Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0004077

Physical Location & Seq

Genomic Coordinates Reverse (-)

1657176 .. 1680105

Gene Structure 22930 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0020700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1551 bp

ATGAAGAACAGAGGATGCCGAACCTCTCAATTCCTCCCTAACAAGAAGCATGAGAAAAGAAGCAAGACGAAGAAAAAAGAAAACTTGGGAAAGAAACAGAAAAATAAGGGTGAGTTGAGCTCTGTGGATCGAAATGGTGGGGTCAGCTATGTGGATAGAATCAGTGAGTTGCCGGATGGCATTCTTGTTAGTATCTTGTCTTGCTTGCTTCTCAAGGAAGCAGCAGCTACTAGTGTCCTATCAAGGCGGTGGCGGGATCTGTGGGCGTCTACTATGAATCTCAACTTTGAAGATGAGAAGAATTCGAGTGATTTCATGGAAGTGAAGCCGAATATACAACACAGGAAACGCCGCAGTTTTGTTAGTTTGGTGGATCGTGTGTTGCAACAGCATACAGGCCCATTGATTGAACAGTTCAGGGCTTGCTTTTTTCTGGATTGTCGCTTTGCACGATCCATTGATGGATGGATTGAGTTTGCAATGAAAAAGAGGGTTCAAATACTTGAGCTGGAGTTTTCAGCAGCTAATGTTAAGGATAACTATATATTTCCCCATGAACTACTAGGTCTTGAAACAGGGTCTACTCGAAAGGACTTACATTCTAGCATCCCAAGTCGACACTTTTCTGAATGCAGTATGGGTTTCAAGTCACTAAAAATTCTTAATTTGCGACATGTTAATGTGGATGGAGAAGTTCTTGAGTACTTATTAATGAACTGTCCAGTCGAAAGAATATCAGTGGTGGCAGCCAAAAATCTGGTTGATTTAAGAGTTGTTAGTCCATCCATTGGATGGAAGTATTTGGCAATAGAAAATTGTCCTGACCTCAAAACCATTGAGATATGTAATGCAGACATTGTTTCATTTACTTACATTGGAGTTGCTATAAACCTGCTTCTGAGTAATGTACCTTTGCTTGCTGAGGTATCCATTACTGAGCTCGAGATTGAGAGCAACAACTTTTTCGATTCTATAACTATATCCGTAGAGCTTCCCTTCACCCAACTCTCATGCTATCTTTCTCAGCTGAAGTATCTCACGATGGATATCAGTGAAGCGGTCTACAATCAGGATTATGTGTTTCCTATATTAGCAAATCTCAAGTATTTGGAATTAATATGTGAACCACATTATGCGTCCTCTCTTCGTTATTTGACTTCTTTCATGAAGGCATCTCCTTACTTGCAGAGACTTGTGTTGAAGATGAATATCATCACATCCTGGTTGGAGGAGATGGGAATAGGAAAAACAGACATGGAGGAGATTGTGACAACAGAGCAAATGGAGACTCTTGCCAAATGCCCTCATCATGAGCTCAGAGTAATAGAAATAGTTGGGTATCGTGCTCGTAGATTTGCTGCTAAACATGTCATGCTTTTATTAAAGAATGTTGTTGCACTGGAGAAACTTATTATTGATCCTGTCCGGCATCGGTCTCGTGGGCCGAGTATGGTGAAGGAAGATATTGATGAGGAAATGAAGGCGAGAAATCATGCTATGAAACACCTTAAGAAAATTGTTCCTTCAACTGTAAACTTTGTATGCCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00240 ko00983 ko01100 map00240 map00983 map01100

Pfam Domains

Protein Families

ADK

Protein Analysis

516

Amino Acids

59.17

Weight (kDa)

8.74

Isoelectric Point (pI)

50.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	54 - 90	1e-05	F-box domain
LRR_At1g61320_AtMIF1	PF23622	127 - 513	3.8e-31	At1g61320/AtMIF1, LRR domain
LRR_At5g56370	PF24758	153 - 264	5.7e-08	FBD-associated F-box protein At5g56370, LRR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004077)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60180 AT3G60180 AT5G26667 AT5G26667 AT5G26667 AT5G26667
fragaria_vesca	FvH4_6g07810 FvH4_6g07810 FvH4_6g07810
malus_domestica	MD04G1062600.v1.1 MD07G1087100.v1.1
prunus_persica	Prupe.2G114000_v2.0.a1 Prupe.2G114000_v2.0.a1 Prupe.2G114000_v2.0.a1 Prupe.2G114000_v2.0.a1
pyrus_communis	pycom04g05600
rosa_chinensis	RchiOBHm_Chr1g0343601 RchiOBHm_Chr3g0457521
rosa_laevigata	RLG00000028960
rosa_multiflora	Rmu_sc0000335.1_g000002 Rmu_sc0001290.1_g000001 Rmu_sc0007404.1_g000013 Rmu_sc0007404.1_g000014
rosa_roxburghii	Rroxscaffold_4G00310450 Rroxscaffold_6G00421800
rosa_rugosa	Rorug01G0167700 Rorug03G0020700
rosa_samantha	Rh1AG183900 Rh3BG083600 Rh3CG083800 Rh3DG085200
rosa_wichuraiana	Rw1G015230 Rw3G006990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	900
AccB7I	CCANNNNNTGG	2 cut(s)	788, 792
AccI	GTMKAC	4 cut(s)	269, 581, 616, 1062
AciI	CCGC	4 cut(s)	247, 253, 352, 1058
AclWI	GGATC	5 cut(s)	135, 264, 381, 447, 1412
AcsI	RAATTY	2 cut(s)	301, 657
AcuI	CTGAAG	1 cut(s)	1049
AcyI	GRCGYC	1 cut(s)	266
AfaI	GTAC	2 cut(s)	704, 909
AfiI	CCNNNNNNNGG	2 cut(s)	788, 792
AflII	CTTAAG	1 cut(s)	1508
AflIII	ACRYGT	2 cut(s)	673, 1366
AgsI	TTSAA	7 cut(s)	290, 410, 497, 572, 646, 1201, 1527
AhlI	ACTAGT	1 cut(s)	230
AjnI	CCWGG	1 cut(s)	1220
AluBI	AGCT	9 cut(s)	120, 147, 227, 508, 524, 940, 991, 1027, 1315
AluI	AGCT	9 cut(s)	120, 147, 227, 508, 524, 940, 991, 1027, 1315
Alw21I	GWGCWC	4 cut(s)	122, 942, 1317, 1348
Alw26I	GTCTC	3 cut(s)	1183, 1280, 1440
AlwI	GGATC	5 cut(s)	135, 264, 381, 447, 1412
Ama87I	CYCGRG	1 cut(s)	941
AoxI	GGCC	2 cut(s)	397, 1442
ApeKI	GCWGC	5 cut(s)	221, 224, 521, 746, 1358
ApoI	RAATTY	2 cut(s)	301, 657
AseI	ATTAAT	2 cut(s)	710, 1115
AspS9I	GGNCC	2 cut(s)	398, 1442
AsuHPI	GGTGA	3 cut(s)	122, 991, 1465
AvaI	CYCGRG	1 cut(s)	941
BanII	GRGCYC	3 cut(s)	122, 942, 1317
BauI	CACGAG	1 cut(s)	1437
Bbv12I	GWGCWC	4 cut(s)	122, 942, 1317, 1348
BbvCI	CCTCAGC	1 cut(s)	921
BbvI	GCAGC	5 cut(s)	233, 236, 533, 758, 1345
BccI	CCATC	8 cut(s)	170, 455, 459, 680, 786, 790, 1036, 1228
BcgI	CGANNNNNNTGC	2 cut(s)	1418, 1452
BciT130I	CCWGG	1 cut(s)	1222
BciVI	GTATCC	1 cut(s)	937
BcoDI	GTCTC	3 cut(s)	1183, 1280, 1440
BcuI	ACTAGT	1 cut(s)	230
BfaI	CTAG	3 cut(s)	231, 563, 603
BfmI	CTRYAG	1 cut(s)	1547
BfrI	CTTAAG	1 cut(s)	1508
BfuAI	ACCTGC	1 cut(s)	900
BfuI	GTATCC	1 cut(s)	937
BisI	GCNGC	6 cut(s)	222, 225, 352, 522, 747, 1359
BlsI	GCNGC	6 cut(s)	223, 226, 353, 523, 748, 1360
BmcAI	AGTACT	1 cut(s)	704
Bme1390I	CCNGG	1 cut(s)	1222
BmeT110I	CYCGRG	1 cut(s)	941
BmgT120I	GGNCC	2 cut(s)	398, 1442
BmrFI	CCNGG	1 cut(s)	1222
BmsI	GCATC	4 cut(s)	5, 615, 1181, 1438
BplI	GAGNNNNNCTC	2 cut(s)	104, 136
BpmI	CTGGAG	2 cut(s)	530, 1421
Bpu10I	CCTNAGC	1 cut(s)	921
BpuEI	CTTGAG	4 cut(s)	197, 524, 719, 1085
BsaBI	GATNNNNATC	2 cut(s)	1046, 1208
BsaHI	GRCGYC	1 cut(s)	266
BsaI	GGTCTC	1 cut(s)	1440
Bsc4I	CCNNNNNNNGG	2 cut(s)	788, 792
Bse1I	ACTGG	2 cut(s)	722, 1404
Bse3DI	GCAATG	1 cut(s)	486
Bse8I	GATNNNNATC	2 cut(s)	1046, 1208
BseBI	CCWGG	1 cut(s)	1222
BseGI	GGATG	8 cut(s)	20, 181, 470, 606, 691, 782, 797, 1217
BseJI	GATNNNNATC	2 cut(s)	1046, 1208
BseLI	CCNNNNNNNGG	2 cut(s)	788, 792
BseMI	GCAATG	1 cut(s)	486
BseMII	CTCAG	5 cut(s)	890, 912, 927, 1037, 1330
BseNI	ACTGG	2 cut(s)	722, 1404
BseRI	GAGGAG	2 cut(s)	1244, 1274
BseXI	GCAGC	5 cut(s)	233, 236, 533, 758, 1345
BshFI	GGCC	2 cut(s)	399, 1444
BsiHKAI	GWGCWC	4 cut(s)	122, 942, 1317, 1348
BsiHKCI	CYCGRG	1 cut(s)	941
BsiSI	CCGG	2 cut(s)	173, 1426
BslI	CCNNNNNNNGG	2 cut(s)	788, 792
BsmAI	GTCTC	3 cut(s)	1183, 1280, 1440
BsmI	GAATGC	2 cut(s)	180, 635
BsnI	GGCC	2 cut(s)	399, 1444
Bso31I	GGTCTC	1 cut(s)	1440
BsoBI	CYCGRG	1 cut(s)	941
Bsp1286I	GDGCHC	4 cut(s)	122, 942, 1317, 1348
Bsp143I	GATC	5 cut(s)	127, 256, 373, 452, 1417
BspACI	CCGC	4 cut(s)	247, 253, 352, 1058
BspANI	GGCC	2 cut(s)	399, 1444
BspCNI	CTCAG	5 cut(s)	891, 913, 928, 1036, 1329
BspHI	TCATGA	2 cut(s)	1164, 1309
BspMI	ACCTGC	1 cut(s)	900
BspPI	GGATC	5 cut(s)	135, 264, 381, 447, 1412
BspTI	CTTAAG	1 cut(s)	1508
BspTNI	GGTCTC	1 cut(s)	1440
BsrDI	GCAATG	1 cut(s)	486
BsrI	ACTGG	2 cut(s)	722, 1404
BssMI	GATC	5 cut(s)	127, 256, 373, 452, 1417
BssNI	GRCGYC	1 cut(s)	266
BssSI	CACGAG	1 cut(s)	1437
Bst2BI	CACGAG	1 cut(s)	1437
Bst2UI	CCWGG	1 cut(s)	1222
Bst4CI	ACNGT	3 cut(s)	414, 719, 1531
Bst6I	CTCTTC	1 cut(s)	1149
BstACI	GRCGYC	1 cut(s)	266
BstAFI	CTTAAG	1 cut(s)	1508
BstC8I	GCNNGC	3 cut(s)	206, 424, 918
BstDEI	CTNAG	5 cut(s)	899, 921, 936, 1023, 1316
BstF5I	GGATG	8 cut(s)	20, 181, 470, 606, 691, 782, 797, 1217
BstKTI	GATC	5 cut(s)	130, 259, 376, 455, 1420
BstMAI	GTCTC	3 cut(s)	1183, 1280, 1440
BstMBI	GATC	5 cut(s)	127, 256, 373, 452, 1417
BstNI	CCWGG	1 cut(s)	1222
BstNSI	RCATGY	2 cut(s)	677, 1370
BstSCI	CCNGG	1 cut(s)	1220
BstSFI	CTRYAG	1 cut(s)	1547
BstV1I	GCAGC	5 cut(s)	233, 236, 533, 758, 1345
BstX2I	RGATCY	1 cut(s)	256
BstXI	CCANNNNNNTGG	1 cut(s)	757
BstYI	RGATCY	1 cut(s)	256
BsuI	GTATCC	1 cut(s)	937
BsuRI	GGCC	2 cut(s)	399, 1444
BtsCI	GGATG	8 cut(s)	20, 181, 470, 606, 691, 782, 797, 1217
BtsIMutI	CAGTG	4 cut(s)	169, 744, 1057, 1397
BveI	ACCTGC	1 cut(s)	900
Cac8I	GCNNGC	3 cut(s)	206, 424, 918
CciI	TCATGA	2 cut(s)	1164, 1309
Cfr13I	GGNCC	2 cut(s)	398, 1442
CseI	GACGC	2 cut(s)	255, 1125
Csp6I	GTAC	2 cut(s)	703, 908
CviQI	GTAC	2 cut(s)	703, 908
DdeI	CTNAG	5 cut(s)	899, 921, 936, 1023, 1316
DpnI	GATC	5 cut(s)	129, 258, 375, 454, 1419
DpnII	GATC	5 cut(s)	127, 256, 373, 452, 1417
Eam1104I	CTCTTC	1 cut(s)	1149
EarI	CTCTTC	1 cut(s)	1149
Ecl136II	GAGCTC	3 cut(s)	120, 940, 1315
Eco24I	GRGCYC	3 cut(s)	122, 942, 1317
Eco31I	GGTCTC	1 cut(s)	1440
Eco32I	GATATC	1 cut(s)	1048
Eco53kI	GAGCTC	3 cut(s)	120, 940, 1315
Eco57I	CTGAAG	1 cut(s)	1049
Eco88I	CYCGRG	1 cut(s)	941
EcoICRI	GAGCTC	3 cut(s)	120, 940, 1315
EcoRI	GAATTC	1 cut(s)	301
EcoRII	CCWGG	1 cut(s)	1220
EcoRV	GATATC	1 cut(s)	1048
EcoT38I	GRGCYC	3 cut(s)	122, 942, 1317
FauI	CCCGC	1 cut(s)	246
FblI	GTMKAC	4 cut(s)	269, 581, 616, 1062
Fnu4HI	GCNGC	6 cut(s)	222, 225, 352, 522, 747, 1359
FokI	GGATG	8 cut(s)	27, 188, 477, 593, 698, 769, 804, 1204
FriOI	GRGCYC	3 cut(s)	122, 942, 1317
Fsp4HI	GCNGC	6 cut(s)	222, 225, 352, 522, 747, 1359
FspBI	CTAG	3 cut(s)	231, 563, 603
GluI	GCNGC	6 cut(s)	222, 225, 352, 522, 747, 1359
GsuI	CTGGAG	2 cut(s)	530, 1421
HaeIII	GGCC	2 cut(s)	399, 1444
HapII	CCGG	2 cut(s)	173, 1426
HgaI	GACGC	2 cut(s)	255, 1125
Hin1I	GRCGYC	1 cut(s)	266
HincII	GTYRAC	1 cut(s)	617
HindII	GTYRAC	1 cut(s)	617
HinfI	GANTC	4 cut(s)	159, 277, 968, 1288
HpaII	CCGG	2 cut(s)	173, 1426
HphI	GGTGA	3 cut(s)	122, 991, 1465
Hpy166II	GTNNAC	6 cut(s)	270, 582, 617, 1063, 1124, 1534
Hpy188I	TCNGA	3 cut(s)	628, 900, 1319
Hpy188III	TCNNGA	9 cut(s)	434, 569, 698, 821, 943, 1039, 1070, 1165, 1310
Hpy8I	GTNNAC	6 cut(s)	270, 582, 617, 1063, 1124, 1534
HpyAV	CCTTC	5 cut(s)	1006, 1162, 1450, 1474, 1533
HpyCH4III	ACNGT	3 cut(s)	414, 719, 1531
HpyCH4V	TGCA	7 cut(s)	385, 449, 479, 633, 851, 1186, 1397
HpyF3I	CTNAG	5 cut(s)	899, 921, 936, 1023, 1316
Hsp92I	GRCGYC	1 cut(s)	266
Kzo9I	GATC	5 cut(s)	127, 256, 373, 452, 1417
Lsp1109I	GCAGC	5 cut(s)	233, 236, 533, 758, 1345
LweI	GCATC	4 cut(s)	5, 615, 1181, 1438
MaeI	CTAG	3 cut(s)	231, 563, 603
MaeIII	GTNAC	2 cut(s)	648, 1267
MalI	GATC	5 cut(s)	129, 258, 375, 454, 1419
MboI	GATC	5 cut(s)	127, 256, 373, 452, 1417
MboII	GAAGA	7 cut(s)	16, 82, 302, 310, 1136, 1213, 1472
MflI	RGATCY	1 cut(s)	256
MhlI	GDGCHC	4 cut(s)	122, 942, 1317, 1348
MluCI	AATT	7 cut(s)	29, 301, 657, 664, 814, 1112, 1515
MlyI	GAGTC	1 cut(s)	1282
MmeI	TCCRAC	1 cut(s)	1206
MseI	TTAA	8 cut(s)	531, 663, 678, 710, 767, 1115, 1382, 1509
MslI	CAYNNNNRTG	2 cut(s)	320, 678
MspA1I	CMGCKG	1 cut(s)	1027
MspCI	CTTAAG	1 cut(s)	1508
MspI	CCGG	2 cut(s)	173, 1426
MspR9I	CCNGG	1 cut(s)	1222
Mva1269I	GAATGC	2 cut(s)	180, 635
MvaI	CCWGG	1 cut(s)	1222
NdeII	GATC	5 cut(s)	127, 256, 373, 452, 1417
NmeAIII	GCCGAG	1 cut(s)	1470
NmuCI	GTSAC	2 cut(s)	648, 1267
NspI	RCATGY	2 cut(s)	677, 1370
PaeR7I	CTCGAG	1 cut(s)	941
PagI	TCATGA	2 cut(s)	1164, 1309
PciI	ACATGT	2 cut(s)	673, 1366
PcsI	WCGNNNNNNNCGW	1 cut(s)	448
PctI	GAATGC	2 cut(s)	180, 635
PfeI	GAWTC	3 cut(s)	159, 277, 968
PflMI	CCANNNNNTGG	2 cut(s)	788, 792
PkrI	GCNGC	6 cut(s)	223, 226, 353, 523, 748, 1360
PleI	GAGTC	1 cut(s)	1282
PpsI	GAGTC	1 cut(s)	1282
PscI	ACATGT	2 cut(s)	673, 1366
PshBI	ATTAAT	2 cut(s)	710, 1115
Psp124BI	GAGCTC	3 cut(s)	122, 942, 1317
Psp6I	CCWGG	1 cut(s)	1220
PspGI	CCWGG	1 cut(s)	1220
PspPI	GGNCC	2 cut(s)	398, 1442
PsuI	RGATCY	1 cut(s)	256
PvuII	CAGCTG	1 cut(s)	1027
RsaI	GTAC	2 cut(s)	704, 909
RsaNI	GTAC	2 cut(s)	703, 908
RseI	CAYNNNNRTG	2 cut(s)	320, 678
SacI	GAGCTC	3 cut(s)	122, 942, 1317
SalI	GTCGAC	1 cut(s)	615
SaqAI	TTAA	8 cut(s)	531, 663, 678, 710, 767, 1115, 1382, 1509
SatI	GCNGC	6 cut(s)	222, 225, 352, 522, 747, 1359
Sau3AI	GATC	5 cut(s)	127, 256, 373, 452, 1417
Sau96I	GGNCC	2 cut(s)	398, 1442
ScaI	AGTACT	1 cut(s)	704
SchI	GAGTC	1 cut(s)	1282
ScrFI	CCNGG	1 cut(s)	1222
SduI	GDGCHC	4 cut(s)	122, 942, 1317, 1348
SfaNI	GCATC	4 cut(s)	5, 615, 1181, 1438
SfcI	CTRYAG	1 cut(s)	1547
Sfr274I	CTCGAG	1 cut(s)	941
SlaI	CTCGAG	1 cut(s)	941
SmiMI	CAYNNNNRTG	2 cut(s)	320, 678
SmlI	CTYRAG	6 cut(s)	212, 503, 698, 941, 1100, 1508
SmoI	CTYRAG	6 cut(s)	212, 503, 698, 941, 1100, 1508
SpeI	ACTAGT	1 cut(s)	230
Sse9I	AATT	7 cut(s)	29, 301, 657, 664, 814, 1112, 1515
SsiI	CCGC	4 cut(s)	247, 253, 352, 1058
SspMI	CTAG	3 cut(s)	231, 563, 603
SstI	GAGCTC	3 cut(s)	122, 942, 1317
StyD4I	CCNGG	1 cut(s)	1220
TaaI	ACNGT	3 cut(s)	414, 719, 1531
TaqI	TCGA	7 cut(s)	130, 305, 586, 616, 726, 942, 966
TaqII	GACCGA	1 cut(s)	1422
TasI	AATT	7 cut(s)	29, 301, 657, 664, 814, 1112, 1515
TatI	WGTACW	1 cut(s)	702
TauI	GCSGC	1 cut(s)	354
TfiI	GAWTC	3 cut(s)	159, 277, 968
Tru1I	TTAA	8 cut(s)	531, 663, 678, 710, 767, 1115, 1382, 1509
Tru9I	TTAA	8 cut(s)	531, 663, 678, 710, 767, 1115, 1382, 1509
TscAI	CASTG	4 cut(s)	169, 744, 1057, 1404
TseFI	GTSAC	2 cut(s)	648, 1267
TseI	GCWGC	5 cut(s)	221, 224, 521, 746, 1358
Tsp45I	GTSAC	2 cut(s)	648, 1267
TspGWI	ACGGA	1 cut(s)	973
TspRI	CASTG	4 cut(s)	169, 744, 1057, 1404
Van91I	CCANNNNNTGG	2 cut(s)	788, 792
Vha464I	CTTAAG	1 cut(s)	1508
VspI	ATTAAT	2 cut(s)	710, 1115
XapI	RAATTY	2 cut(s)	301, 657
XceI	RCATGY	2 cut(s)	677, 1370
XcmI	CCANNNNNNNNNTGG	1 cut(s)	789
XhoI	CTCGAG	1 cut(s)	941
XmiI	GTMKAC	4 cut(s)	269, 581, 616, 1062
XspI	CTAG	3 cut(s)	231, 563, 603
ZrmI	AGTACT	1 cut(s)	704

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.