Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001290.1

Orthogroup ID

OG0004077

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 6020

Gene Structure 6020 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001290.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

atgggaacagttgttaacgctgccaacaaggaggctaatcgaagctttgccgatctgaatcctactgttgttttcgtcttgggtggcccaggcagtggaaagggtacccaatgcgcaaacattgttcagcactttgggtttacacatctgagtgctggtgatctactacgagcagaaatcaagtctggttctgaaaatggaaccatgattttgaacatgataaaagaaggaaaaattgttcctttggaagtaacaattaagcttctccagaaagcaatgctggagagtggtaatgacaaatttcttatcgatgggtttcctcgtaatgaagaaaaccgttctgcatttgaggctgtgactaaagtcgagccttcatttgtcctgttttttgattgttctgaagaagagatggagaggcgccttttgagtaggaaccagggaagagaagatgataacatagaaacaataaggaagcggtttaaggtttttctagagtctagtctcccaattgatgctggaaggcctgttgaagaggtttatgagtcagtaaaagccatttttgccccgaaagatgagaagggtattcctcctcaaccgaacaacaaggagtgcgggtactttgtcatgcgatacatgagagacatcattgaggataaagacttttcatttgttaacaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00240 ko00983 ko01100 map00240 map00983 map01100

Pfam Domains

Protein Families

ADK

Protein Analysis

226

Amino Acids

25.35

Weight (kDa)

5.32

Isoelectric Point (pI)

47.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004077)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60180 AT3G60180 AT5G26667 AT5G26667 AT5G26667 AT5G26667
fragaria_vesca	FvH4_6g07810 FvH4_6g07810 FvH4_6g07810
malus_domestica	MD04G1062600.v1.1 MD07G1087100.v1.1
prunus_persica	Prupe.2G114000_v2.0.a1 Prupe.2G114000_v2.0.a1 Prupe.2G114000_v2.0.a1 Prupe.2G114000_v2.0.a1
pyrus_communis	pycom04g05600
rosa_chinensis	RchiOBHm_Chr1g0343601 RchiOBHm_Chr3g0457521
rosa_laevigata	RLG00000028960
rosa_multiflora	Rmu_sc0000335.1_g000002 Rmu_sc0001290.1_g000001 Rmu_sc0007404.1_g000013 Rmu_sc0007404.1_g000014
rosa_roxburghii	Rroxscaffold_4G00310450 Rroxscaffold_6G00421800
rosa_rugosa	Rorug01G0167700 Rorug03G0020700
rosa_samantha	Rh1AG183900 Rh3BG083600 Rh3CG083800 Rh3DG085200
rosa_wichuraiana	Rw1G015230 Rw3G006990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	115
Acc65I	GGTACC	1 cut(s)	104
AccB1I	GGYRCC	2 cut(s)	104, 417
AccB7I	CCANNNNNTGG	1 cut(s)	95
AciI	CCGC	2 cut(s)	475, 612
AcsI	RAATTY	1 cut(s)	299
AcuI	CTGAAG	1 cut(s)	420
AcyI	GRCGYC	1 cut(s)	418
AfaI	GTAC	2 cut(s)	106, 617
AfiI	CCNNNNNNNGG	1 cut(s)	95
AgsI	TTSAA	2 cut(s)	214, 530
AjnI	CCWGG	2 cut(s)	88, 435
AloI	GAACNNNNNNTCC	2 cut(s)	222, 254
AluBI	AGCT	2 cut(s)	45, 262
AluI	AGCT	2 cut(s)	45, 262
Alw26I	GTCTC	2 cut(s)	506, 633
AoxI	GGCC	2 cut(s)	85, 521
ApeKI	GCWGC	1 cut(s)	20
ApoI	RAATTY	1 cut(s)	299
ArsI	GACNNNNNNTTYG	1 cut(s)	650
Asp718I	GGTACC	1 cut(s)	104
AspLEI	GCGC	2 cut(s)	116, 420
AspS9I	GGNCC	1 cut(s)	86
AsuHPI	GGTGA	1 cut(s)	170
BanI	GGYRCC	2 cut(s)	104, 417
BbvI	GCAGC	1 cut(s)	7
BccI	CCATC	2 cut(s)	305, 403
BciT130I	CCWGG	2 cut(s)	90, 437
BcoDI	GTCTC	2 cut(s)	506, 633
BfaI	CTAG	2 cut(s)	491, 498
BfoI	RGCGCY	1 cut(s)	421
BisI	GCNGC	1 cut(s)	21
BlsI	GCNGC	1 cut(s)	22
Bme1390I	CCNGG	2 cut(s)	90, 437
BmgT120I	GGNCC	1 cut(s)	86
BmiI	GGNNCC	4 cut(s)	106, 202, 419, 434
BmrFI	CCNGG	2 cut(s)	90, 437
BmsI	GCATC	1 cut(s)	502
BoxI	GACNNNNGTC	1 cut(s)	362
BpmI	CTGGAG	2 cut(s)	251, 302
Bsa29I	ATCGAT	1 cut(s)	309
BsaBI	GATNNNNATC	1 cut(s)	57
BsaHI	GRCGYC	1 cut(s)	418
BsaJI	CCNNGG	2 cut(s)	88, 436
BsaXI	ACNNNNNCTCC	2 cut(s)	599, 629
Bsc4I	CCNNNNNNNGG	1 cut(s)	95
Bse3DI	GCAATG	1 cut(s)	282
Bse8I	GATNNNNATC	1 cut(s)	57
BseBI	CCWGG	2 cut(s)	90, 437
BseCI	ATCGAT	1 cut(s)	309
BseDI	CCNNGG	2 cut(s)	88, 436
BseJI	GATNNNNATC	1 cut(s)	57
BseLI	CCNNNNNNNGG	1 cut(s)	95
BseMI	GCAATG	1 cut(s)	282
BseMII	CTCAG	1 cut(s)	140
BseRI	GAGGAG	1 cut(s)	579
BseXI	GCAGC	1 cut(s)	7
BshFI	GGCC	2 cut(s)	87, 523
BshNI	GGYRCC	2 cut(s)	104, 417
BshVI	ATCGAT	1 cut(s)	309
BslI	CCNNNNNNNGG	1 cut(s)	95
BsmAI	GTCTC	2 cut(s)	506, 633
BsnI	GGCC	2 cut(s)	87, 523
Bsp143I	GATC	2 cut(s)	52, 160
BspACI	CCGC	2 cut(s)	475, 612
BspANI	GGCC	2 cut(s)	87, 523
BspCNI	CTCAG	1 cut(s)	141
BspDI	ATCGAT	1 cut(s)	309
BspLI	GGNNCC	4 cut(s)	106, 202, 419, 434
BspT107I	GGYRCC	2 cut(s)	104, 417
BsrDI	GCAATG	1 cut(s)	282
BssECI	CCNNGG	2 cut(s)	88, 436
BssMI	GATC	2 cut(s)	52, 160
BssNI	GRCGYC	1 cut(s)	418
Bst2UI	CCWGG	2 cut(s)	90, 437
Bst4CI	ACNGT	3 cut(s)	10, 67, 338
Bst6I	CTCTTC	3 cut(s)	399, 436, 525
BstACI	GRCGYC	1 cut(s)	418
BstDEI	CTNAG	1 cut(s)	149
BstH2I	RGCGCY	1 cut(s)	421
BstHHI	GCGC	2 cut(s)	116, 420
BstKTI	GATC	2 cut(s)	55, 163
BstMAI	GTCTC	2 cut(s)	506, 633
BstMBI	GATC	2 cut(s)	52, 160
BstMWI	GCNNNNNNNGC	2 cut(s)	350, 560
BstNI	CCWGG	2 cut(s)	90, 437
BstPAI	GACNNNNGTC	1 cut(s)	362
BstSCI	CCNGG	2 cut(s)	88, 435
BstV1I	GCAGC	1 cut(s)	7
Bsu15I	ATCGAT	1 cut(s)	309
BsuRI	GGCC	2 cut(s)	87, 523
BsuTUI	ATCGAT	1 cut(s)	309
BtsI	GCAGTG	1 cut(s)	100
BtsIMutI	CAGTG	1 cut(s)	100
CfoI	GCGC	2 cut(s)	116, 420
Cfr13I	GGNCC	1 cut(s)	86
ClaI	ATCGAT	1 cut(s)	309
Csp6I	GTAC	2 cut(s)	105, 616
CviAII	CATG	4 cut(s)	205, 217, 625, 634
CviJI	RGCY	8 cut(s)	35, 45, 87, 262, 353, 370, 523, 554
CviKI_1	RGCY	8 cut(s)	35, 45, 87, 262, 353, 370, 523, 554
CviQI	GTAC	2 cut(s)	105, 616
DdeI	CTNAG	1 cut(s)	149
DinI	GGCGCC	1 cut(s)	419
DpnI	GATC	2 cut(s)	54, 162
DpnII	GATC	2 cut(s)	52, 160
Eam1104I	CTCTTC	3 cut(s)	399, 436, 525
EarI	CTCTTC	3 cut(s)	399, 436, 525
Eco147I	AGGCCT	1 cut(s)	523
Eco57I	CTGAAG	1 cut(s)	420
EcoRII	CCWGG	2 cut(s)	88, 435
EgeI	GGCGCC	1 cut(s)	419
EheI	GGCGCC	1 cut(s)	419
FaeI	CATG	4 cut(s)	208, 220, 628, 637
FaiI	YATR	6 cut(s)	206, 218, 458, 540, 626, 635
FatI	CATG	4 cut(s)	204, 216, 624, 633
FauI	CCCGC	1 cut(s)	605
Fnu4HI	GCNGC	1 cut(s)	21
Fsp4HI	GCNGC	1 cut(s)	21
FspBI	CTAG	2 cut(s)	491, 498
FspI	TGCGCA	1 cut(s)	115
GlaI	GCGC	2 cut(s)	115, 419
GluI	GCNGC	1 cut(s)	21
GsuI	CTGGAG	2 cut(s)	251, 302
HaeII	RGCGCY	1 cut(s)	421
HaeIII	GGCC	2 cut(s)	87, 523
HhaI	GCGC	2 cut(s)	116, 420
Hin1I	GRCGYC	1 cut(s)	418
Hin1II	CATG	4 cut(s)	208, 220, 628, 637
Hin6I	GCGC	2 cut(s)	114, 418
HinP1I	GCGC	2 cut(s)	114, 418
HincII	GTYRAC	2 cut(s)	16, 673
HindII	GTYRAC	2 cut(s)	16, 673
HindIII	AAGCTT	2 cut(s)	43, 260
HinfI	GANTC	3 cut(s)	58, 494, 542
HpaI	GTTAAC	2 cut(s)	16, 673
HphI	GGTGA	1 cut(s)	170
Hpy166II	GTNNAC	3 cut(s)	16, 141, 673
Hpy188I	TCNGA	4 cut(s)	57, 150, 193, 400
Hpy188III	TCNNGA	2 cut(s)	268, 491
Hpy8I	GTNNAC	3 cut(s)	16, 141, 673
HpyAV	CCTTC	4 cut(s)	221, 381, 513, 571
HpyCH4III	ACNGT	3 cut(s)	10, 67, 338
HpyCH4V	TGCA	1 cut(s)	344
HpyF10VI	GCNNNNNNNGC	2 cut(s)	350, 560
HpyF3I	CTNAG	1 cut(s)	149
Hsp92I	GRCGYC	1 cut(s)	418
Hsp92II	CATG	4 cut(s)	208, 220, 628, 637
HspAI	GCGC	2 cut(s)	114, 418
KasI	GGCGCC	1 cut(s)	417
KpnI	GGTACC	1 cut(s)	108
KspAI	GTTAAC	2 cut(s)	16, 673
Kzo9I	GATC	2 cut(s)	52, 160
Lsp1109I	GCAGC	1 cut(s)	7
LweI	GCATC	1 cut(s)	502
MaeI	CTAG	2 cut(s)	491, 498
MaeIII	GTNAC	2 cut(s)	250, 355
MalI	GATC	2 cut(s)	54, 162
MboI	GATC	2 cut(s)	52, 160
MboII	GAAGA	6 cut(s)	341, 413, 416, 453, 458, 542
MfeI	CAATTG	1 cut(s)	507
MluCI	AATT	4 cut(s)	234, 255, 299, 507
Mly113I	GGCGCC	1 cut(s)	418
MlyI	GAGTC	2 cut(s)	503, 551
MnlI	CCTC	8 cut(s)	25, 330, 343, 408, 526, 597, 600, 643
MseI	TTAA	4 cut(s)	15, 258, 480, 672
MslI	CAYNNNNRTG	1 cut(s)	150
MspR9I	CCNGG	2 cut(s)	90, 437
MunI	CAATTG	1 cut(s)	507
MvaI	CCWGG	2 cut(s)	90, 437
MwoI	GCNNNNNNNGC	2 cut(s)	350, 560
NarI	GGCGCC	1 cut(s)	418
NdeII	GATC	2 cut(s)	52, 160
NlaIII	CATG	4 cut(s)	208, 220, 628, 637
NlaIV	GGNNCC	4 cut(s)	106, 202, 419, 434
NmuCI	GTSAC	1 cut(s)	355
NsbI	TGCGCA	1 cut(s)	115
PceI	AGGCCT	1 cut(s)	523
PfeI	GAWTC	1 cut(s)	58
PflMI	CCANNNNNTGG	1 cut(s)	95
PkrI	GCNGC	1 cut(s)	22
PleI	GAGTC	2 cut(s)	502, 550
PluTI	GGCGCC	1 cut(s)	421
PpsI	GAGTC	2 cut(s)	502, 550
PshAI	GACNNNNGTC	1 cut(s)	362
Psp6I	CCWGG	2 cut(s)	88, 435
PspGI	CCWGG	2 cut(s)	88, 435
PspN4I	GGNNCC	4 cut(s)	106, 202, 419, 434
PspPI	GGNCC	1 cut(s)	86
RsaI	GTAC	2 cut(s)	106, 617
RsaNI	GTAC	2 cut(s)	105, 616
RseI	CAYNNNNRTG	1 cut(s)	150
SaqAI	TTAA	4 cut(s)	15, 258, 480, 672
SatI	GCNGC	1 cut(s)	21
Sau3AI	GATC	2 cut(s)	52, 160
Sau96I	GGNCC	1 cut(s)	86
SchI	GAGTC	2 cut(s)	503, 551
ScrFI	CCNGG	2 cut(s)	90, 437
SetI	ASST	4 cut(s)	47, 264, 486, 537
SfaNI	GCATC	1 cut(s)	502
SfoI	GGCGCC	1 cut(s)	419
SmiMI	CAYNNNNRTG	1 cut(s)	150
Sse9I	AATT	4 cut(s)	234, 255, 299, 507
SseBI	AGGCCT	1 cut(s)	523
SsiI	CCGC	2 cut(s)	475, 612
SspDI	GGCGCC	1 cut(s)	417
SspMI	CTAG	2 cut(s)	491, 498
StuI	AGGCCT	1 cut(s)	523
StyD4I	CCNGG	2 cut(s)	88, 435
TaaI	ACNGT	3 cut(s)	10, 67, 338
TaqI	TCGA	3 cut(s)	40, 309, 366
TasI	AATT	4 cut(s)	234, 255, 299, 507
TfiI	GAWTC	1 cut(s)	58
Tru1I	TTAA	4 cut(s)	15, 258, 480, 672
Tru9I	TTAA	4 cut(s)	15, 258, 480, 672
TscAI	CASTG	1 cut(s)	100
TseFI	GTSAC	1 cut(s)	355
TseI	GCWGC	1 cut(s)	20
Tsp45I	GTSAC	1 cut(s)	355
TspDTI	ATGAA	3 cut(s)	342, 363, 654
TspRI	CASTG	1 cut(s)	100
Van91I	CCANNNNNTGG	1 cut(s)	95
XapI	RAATTY	1 cut(s)	299
XbaI	TCTAGA	1 cut(s)	490
XspI	CTAG	2 cut(s)	491, 498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.