Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0004077

Physical Location & Seq

Genomic Coordinates Forward (+)

4674380 .. 4676123

Gene Structure 1744 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g07810.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGGGAACAGCTGTGAATGCAGTCTCCAGGAAGGAGGCAGCTAGAAGCTTAGCTGATCTGAAACCTACTGTAGTGTTTGTCTTGGGTGGTCCAGGCAGTGGAAAGGGTACCCAATGTGCAAACATTGTTAAGCATTTTGGGTTTACCCATCTCAGTGCTGGTGATCTTCTACGAGCTGAAAGGAATTCTGGTTCTGAAAACGGAACCATGATTTCAAACATGATCAAAGAAGGACAGATTGTTCCTTCTGCAGTGACAATTAAGCTTCTGGAGCGAGCAATGCTGGAGAGCGGTAATGACAAGTTTCTCATTGATGGGTTTCCTCGTAATGAAGAAAACCGTGCTGCATTTGAGGATGTGACTAAAATTGAGCCCTCATTCGTCTTGTATTTTGATTGTTCTGAAGAGGAGATGGAGAAGCGCCTTTTGAGTAGAAACCAGGGAAGAGATGATGATAATGTAGAGACAATAAGGAAGAGGTTTAAGGTTTTTCTAGAGTCTACTCAAAAAGTGTTGGAGCATTATAATGCTCAGGGGAAGGTTCGAAAGATTGATGCTGGGAGGCCTGTTGAAGAGGTTTTCGAGTCAGTGAAAGGCATTTTTGGCCCCAAAGTTGAGAAGGCAGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00240 ko00983 ko01100 map00240 map00983 map01100

Pfam Domains

Protein Families

ADK

Protein Analysis

210

Amino Acids

23.14

Weight (kDa)

6.36

Isoelectric Point (pI)

30.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_33	PF13671	24 - 161	2.7e-07	AAA domain
AAA_18	PF13238	25 - 153	6.4e-08	AAA domain
ADK	PF00406	27 - 179	4.6e-46	Adenylate kinase
AAA_17	PF13207	28 - 158	9.8e-37	AAA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004077)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60180 AT3G60180 AT5G26667 AT5G26667 AT5G26667 AT5G26667
fragaria_vesca	FvH4_6g07810 FvH4_6g07810 FvH4_6g07810
malus_domestica	MD04G1062600.v1.1 MD07G1087100.v1.1
prunus_persica	Prupe.2G114000_v2.0.a1 Prupe.2G114000_v2.0.a1 Prupe.2G114000_v2.0.a1 Prupe.2G114000_v2.0.a1
pyrus_communis	pycom04g05600
rosa_chinensis	RchiOBHm_Chr1g0343601 RchiOBHm_Chr3g0457521
rosa_laevigata	RLG00000028960
rosa_multiflora	Rmu_sc0000335.1_g000002 Rmu_sc0001290.1_g000001 Rmu_sc0007404.1_g000013 Rmu_sc0007404.1_g000014
rosa_roxburghii	Rroxscaffold_4G00310450 Rroxscaffold_6G00421800
rosa_rugosa	Rorug01G0167700 Rorug03G0020700
rosa_samantha	Rh1AG183900 Rh3BG083600 Rh3CG083800 Rh3DG085200
rosa_wichuraiana	Rw1G015230 Rw3G006990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	525
Acc65I	GGTACC	1 cut(s)	107
AccB1I	GGYRCC	1 cut(s)	107
AccB7I	CCANNNNNTGG	1 cut(s)	98
AccBSI	CCGCTC	1 cut(s)	291
AccI	GTMKAC	1 cut(s)	500
AciI	CCGC	1 cut(s)	291
AcsI	RAATTY	1 cut(s)	184
AcuI	CTGAAG	1 cut(s)	423
AfaI	GTAC	1 cut(s)	109
AfiI	CCNNNNNNNGG	1 cut(s)	98
AgsI	TTSAA	2 cut(s)	216, 572
AjnI	CCWGG	3 cut(s)	26, 91, 438
AloI	GAACNNNNNNTCC	4 cut(s)	175, 207, 225, 257
AluBI	AGCT	6 cut(s)	11, 41, 48, 53, 176, 265
AluI	AGCT	6 cut(s)	11, 41, 48, 53, 176, 265
Alw26I	GTCTC	2 cut(s)	28, 458
AoxI	GGCC	2 cut(s)	563, 604
ApeKI	GCWGC	2 cut(s)	38, 344
ApoI	RAATTY	1 cut(s)	184
Asp718I	GGTACC	1 cut(s)	107
AspLEI	GCGC	1 cut(s)	423
AspS9I	GGNCC	2 cut(s)	89, 605
AsuHPI	GGTGA	1 cut(s)	173
AsuII	TTCGAA	1 cut(s)	544
AvaII	GGWCC	1 cut(s)	89
BanI	GGYRCC	1 cut(s)	107
BanII	GRGCYC	1 cut(s)	375
BbvI	GCAGC	2 cut(s)	50, 331
BccI	CCATC	3 cut(s)	156, 308, 406
BciT130I	CCWGG	3 cut(s)	28, 93, 440
BclI	TGATCA	1 cut(s)	222
BcoDI	GTCTC	2 cut(s)	28, 458
BfaI	CTAG	2 cut(s)	42, 494
BfmI	CTRYAG	2 cut(s)	69, 249
BfoI	RGCGCY	1 cut(s)	424
BisI	GCNGC	2 cut(s)	39, 345
BlpI	GCTNAGC	1 cut(s)	49
BlsI	GCNGC	2 cut(s)	40, 346
Bme1390I	CCNGG	3 cut(s)	28, 93, 440
Bme18I	GGWCC	1 cut(s)	89
BmgT120I	GGNCC	2 cut(s)	89, 605
BmiI	GGNNCC	3 cut(s)	109, 205, 607
BmrFI	CCNGG	3 cut(s)	28, 93, 440
BmsI	GCATC	1 cut(s)	544
BpmI	CTGGAG	3 cut(s)	10, 290, 305
Bpu10I	CCTNAGC	1 cut(s)	531
Bpu1102I	GCTNAGC	1 cut(s)	49
Bpu14I	TTCGAA	1 cut(s)	544
BsaJI	CCNNGG	1 cut(s)	439
Bsc4I	CCNNNNNNNGG	1 cut(s)	98
Bse3DI	GCAATG	1 cut(s)	285
BseBI	CCWGG	3 cut(s)	28, 93, 440
BseDI	CCNNGG	1 cut(s)	439
BseGI	GGATG	1 cut(s)	361
BseLI	CCNNNNNNNGG	1 cut(s)	98
BseMI	GCAATG	1 cut(s)	285
BseMII	CTCAG	2 cut(s)	166, 545
BseRI	GAGGAG	1 cut(s)	422
BseXI	GCAGC	2 cut(s)	50, 331
BseYI	CCCAGC	1 cut(s)	557
BshFI	GGCC	2 cut(s)	565, 606
BshNI	GGYRCC	1 cut(s)	107
BslI	CCNNNNNNNGG	1 cut(s)	98
BsmAI	GTCTC	2 cut(s)	28, 458
BsmI	GAATGC	1 cut(s)	22
BsnI	GGCC	2 cut(s)	565, 606
Bsp119I	TTCGAA	1 cut(s)	544
Bsp1286I	GDGCHC	1 cut(s)	375
Bsp143I	GATC	3 cut(s)	55, 163, 222
Bsp1720I	GCTNAGC	1 cut(s)	49
BspACI	CCGC	1 cut(s)	291
BspANI	GGCC	2 cut(s)	565, 606
BspCNI	CTCAG	2 cut(s)	165, 544
BspLI	GGNNCC	3 cut(s)	109, 205, 607
BspMAI	CTGCAG	1 cut(s)	253
BspT104I	TTCGAA	1 cut(s)	544
BspT107I	GGYRCC	1 cut(s)	107
BsrBI	CCGCTC	1 cut(s)	291
BsrDI	GCAATG	1 cut(s)	285
BssECI	CCNNGG	1 cut(s)	439
BssMI	GATC	3 cut(s)	55, 163, 222
Bst2UI	CCWGG	3 cut(s)	28, 93, 440
Bst4CI	ACNGT	2 cut(s)	70, 341
Bst6I	CTCTTC	4 cut(s)	399, 439, 470, 567
BstBI	TTCGAA	1 cut(s)	544
BstC8I	GCNNGC	1 cut(s)	276
BstDEI	CTNAG	3 cut(s)	49, 152, 531
BstF5I	GGATG	1 cut(s)	361
BstH2I	RGCGCY	1 cut(s)	424
BstHHI	GCGC	1 cut(s)	423
BstKTI	GATC	3 cut(s)	58, 166, 225
BstMAI	GTCTC	2 cut(s)	28, 458
BstMBI	GATC	3 cut(s)	55, 163, 222
BstMWI	GCNNNNNNNGC	4 cut(s)	17, 271, 280, 603
BstNI	CCWGG	3 cut(s)	28, 93, 440
BstSCI	CCNGG	3 cut(s)	26, 91, 438
BstSFI	CTRYAG	2 cut(s)	69, 249
BstV1I	GCAGC	2 cut(s)	50, 331
BsuRI	GGCC	2 cut(s)	565, 606
BtsCI	GGATG	1 cut(s)	361
BtsI	GCAGTG	2 cut(s)	103, 258
BtsIMutI	CAGTG	4 cut(s)	103, 160, 258, 594
Cac8I	GCNNGC	1 cut(s)	276
CfoI	GCGC	1 cut(s)	423
Cfr13I	GGNCC	2 cut(s)	89, 605
Csp6I	GTAC	1 cut(s)	108
CviAII	CATG	2 cut(s)	208, 220
CviJI	RGCY	9 cut(s)	11, 41, 48, 53, 176, 265, 373, 565, 606
CviKI_1	RGCY	9 cut(s)	11, 41, 48, 53, 176, 265, 373, 565, 606
CviQI	GTAC	1 cut(s)	108
DdeI	CTNAG	3 cut(s)	49, 152, 531
DpnI	GATC	3 cut(s)	57, 165, 224
DpnII	GATC	3 cut(s)	55, 163, 222
Eam1104I	CTCTTC	4 cut(s)	399, 439, 470, 567
EarI	CTCTTC	4 cut(s)	399, 439, 470, 567
Eco147I	AGGCCT	1 cut(s)	565
Eco24I	GRGCYC	1 cut(s)	375
Eco47I	GGWCC	1 cut(s)	89
Eco57I	CTGAAG	1 cut(s)	423
EcoRI	GAATTC	1 cut(s)	184
EcoRII	CCWGG	3 cut(s)	26, 91, 438
EcoT38I	GRGCYC	1 cut(s)	375
FaeI	CATG	2 cut(s)	211, 223
FaiI	YATR	3 cut(s)	209, 221, 525
FatI	CATG	2 cut(s)	207, 219
FbaI	TGATCA	1 cut(s)	222
FblI	GTMKAC	1 cut(s)	500
Fnu4HI	GCNGC	2 cut(s)	39, 345
FokI	GGATG	1 cut(s)	368
FriOI	GRGCYC	1 cut(s)	375
Fsp4HI	GCNGC	2 cut(s)	39, 345
FspBI	CTAG	2 cut(s)	42, 494
GlaI	GCGC	1 cut(s)	422
GluI	GCNGC	2 cut(s)	39, 345
GsaI	CCCAGC	1 cut(s)	561
GsuI	CTGGAG	3 cut(s)	10, 290, 305
HaeII	RGCGCY	1 cut(s)	424
HaeIII	GGCC	2 cut(s)	565, 606
HhaI	GCGC	1 cut(s)	423
Hin1II	CATG	2 cut(s)	211, 223
Hin6I	GCGC	1 cut(s)	421
HinP1I	GCGC	1 cut(s)	421
HindIII	AAGCTT	2 cut(s)	46, 263
HinfI	GANTC	2 cut(s)	497, 584
HphI	GGTGA	1 cut(s)	173
Hpy166II	GTNNAC	2 cut(s)	144, 501
Hpy188I	TCNGA	3 cut(s)	60, 196, 403
Hpy188III	TCNNGA	2 cut(s)	269, 494
Hpy8I	GTNNAC	2 cut(s)	144, 501
HpyAV	CCTTC	5 cut(s)	25, 224, 255, 532, 613
HpyCH4III	ACNGT	2 cut(s)	70, 341
HpyCH4V	TGCA	4 cut(s)	20, 119, 251, 347
HpyF10VI	GCNNNNNNNGC	4 cut(s)	17, 271, 280, 603
HpyF3I	CTNAG	3 cut(s)	49, 152, 531
Hsp92II	CATG	2 cut(s)	211, 223
HspAI	GCGC	1 cut(s)	421
KpnI	GGTACC	1 cut(s)	111
Ksp22I	TGATCA	1 cut(s)	222
Kzo9I	GATC	3 cut(s)	55, 163, 222
LmnI	GCTCC	2 cut(s)	271, 517
Lsp1109I	GCAGC	2 cut(s)	50, 331
LweI	GCATC	1 cut(s)	544
MaeI	CTAG	2 cut(s)	42, 494
MaeIII	GTNAC	2 cut(s)	253, 358
MalI	GATC	3 cut(s)	57, 165, 224
MbiI	CCGCTC	1 cut(s)	291
MboI	GATC	3 cut(s)	55, 163, 222
MboII	GAAGA	6 cut(s)	158, 344, 416, 456, 487, 584
MhlI	GDGCHC	1 cut(s)	375
MluCI	AATT	3 cut(s)	184, 258, 366
MlyI	GAGTC	2 cut(s)	506, 593
MmeI	TCCRAC	1 cut(s)	495
MnlI	CCTC	8 cut(s)	28, 333, 346, 385, 400, 471, 555, 568
MseI	TTAA	3 cut(s)	129, 261, 483
MslI	CAYNNNNRTG	2 cut(s)	153, 525
MspA1I	CMGCKG	1 cut(s)	11
MspR9I	CCNGG	3 cut(s)	28, 93, 440
Mva1269I	GAATGC	1 cut(s)	22
MvaI	CCWGG	3 cut(s)	28, 93, 440
MwoI	GCNNNNNNNGC	4 cut(s)	17, 271, 280, 603
NdeII	GATC	3 cut(s)	55, 163, 222
NlaIII	CATG	2 cut(s)	211, 223
NlaIV	GGNNCC	3 cut(s)	109, 205, 607
NmuCI	GTSAC	2 cut(s)	253, 358
NspV	TTCGAA	1 cut(s)	544
PceI	AGGCCT	1 cut(s)	565
PctI	GAATGC	1 cut(s)	22
PflMI	CCANNNNNTGG	1 cut(s)	98
PfoI	TCCNGGA	1 cut(s)	26
PkrI	GCNGC	2 cut(s)	40, 346
PleI	GAGTC	2 cut(s)	505, 592
PpsI	GAGTC	2 cut(s)	505, 592
PsiI	TTATAA	1 cut(s)	525
Psp6I	CCWGG	3 cut(s)	26, 91, 438
PspFI	CCCAGC	1 cut(s)	557
PspGI	CCWGG	3 cut(s)	26, 91, 438
PspN4I	GGNNCC	3 cut(s)	109, 205, 607
PspPI	GGNCC	2 cut(s)	89, 605
PstI	CTGCAG	1 cut(s)	253
PvuII	CAGCTG	1 cut(s)	11
RsaI	GTAC	1 cut(s)	109
RsaNI	GTAC	1 cut(s)	108
RseI	CAYNNNNRTG	2 cut(s)	153, 525
SaqAI	TTAA	3 cut(s)	129, 261, 483
SatI	GCNGC	2 cut(s)	39, 345
Sau3AI	GATC	3 cut(s)	55, 163, 222
Sau96I	GGNCC	2 cut(s)	89, 605
SchI	GAGTC	2 cut(s)	506, 593
ScrFI	CCNGG	3 cut(s)	28, 93, 440
SduI	GDGCHC	1 cut(s)	375
SfaNI	GCATC	1 cut(s)	544
SfcI	CTRYAG	2 cut(s)	69, 249
SfuI	TTCGAA	1 cut(s)	544
SinI	GGWCC	1 cut(s)	89
SmiMI	CAYNNNNRTG	2 cut(s)	153, 525
Sse9I	AATT	3 cut(s)	184, 258, 366
SseBI	AGGCCT	1 cut(s)	565
SsiI	CCGC	1 cut(s)	291
SspMI	CTAG	2 cut(s)	42, 494
StuI	AGGCCT	1 cut(s)	565
StyD4I	CCNGG	3 cut(s)	26, 91, 438
TaaI	ACNGT	2 cut(s)	70, 341
TaqI	TCGA	2 cut(s)	544, 582
TasI	AATT	3 cut(s)	184, 258, 366
Tru1I	TTAA	3 cut(s)	129, 261, 483
Tru9I	TTAA	3 cut(s)	129, 261, 483
TscAI	CASTG	4 cut(s)	103, 160, 258, 594
TseFI	GTSAC	2 cut(s)	253, 358
TseI	GCWGC	2 cut(s)	38, 344
Tsp45I	GTSAC	2 cut(s)	253, 358
TspDTI	ATGAA	1 cut(s)	345
TspGWI	ACGGA	1 cut(s)	216
TspRI	CASTG	4 cut(s)	103, 160, 258, 594
Van91I	CCANNNNNTGG	1 cut(s)	98
VpaK11BI	GGWCC	1 cut(s)	89
XapI	RAATTY	1 cut(s)	184
XbaI	TCTAGA	1 cut(s)	493
XcmI	CCANNNNNNNNNTGG	1 cut(s)	155
XmiI	GTMKAC	1 cut(s)	500
XspI	CTAG	2 cut(s)	42, 494

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.