 343, 420
BmcAI	AGTACT	1 cut(s)	518
Bme1390I	CCNGG	2 cut(s)	90, 437
Bme18I	GGWCC	1 cut(s)	201
BmgT120I	GGNCC	2 cut(s)	86, 201
BmiI	GGNNCC	2 cut(s)	202, 434
BmrFI	CCNGG	2 cut(s)	90, 437
BmsI	GCATC	2 cut(s)	7, 541
Bpu1102I	GCTNAGC	1 cut(s)	46
Bpu14I	TTCGAA	1 cut(s)	212
BsaJI	CCNNGG	3 cut(s)	88, 436, 528
BsaXI	ACNNNNNCTCC	2 cut(s)	509, 539
Bsc4I	CCNNNNNNNGG	2 cut(s)	95, 328
Bse3DI	GCAATG	1 cut(s)	282
BseBI	CCWGG	2 cut(s)	90, 437
BseDI	CCNNGG	3 cut(s)	88, 436, 528
BseGI	GGATG	1 cut(s)	454
BseLI	CCNNNNNNNGG	2 cut(s)	95, 328
BseMI	GCAATG	1 cut(s)	282
BseMII	CTCAG	1 cut(s)	163
BseXI	GCAGC	2 cut(s)	105, 328
BshFI	GGCC	2 cut(s)	87, 562
BsiSI	CCGG	1 cut(s)	21
BslFI	GGGAC	1 cut(s)	214
BslI	CCNNNNNNNGG	2 cut(s)	95, 328
BsmAI	GTCTC	1 cut(s)	506
BsmFI	GGGAC	1 cut(s)	214
BsnI	GGCC	2 cut(s)	87, 562
Bsp119I	TTCGAA	1 cut(s)	212
Bsp143I	GATC	2 cut(s)	52, 160
Bsp1720I	GCTNAGC	1 cut(s)	46
BspACI	CCGC	3 cut(s)	96, 418, 475
BspANI	GGCC	2 cut(s)	87, 562
BspCNI	CTCAG	1 cut(s)	162
BspLI	GGNNCC	2 cut(s)	202, 434
BspT104I	TTCGAA	1 cut(s)	212
BsrDI	GCAATG	1 cut(s)	282
BssECI	CCNNGG	3 cut(s)	88, 436, 528
BssMI	GATC	2 cut(s)	52, 160
BssT1I	CCWWGG	1 cut(s)	528
Bst2UI	CCWGG	2 cut(s)	90, 437
Bst4CI	ACNGT	2 cut(s)	67, 395
Bst6I	CTCTTC	3 cut(s)	399, 436, 564
BstBI	TTCGAA	1 cut(s)	212
BstC8I	GCNNGC	1 cut(s)	157
BstDEI	CTNAG	3 cut(s)	46, 149, 167
BstF5I	GGATG	1 cut(s)	454
BstKTI	GATC	2 cut(s)	55, 163
BstMAI	GTCTC	1 cut(s)	506
BstMBI	GATC	2 cut(s)	52, 160
BstMWI	GCNNNNNNNGC	2 cut(s)	93, 350
BstNI	CCWGG	2 cut(s)	90, 437
BstSCI	CCNGG	2 cut(s)	88, 435
BstSFI	CTRYAG	1 cut(s)	63
BstV1I	GCAGC	2 cut(s)	105, 328
BsuRI	GGCC	2 cut(s)	87, 562
BtsCI	GGATG	1 cut(s)	454
BtsIMutI	CAGTG	1 cut(s)	157
Cac8I	GCNNGC	1 cut(s)	157
Cfr13I	GGNCC	2 cut(s)	86, 201
Csp6I	GTAC	2 cut(s)	105, 517
CviAII	CATG	2 cut(s)	205, 217
CviQI	GTAC	2 cut(s)	105, 517
DdeI	CTNAG	3 cut(s)	46, 149, 167
DpnI	GATC	2 cut(s)	54, 162
DpnII	GATC	2 cut(s)	52, 160
Eam1104I	CTCTTC	3 cut(s)	399, 436, 564
EarI	CTCTTC	3 cut(s)	399, 436, 564
Eco130I	CCWWGG	1 cut(s)	528
Eco147I	AGGCCT	1 cut(s)	562
Eco47I	GGWCC	1 cut(s)	201
Eco57I	CTGAAG	1 cut(s)	267
EcoRII	CCWGG	2 cut(s)	88, 435
EcoT14I	CCWWGG	1 cut(s)	528
ErhI	CCWWGG	1 cut(s)	528
FaeI	CATG	2 cut(s)	208, 220
FaiI	YATR	4 cut(s)	206, 218, 458, 579
FaqI	GGGAC	1 cut(s)	214
FatI	CATG	2 cut(s)	204, 216
Fnu4HI	GCNGC	3 cut(s)	94, 342, 419
FokI	GGATG	1 cut(s)	461
Fsp4HI	GCNGC	3 cut(s)	94, 342, 419
FspBI	CTAG	1 cut(s)	498
GluI	GCNGC	3 cut(s)	94, 342, 419
HaeIII	GGCC	2 cut(s)	87, 562
HapII	CCGG	1 cut(s)	21
Hin1II	CATG	2 cut(s)	208, 220
HindIII	AAGCTT	1 cut(s)	43
HinfI	GANTC	2 cut(s)	494, 581
HpaII	CCGG	1 cut(s)	21
HphI	GGTGA	1 cut(s)	17
Hpy166II	GTNNAC	1 cut(s)	141
Hpy188I	TCNGA	5 cut(s)	57, 193, 247, 400, 543
Hpy188III	TCNNGA	1 cut(s)	266
Hpy8I	GTNNAC	1 cut(s)	141
HpyAV	CCTTC	6 cut(s)	22, 221, 252, 381, 552, 610
HpyCH4III	ACNGT	2 cut(s)	67, 395
HpyCH4V	TGCA	2 cut(s)	116, 344
HpyF10VI	GCNNNNNNNGC	2 cut(s)	93, 350
HpyF3I	CTNAG	3 cut(s)	46, 149, 167
Hsp92II	CATG	2 cut(s)	208, 220
Kzo9I	GATC	2 cut(s)	52, 160
Lsp1109I	GCAGC	2 cut(s)	105, 328
LweI	GCATC	2 cut(s)	7, 541
MaeI	CTAG	1 cut(s)	498
MaeIII	GTNAC	3 cut(s)	250, 290, 355
MalI	GATC	2 cut(s)	54, 162
MboI	GATC	2 cut(s)	52, 160
MboII	GAAGA	5 cut(s)	155, 416, 453, 556, 581
MluCI	AATT	1 cut(s)	255
MlyI	GAGTC	1 cut(s)	590
MnlI	CCTC	6 cut(s)	25, 322, 343, 408, 439, 565
MseI	TTAA	5 cut(s)	222, 258, 480, 588, 625
MslI	CAYNNNNRTG	1 cut(s)	150
MspA1I	CMGCKG	1 cut(s)	96
MspI	CCGG	1 cut(s)	21
MspR9I	CCNGG	2 cut(s)	90, 437
MvaI	CCWGG	2 cut(s)	90, 437
MwoI	GCNNNNNNNGC	2 cut(s)	93, 350
NdeII	GATC	2 cut(s)	52, 160
NlaIII	CATG	2 cut(s)	208, 220
NlaIV	GGNNCC	2 cut(s)	202, 434
NmuCI	GTSAC	1 cut(s)	355
NspV	TTCGAA	1 cut(s)	212
PceI	AGGCCT	1 cut(s)	562
PfeI	GAWTC	1 cut(s)	494
PkrI	GCNGC	3 cut(s)	95, 343, 420
PleI	GAGTC	1 cut(s)	589
PpsI	GAGTC	1 cut(s)	589
Psp6I	CCWGG	2 cut(s)	88, 435
PspGI	CCWGG	2 cut(s)	88, 435
PspN4I	GGNNCC	2 cut(s)	202, 434
PspPI	GGNCC	2 cut(s)	86, 201
RsaI	GTAC	2 cut(s)	106, 518
RsaNI	GTAC	2 cut(s)	105, 517
RseI	CAYNNNNRTG	1 cut(s)	150
SaqAI	TTAA	5 cut(s)	222, 258, 480, 588, 625
SatI	GCNGC	3 cut(s)	94, 342, 419
Sau3AI	GATC	2 cut(s)	52, 160
Sau96I	GGNCC	2 cut(s)	86, 201
ScaI	AGTACT	1 cut(s)	518
SchI	GAGTC	1 cut(s)	590
ScrFI	CCNGG	2 cut(s)	90, 437
SetI	ASST	5 cut(s)	47, 52, 486, 576, 595
SfaNI	GCATC	2 cut(s)	7, 541
SfcI	CTRYAG	1 cut(s)	63
SfuI	TTCGAA	1 cut(s)	212
SinI	GGWCC	1 cut(s)	201
SmiMI	CAYNNNNRTG	1 cut(s)	150
Sse9I	AATT	1 cut(s)	255
SseBI	AGGCCT	1 cut(s)	562
SsiI	CCGC	3 cut(s)	96, 418, 475
SspMI	CTAG	1 cut(s)	498
StuI	AGGCCT	1 cut(s)	562
StyD4I	CCNGG	2 cut(s)	88, 435
StyI	CCWWGG	1 cut(s)	528
TaaI	ACNGT	2 cut(s)	67, 395
TaqI	TCGA	2 cut(s)	212, 366
TasI	AATT	1 cut(s)	255
TatI	WGTACW	1 cut(s)	516
TauI	GCSGC	1 cut(s)	421
TfiI	GAWTC	1 cut(s)	494
Tru1I	TTAA	5 cut(s)	222, 258, 480, 588, 625
Tru9I	TTAA	5 cut(s)	222, 258, 480, 588, 625
TscAI	CASTG	1 cut(s)	157
TseFI	GTSAC	1 cut(s)	355
TseI	GCWGC	2 cut(s)	93, 341
Tsp45I	GTSAC	1 cut(s)	355
TspDTI	ATGAA	2 cut(s)	363, 417
TspGWI	ACGGA	1 cut(s)	574
TspRI	CASTG	1 cut(s)	157
VpaK11BI	GGWCC	1 cut(s)	201
XcmI	CCANNNNNNNNNTGG	1 cut(s)	152
XspI	CTAG	1 cut(s)	498
ZrmI	AGTACT	1 cut(s)	518

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.