Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0004077

Physical Location & Seq

Genomic Coordinates Reverse (-)

35016108 .. 35020349

Gene Structure 4242 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG183900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGGGAACAGTTGTTAACGCTGCCAACAAGGAGGCTAATCGAAGCTTAGCCGATCTGAATCCTACTGTTGTTTTCGTCTTGGGTGGCCCAGGCAGTGGAAAGGGTACCCAATGCGCAAACATTGTTCAGCACTTTGGGTTTACACATCTGAGTGCTGGTGATCTACTACGAGCAGAAATCAAGTCTGGTTCTGAAAATGGAACCATGATTTCGAACATGATAAAAGAAGGAAAAATTGTTCCTTCGGAAGTAACAATTAAGCTTCTCCAGAAAGCAATGCTGGAGAGTGGTAATGACAAATTTCTTATCGATGGGTTTCCTCGTAATGAAGAAAACCGTTCTGCATTTGAGGCTGTGACTAAAGTCGAGCCTTCATTTGTCCTGTTTTTTGATTGTTCTGAAGAAGAGATGGAGAGACGCCTTTTGAGTAGGAACCAGGGAAGAGAAGATGATAACATAGAAACAATAAGGAAGCGGTTTAAGGTTTTTCTAGAGTCTAGTCTCCCAGTGATAGAATACTATAACTCCAAGGGGAAAGTTCGGAAGATTGATGCTGGAAGGACTGTTGAAGAGGTTTATGAGTCAGTAAAAGCCATTTTTGCCCCGAAAGATGAGAAGATTGATGCTGGAAGACCTGTTGAAGAGGTTTTTGAGTCAGTAAAAGCCAATTTTGCCCCGGAAAATGAGAAGGCTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00240 ko00983 ko01100 map00240 map00983 map01100

Pfam Domains

Protein Families

ADK

Protein Analysis

232

Amino Acids

25.74

Weight (kDa)

5.27

Isoelectric Point (pI)

42.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_33	PF13671	23 - 158	4e-06	AAA domain
AAA_18	PF13238	24 - 150	1.2e-08	AAA domain
ADK	PF00406	26 - 178	2.7e-48	Adenylate kinase
AAA_17	PF13207	27 - 157	2.6e-37	AAA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004077)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60180 AT3G60180 AT5G26667 AT5G26667 AT5G26667 AT5G26667
fragaria_vesca	FvH4_6g07810 FvH4_6g07810 FvH4_6g07810
malus_domestica	MD04G1062600.v1.1 MD07G1087100.v1.1
prunus_persica	Prupe.2G114000_v2.0.a1 Prupe.2G114000_v2.0.a1 Prupe.2G114000_v2.0.a1 Prupe.2G114000_v2.0.a1
pyrus_communis	pycom04g05600
rosa_chinensis	RchiOBHm_Chr1g0343601 RchiOBHm_Chr3g0457521
rosa_laevigata	RLG00000028960
rosa_multiflora	Rmu_sc0000335.1_g000002 Rmu_sc0001290.1_g000001 Rmu_sc0007404.1_g000013 Rmu_sc0007404.1_g000014
rosa_roxburghii	Rroxscaffold_4G00310450 Rroxscaffold_6G00421800
rosa_rugosa	Rorug01G0167700 Rorug03G0020700
rosa_samantha	Rh1AG183900 Rh3BG083600 Rh3CG083800 Rh3DG085200
rosa_wichuraiana	Rw1G015230 Rw3G006990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	115
Acc65I	GGTACC	1 cut(s)	104
AccB1I	GGYRCC	1 cut(s)	104
AccB7I	CCANNNNNTGG	1 cut(s)	95
AciI	CCGC	1 cut(s)	475
AcsI	RAATTY	1 cut(s)	299
AcuI	CTGAAG	1 cut(s)	420
AcyI	GRCGYC	1 cut(s)	418
AfaI	GTAC	1 cut(s)	106
AfiI	CCNNNNNNNGG	1 cut(s)	95
AgsI	TTSAA	2 cut(s)	569, 641
AjnI	CCWGG	2 cut(s)	88, 435
AloI	GAACNNNNNNTCC	2 cut(s)	222, 254
AluBI	AGCT	2 cut(s)	45, 262
AluI	AGCT	2 cut(s)	45, 262
Alw26I	GTCTC	2 cut(s)	409, 506
AoxI	GGCC	1 cut(s)	85
ApeKI	GCWGC	1 cut(s)	20
ApoI	RAATTY	1 cut(s)	299
Asp718I	GGTACC	1 cut(s)	104
AspLEI	GCGC	1 cut(s)	116
AspS9I	GGNCC	1 cut(s)	86
AsuC2I	CCSGG	1 cut(s)	677
AsuHPI	GGTGA	1 cut(s)	170
AsuII	TTCGAA	1 cut(s)	212
BanI	GGYRCC	1 cut(s)	104
BbsI	GAAGAC	1 cut(s)	637
BbvI	GCAGC	1 cut(s)	7
BccI	CCATC	2 cut(s)	305, 403
BciT130I	CCWGG	2 cut(s)	90, 437
BcnI	CCSGG	1 cut(s)	677
BcoDI	GTCTC	2 cut(s)	409, 506
BfaI	CTAG	2 cut(s)	491, 498
BisI	GCNGC	1 cut(s)	21
BlpI	GCTNAGC	1 cut(s)	46
BlsI	GCNGC	1 cut(s)	22
Bme1390I	CCNGG	3 cut(s)	90, 437, 677
BmgT120I	GGNCC	1 cut(s)	86
BmiI	GGNNCC	3 cut(s)	106, 202, 434
BmrFI	CCNGG	3 cut(s)	90, 437, 677
BmrI	ACTGGG	1 cut(s)	500
BmsI	GCATC	2 cut(s)	541, 613
BmuI	ACTGGG	1 cut(s)	500
BoxI	GACNNNNGTC	1 cut(s)	362
BpiI	GAAGAC	1 cut(s)	637
BpmI	CTGGAG	2 cut(s)	251, 302
Bpu1102I	GCTNAGC	1 cut(s)	46
Bpu14I	TTCGAA	1 cut(s)	212
BpuMI	CCSGG	1 cut(s)	677
Bsa29I	ATCGAT	1 cut(s)	309
BsaBI	GATNNNNATC	1 cut(s)	57
BsaHI	GRCGYC	1 cut(s)	418
BsaJI	CCNNGG	4 cut(s)	88, 436, 528, 675
BsaXI	ACNNNNNCTCC	2 cut(s)	509, 539
Bsc4I	CCNNNNNNNGG	1 cut(s)	95
Bse1I	ACTGG	1 cut(s)	506
Bse3DI	GCAATG	1 cut(s)	282
Bse8I	GATNNNNATC	1 cut(s)	57
BseBI	CCWGG	2 cut(s)	90, 437
BseCI	ATCGAT	1 cut(s)	309
BseDI	CCNNGG	4 cut(s)	88, 436, 528, 675
BseJI	GATNNNNATC	1 cut(s)	57
BseLI	CCNNNNNNNGG	1 cut(s)	95
BseMI	GCAATG	1 cut(s)	282
BseMII	CTCAG	1 cut(s)	140
BseNI	ACTGG	1 cut(s)	506
BseXI	GCAGC	1 cut(s)	7
BshFI	GGCC	1 cut(s)	87
BshNI	GGYRCC	1 cut(s)	104
BshVI	ATCGAT	1 cut(s)	309
BsiSI	CCGG	1 cut(s)	677
BslI	CCNNNNNNNGG	1 cut(s)	95
BsmAI	GTCTC	2 cut(s)	409, 506
BsmBI	CGTCTC	1 cut(s)	409
BsnI	GGCC	1 cut(s)	87
Bsp119I	TTCGAA	1 cut(s)	212
Bsp143I	GATC	2 cut(s)	52, 160
Bsp1720I	GCTNAGC	1 cut(s)	46
BspACI	CCGC	1 cut(s)	475
BspANI	GGCC	1 cut(s)	87
BspCNI	CTCAG	1 cut(s)	141
BspDI	ATCGAT	1 cut(s)	309
BspLI	GGNNCC	3 cut(s)	106, 202, 434
BspT104I	TTCGAA	1 cut(s)	212
BspT107I	GGYRCC	1 cut(s)	104
BsrDI	GCAATG	1 cut(s)	282
BsrI	ACTGG	1 cut(s)	506
BssECI	CCNNGG	4 cut(s)	88, 436, 528, 675
BssMI	GATC	2 cut(s)	52, 160
BssNI	GRCGYC	1 cut(s)	418
BssT1I	CCWWGG	1 cut(s)	528
Bst2UI	CCWGG	2 cut(s)	90, 437
Bst4CI	ACNGT	4 cut(s)	10, 67, 338, 565
Bst6I	CTCTTC	4 cut(s)	399, 436, 564, 636
BstACI	GRCGYC	1 cut(s)	418
BstBI	TTCGAA	1 cut(s)	212
BstDEI	CTNAG	2 cut(s)	46, 149
BstHHI	GCGC	1 cut(s)	116
BstKTI	GATC	2 cut(s)	55, 163
BstMAI	GTCTC	2 cut(s)	409, 506
BstMBI	GATC	2 cut(s)	52, 160
BstMWI	GCNNNNNNNGC	3 cut(s)	350, 599, 671
BstNI	CCWGG	2 cut(s)	90, 437
BstPAI	GACNNNNGTC	1 cut(s)	362
BstSCI	CCNGG	3 cut(s)	88, 435, 675
BstV1I	GCAGC	1 cut(s)	7
BstV2I	GAAGAC	1 cut(s)	637
Bsu15I	ATCGAT	1 cut(s)	309
BsuRI	GGCC	1 cut(s)	87
BsuTUI	ATCGAT	1 cut(s)	309
BtsI	GCAGTG	1 cut(s)	100
BtsIMutI	CAGTG	2 cut(s)	100, 513
CfoI	GCGC	1 cut(s)	116
Cfr13I	GGNCC	1 cut(s)	86
ClaI	ATCGAT	1 cut(s)	309
CseI	GACGC	1 cut(s)	426
Csp6I	GTAC	1 cut(s)	105
CviAII	CATG	2 cut(s)	205, 217
CviQI	GTAC	1 cut(s)	105
DdeI	CTNAG	2 cut(s)	46, 149
DpnI	GATC	2 cut(s)	54, 162
DpnII	GATC	2 cut(s)	52, 160
Eam1104I	CTCTTC	4 cut(s)	399, 436, 564, 636
EarI	CTCTTC	4 cut(s)	399, 436, 564, 636
Eco130I	CCWWGG	1 cut(s)	528
Eco57I	CTGAAG	1 cut(s)	420
EcoRII	CCWGG	2 cut(s)	88, 435
EcoT14I	CCWWGG	1 cut(s)	528
ErhI	CCWWGG	1 cut(s)	528
Esp3I	CGTCTC	1 cut(s)	409
FaeI	CATG	2 cut(s)	208, 220
FaiI	YATR	5 cut(s)	206, 218, 458, 522, 579
FatI	CATG	2 cut(s)	204, 216
Fnu4HI	GCNGC	1 cut(s)	21
Fsp4HI	GCNGC	1 cut(s)	21
FspBI	CTAG	2 cut(s)	491, 498
FspI	TGCGCA	1 cut(s)	115
GlaI	GCGC	1 cut(s)	115
GluI	GCNGC	1 cut(s)	21
GsuI	CTGGAG	2 cut(s)	251, 302
HaeIII	GGCC	1 cut(s)	87
HapII	CCGG	1 cut(s)	677
HgaI	GACGC	1 cut(s)	426
HhaI	GCGC	1 cut(s)	116
Hin1I	GRCGYC	1 cut(s)	418
Hin1II	CATG	2 cut(s)	208, 220
Hin6I	GCGC	1 cut(s)	114
HinP1I	GCGC	1 cut(s)	114
HincII	GTYRAC	1 cut(s)	16
HindII	GTYRAC	1 cut(s)	16
HindIII	AAGCTT	2 cut(s)	43, 260
HinfI	GANTC	4 cut(s)	58, 494, 581, 653
HpaI	GTTAAC	1 cut(s)	16
HpaII	CCGG	1 cut(s)	677
HphI	GGTGA	1 cut(s)	170
Hpy166II	GTNNAC	2 cut(s)	16, 141
Hpy188I	TCNGA	6 cut(s)	57, 150, 193, 247, 400, 543
Hpy188III	TCNNGA	2 cut(s)	268, 491
Hpy8I	GTNNAC	2 cut(s)	16, 141
HpyAV	CCTTC	5 cut(s)	221, 252, 381, 552, 682
HpyCH4III	ACNGT	4 cut(s)	10, 67, 338, 565
HpyCH4V	TGCA	1 cut(s)	344
HpyF10VI	GCNNNNNNNGC	3 cut(s)	350, 599, 671
HpyF3I	CTNAG	2 cut(s)	46, 149
Hsp92I	GRCGYC	1 cut(s)	418
Hsp92II	CATG	2 cut(s)	208, 220
HspAI	GCGC	1 cut(s)	114
KpnI	GGTACC	1 cut(s)	108
KspAI	GTTAAC	1 cut(s)	16
Kzo9I	GATC	2 cut(s)	52, 160
Lsp1109I	GCAGC	1 cut(s)	7
LweI	GCATC	2 cut(s)	541, 613
MaeI	CTAG	2 cut(s)	491, 498
MaeIII	GTNAC	2 cut(s)	250, 355
MalI	GATC	2 cut(s)	54, 162
MboI	GATC	2 cut(s)	52, 160
MluCI	AATT	4 cut(s)	234, 255, 299, 667
MlyI	GAGTC	3 cut(s)	503, 590, 662
MnlI	CCTC	5 cut(s)	25, 330, 343, 565, 637
MseI	TTAA	4 cut(s)	15, 258, 480, 697
MslI	CAYNNNNRTG	1 cut(s)	150
MspI	CCGG	1 cut(s)	677
MspR9I	CCNGG	3 cut(s)	90, 437, 677
MvaI	CCWGG	2 cut(s)	90, 437
MwoI	GCNNNNNNNGC	3 cut(s)	350, 599, 671
NciI	CCSGG	1 cut(s)	677
NdeII	GATC	2 cut(s)	52, 160
NlaIII	CATG	2 cut(s)	208, 220
NlaIV	GGNNCC	3 cut(s)	106, 202, 434
NmuCI	GTSAC	1 cut(s)	355
NsbI	TGCGCA	1 cut(s)	115
NspV	TTCGAA	1 cut(s)	212
PfeI	GAWTC	1 cut(s)	58
PflMI	CCANNNNNTGG	1 cut(s)	95
PkrI	GCNGC	1 cut(s)	22
PleI	GAGTC	3 cut(s)	502, 589, 661
PpsI	GAGTC	3 cut(s)	502, 589, 661
PshAI	GACNNNNGTC	1 cut(s)	362
Psp6I	CCWGG	2 cut(s)	88, 435
PspGI	CCWGG	2 cut(s)	88, 435
PspN4I	GGNNCC	3 cut(s)	106, 202, 434
PspPI	GGNCC	1 cut(s)	86
RsaI	GTAC	1 cut(s)	106
RsaNI	GTAC	1 cut(s)	105
RseI	CAYNNNNRTG	1 cut(s)	150
SaqAI	TTAA	4 cut(s)	15, 258, 480, 697
SatI	GCNGC	1 cut(s)	21
Sau3AI	GATC	2 cut(s)	52, 160
Sau96I	GGNCC	1 cut(s)	86
SchI	GAGTC	3 cut(s)	503, 590, 662
ScrFI	CCNGG	3 cut(s)	90, 437, 677
SetI	ASST	6 cut(s)	47, 264, 486, 576, 637, 648
SfaNI	GCATC	2 cut(s)	541, 613
SfuI	TTCGAA	1 cut(s)	212
SmiMI	CAYNNNNRTG	1 cut(s)	150
Sse9I	AATT	4 cut(s)	234, 255, 299, 667
SsiI	CCGC	1 cut(s)	475
SspMI	CTAG	2 cut(s)	491, 498
StyD4I	CCNGG	3 cut(s)	88, 435, 675
StyI	CCWWGG	1 cut(s)	528
TaaI	ACNGT	4 cut(s)	10, 67, 338, 565
TaqI	TCGA	4 cut(s)	40, 212, 309, 366
TasI	AATT	4 cut(s)	234, 255, 299, 667
TfiI	GAWTC	1 cut(s)	58
Tru1I	TTAA	4 cut(s)	15, 258, 480, 697
Tru9I	TTAA	4 cut(s)	15, 258, 480, 697
TscAI	CASTG	2 cut(s)	100, 513
TseFI	GTSAC	1 cut(s)	355
TseI	GCWGC	1 cut(s)	20
Tsp45I	GTSAC	1 cut(s)	355
TspDTI	ATGAA	2 cut(s)	342, 363
TspRI	CASTG	2 cut(s)	100, 513
Van91I	CCANNNNNTGG	1 cut(s)	95
XapI	RAATTY	1 cut(s)	299
XbaI	TCTAGA	1 cut(s)	490
XspI	CTAG	2 cut(s)	491, 498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.