Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0004077

Physical Location & Seq

Genomic Coordinates Reverse (-)

22911187 .. 22912424

Gene Structure 1238 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0167700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGAGTTGCTTCAACTGGTTGCTCTATTTAGCTGTTGCTTTGGCCGTGATACGCAACGAGCTTCTAGTTGATTCAGCTAGTGACAAGAAGCACCACAGCGGACCAGTTGTTAATGTGACCAAGCACCTCATGTTCCCAGATTTCAACCTCTCCTACAACCCCCGAATCTTGAATGATGTAAAGCTCTTAGGTCGTGCCAAGCTTGCTTCAAAAACCAGTGCTATACAAATCCCCGACGAGTCTCATGTCACTGATCTCAGACACCAAGCCGGCCGAGCCATCTACTCTTCTTCAATCCGACTCCTGGACCCTCACACCGAAACCCCTACCTCTTTCGAAACAACCTTCTCTTTTCAATTCCACAATGCCTCTTCATCTTCTCCTGAACGAATCCAAACTACTCAAAGCGGTGGTTATGATAACTACAAGGTTATAGCAATCGAATTTGACACACGTTTGAATCCAGAGTTTGGAGACCCTAATGATAACCATGTAGGTATCAACTTGGGGACTATTATCTCCACTGAAACAATCAACGCTTCTGATGTTGGCGTCTTCCTCAACGACGGTTCAGTCCACCGAGCTTGGATAAGCTACAACGGCTCACGCCGTTGGATGGAAATTCGTTTGGGATCAGACGACGGAAGTTACCCTGCAAAGCCAGTCTTCTCCGGATCTCTTGACCTCTCACCGTTTCTGAATGAGTACATGTTCGTTGGATTTTCGGTTTCCACAGGCAATCACACCGAAATCCACAGCGTGCTTTCTTGGAACTTCACTTCTGTTAGTCAAGCTTTTCTTCGTGTGCCGTCAATGGAGACATGTGAGAGCAAGATTGTTGTTACTGAAAACTCTCGTGCTGAGCCTCCCGGCACGTTCTTGATCTTTATAGCTGTGCTGGCACTTGCCATAGCTGTTATGCTTAGCCTTTACTATAACAGCAAGCGTAGAAGTGCAAATTCGGATAGTGCTAGTATAGTGTTGCTGGAGAAGAAGCAGAGACCGAGACCTCCAAACAAGCCTAGAAGCTTCACAATCTCGGAGATTTCATTGGCGACTAGGTCTTTCGGAGAGCTAGAGATACTTGGAGGTGGATCAAAAGGGGTGTGTTACCGAGGGAAGCTTCCGAACGGATGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00240 ko00983 ko01100 map00240 map00983 map01100

Pfam Domains

Protein Families

ADK

Protein Analysis

379

Amino Acids

41.85

Weight (kDa)

7.18

Isoelectric Point (pI)

43.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lectin_legB	PF00139	58 - 124	2.5e-07	Legume lectin domain
Lectin_legB	PF00139	136 - 263	4.6e-32	Legume lectin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004077)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60180 AT3G60180 AT5G26667 AT5G26667 AT5G26667 AT5G26667
fragaria_vesca	FvH4_6g07810 FvH4_6g07810 FvH4_6g07810
malus_domestica	MD04G1062600.v1.1 MD07G1087100.v1.1
prunus_persica	Prupe.2G114000_v2.0.a1 Prupe.2G114000_v2.0.a1 Prupe.2G114000_v2.0.a1 Prupe.2G114000_v2.0.a1
pyrus_communis	pycom04g05600
rosa_chinensis	RchiOBHm_Chr1g0343601 RchiOBHm_Chr3g0457521
rosa_laevigata	RLG00000028960
rosa_multiflora	Rmu_sc0000335.1_g000002 Rmu_sc0001290.1_g000001 Rmu_sc0007404.1_g000013 Rmu_sc0007404.1_g000014
rosa_roxburghii	Rroxscaffold_4G00310450 Rroxscaffold_6G00421800
rosa_rugosa	Rorug01G0167700 Rorug03G0020700
rosa_samantha	Rh1AG183900 Rh3BG083600 Rh3CG083800 Rh3DG085200
rosa_wichuraiana	Rw1G015230 Rw3G006990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	572
AccB7I	CCANNNNNTGG	1 cut(s)	470
AccIII	TCCGGA	1 cut(s)	671
AciI	CCGC	2 cut(s)	99, 408
AclWI	GGATC	3 cut(s)	640, 682, 1102
AcoI	YGGCCR	2 cut(s)	42, 271
AcsI	RAATTY	3 cut(s)	443, 621, 958
AcyI	GRCGYC	1 cut(s)	552
AdeI	CACNNNGTG	1 cut(s)	760
AfaI	GTAC	1 cut(s)	707
AfiI	CCNNNNNNNGG	3 cut(s)	304, 470, 616
AflIII	ACRYGT	3 cut(s)	452, 708, 821
AgsI	TTSAA	7 cut(s)	13, 145, 172, 210, 294, 356, 460
AjnI	CCWGG	1 cut(s)	303
Alw26I	GTCTC	5 cut(s)	246, 468, 812, 994, 1000
AlwI	GGATC	3 cut(s)	640, 682, 1102
Aor13HI	TCCGGA	1 cut(s)	671
AoxI	GGCC	2 cut(s)	42, 271
ApoI	RAATTY	3 cut(s)	443, 621, 958
AspS9I	GGNCC	2 cut(s)	101, 307
AsuC2I	CCSGG	1 cut(s)	870
AsuHPI	GGTGA	1 cut(s)	681
AsuII	TTCGAA	1 cut(s)	336
AvaII	GGWCC	2 cut(s)	101, 307
BauI	CACGAG	1 cut(s)	855
BbsI	GAAGAC	2 cut(s)	547, 658
BccI	CCATC	2 cut(s)	287, 610
BceAI	ACGGC	4 cut(s)	29, 594, 616, 793
BciT130I	CCWGG	1 cut(s)	305
BcnI	CCSGG	1 cut(s)	870
BcoDI	GTCTC	5 cut(s)	246, 468, 812, 994, 1000
BfaI	CTAG	6 cut(s)	65, 78, 972, 1023, 1059, 1076
BlpI	GCTNAGC	2 cut(s)	861, 923
Bme1390I	CCNGG	2 cut(s)	305, 870
Bme18I	GGWCC	2 cut(s)	101, 307
BmgT120I	GGNCC	2 cut(s)	101, 307
BmiI	GGNNCC	1 cut(s)	309
BmrFI	CCNGG	2 cut(s)	305, 870
BpiI	GAAGAC	2 cut(s)	547, 658
BpmI	CTGGAG	1 cut(s)	1007
Bpu1102I	GCTNAGC	2 cut(s)	861, 923
Bpu14I	TTCGAA	1 cut(s)	336
BpuMI	CCSGG	1 cut(s)	870
BsaHI	GRCGYC	1 cut(s)	552
BsaI	GGTCTC	3 cut(s)	468, 994, 1000
BsaJI	CCNNGG	1 cut(s)	1114
BsaWI	WCCGGW	1 cut(s)	671
Bsc4I	CCNNNNNNNGG	3 cut(s)	304, 470, 616
Bse118I	RCCGGY	1 cut(s)	269
Bse1I	ACTGG	4 cut(s)	20, 104, 216, 662
BseAI	TCCGGA	1 cut(s)	671
BseBI	CCWGG	1 cut(s)	305
BseDI	CCNNGG	1 cut(s)	1114
BseGI	GGATG	2 cut(s)	621, 1139
BseLI	CCNNNNNNNGG	3 cut(s)	304, 470, 616
BseMII	CTCAG	2 cut(s)	271, 852
BseNI	ACTGG	4 cut(s)	20, 104, 216, 662
BseX3I	CGGCCG	1 cut(s)	271
Bsh1285I	CGRYCG	1 cut(s)	274
BshFI	GGCC	2 cut(s)	44, 273
BsiEI	CGRYCG	1 cut(s)	274
BsiSI	CCGG	3 cut(s)	270, 672, 870
BslFI	GGGAC	1 cut(s)	523
BslI	CCNNNNNNNGG	3 cut(s)	304, 470, 616
BsmAI	GTCTC	5 cut(s)	246, 468, 812, 994, 1000
BsmFI	GGGAC	1 cut(s)	523
BsnI	GGCC	2 cut(s)	44, 273
Bso31I	GGTCTC	3 cut(s)	468, 994, 1000
Bsp119I	TTCGAA	1 cut(s)	336
Bsp13I	TCCGGA	1 cut(s)	671
Bsp143I	GATC	5 cut(s)	253, 632, 674, 882, 1094
Bsp1720I	GCTNAGC	2 cut(s)	861, 923
BspACI	CCGC	2 cut(s)	99, 408
BspANI	GGCC	2 cut(s)	44, 273
BspCNI	CTCAG	2 cut(s)	270, 853
BspEI	TCCGGA	1 cut(s)	671
BspLI	GGNNCC	1 cut(s)	309
BspPI	GGATC	3 cut(s)	640, 682, 1102
BspT104I	TTCGAA	1 cut(s)	336
BspTNI	GGTCTC	3 cut(s)	468, 994, 1000
BsrFI	RCCGGY	1 cut(s)	269
BsrI	ACTGG	4 cut(s)	20, 104, 216, 662
BssAI	RCCGGY	1 cut(s)	269
BssECI	CCNNGG	1 cut(s)	1114
BssMI	GATC	5 cut(s)	253, 632, 674, 882, 1094
BssNI	GRCGYC	1 cut(s)	552
BssSI	CACGAG	1 cut(s)	855
Bst2BI	CACGAG	1 cut(s)	855
Bst2UI	CCWGG	1 cut(s)	305
Bst4CI	ACNGT	2 cut(s)	569, 693
Bst6I	CTCTTC	2 cut(s)	292, 376
BstACI	GRCGYC	1 cut(s)	552
BstBI	TTCGAA	1 cut(s)	336
BstC8I	GCNNGC	5 cut(s)	204, 271, 761, 900, 944
BstDEI	CTNAG	4 cut(s)	187, 257, 861, 923
BstF5I	GGATG	2 cut(s)	621, 1139
BstKTI	GATC	5 cut(s)	256, 635, 677, 885, 1097
BstMAI	GTCTC	5 cut(s)	246, 468, 812, 994, 1000
BstMBI	GATC	5 cut(s)	253, 632, 674, 882, 1094
BstMCI	CGRYCG	1 cut(s)	274
BstMWI	GCNNNNNNNGC	4 cut(s)	203, 275, 600, 899
BstNI	CCWGG	1 cut(s)	305
BstNSI	RCATGY	2 cut(s)	712, 825
BstSCI	CCNGG	2 cut(s)	303, 868
BstV2I	GAAGAC	2 cut(s)	547, 658
BstX2I	RGATCY	1 cut(s)	674
BstYI	RGATCY	1 cut(s)	674
BstZI	CGGCCG	1 cut(s)	271
BsuRI	GGCC	2 cut(s)	44, 273
BtsCI	GGATG	2 cut(s)	621, 1139
BtsIMutI	CAGTG	3 cut(s)	223, 249, 522
Cac8I	GCNNGC	5 cut(s)	204, 271, 761, 900, 944
Cfr10I	RCCGGY	1 cut(s)	269
Cfr13I	GGNCC	2 cut(s)	101, 307
CseI	GACGC	1 cut(s)	541
Csp6I	GTAC	1 cut(s)	706
CspCI	CAANNNNNGTGG	2 cut(s)	566, 601
CviAII	CATG	5 cut(s)	130, 245, 491, 709, 822
CviQI	GTAC	1 cut(s)	706
DdeI	CTNAG	4 cut(s)	187, 257, 861, 923
DpnI	GATC	5 cut(s)	255, 634, 676, 884, 1096
DpnII	GATC	5 cut(s)	253, 632, 674, 882, 1094
DraIII	CACNNNGTG	1 cut(s)	760
DrdI	GACNNNNNNGTC	1 cut(s)	572
DseDI	GACNNNNNNGTC	1 cut(s)	572
EaeI	YGGCCR	2 cut(s)	42, 271
EagI	CGGCCG	1 cut(s)	271
Eam1104I	CTCTTC	2 cut(s)	292, 376
EarI	CTCTTC	2 cut(s)	292, 376
EclXI	CGGCCG	1 cut(s)	271
Eco31I	GGTCTC	3 cut(s)	468, 994, 1000
Eco47I	GGWCC	2 cut(s)	101, 307
Eco52I	CGGCCG	1 cut(s)	271
EcoRII	CCWGG	1 cut(s)	303
FaeI	CATG	5 cut(s)	133, 248, 494, 712, 825
FalI	AAGNNNNNCTT	4 cut(s)	650, 682, 783, 815
FaqI	GGGAC	1 cut(s)	523
FatI	CATG	5 cut(s)	129, 244, 490, 708, 821
FokI	GGATG	1 cut(s)	628
FspBI	CTAG	6 cut(s)	65, 78, 972, 1023, 1059, 1076
GsuI	CTGGAG	1 cut(s)	1007
HaeIII	GGCC	2 cut(s)	44, 273
HapII	CCGG	3 cut(s)	270, 672, 870
HgaI	GACGC	1 cut(s)	541
Hin1I	GRCGYC	1 cut(s)	552
Hin1II	CATG	5 cut(s)	133, 248, 494, 712, 825
HindIII	AAGCTT	4 cut(s)	200, 792, 1027, 1121
HinfI	GANTC	6 cut(s)	71, 165, 239, 300, 390, 460
HpaII	CCGG	3 cut(s)	270, 672, 870
HphI	GGTGA	1 cut(s)	681
Hpy166II	GTNNAC	1 cut(s)	577
Hpy188I	TCNGA	9 cut(s)	260, 299, 544, 637, 699, 964, 1042, 1070, 1128
Hpy188III	TCNNGA	6 cut(s)	169, 383, 464, 672, 680, 880
Hpy8I	GTNNAC	1 cut(s)	577
Hpy99I	CGWCG	3 cut(s)	239, 569, 644
HpyAV	CCTTC	1 cut(s)	355
HpyCH4III	ACNGT	2 cut(s)	569, 693
HpyCH4IV	ACGT	2 cut(s)	454, 875
HpyCH4V	TGCA	2 cut(s)	656, 956
HpyF10VI	GCNNNNNNNGC	4 cut(s)	203, 275, 600, 899
HpyF3I	CTNAG	4 cut(s)	187, 257, 861, 923
HpySE526I	ACGT	2 cut(s)	454, 875
Hsp92I	GRCGYC	1 cut(s)	552
Hsp92II	CATG	5 cut(s)	133, 248, 494, 712, 825
Kpn2I	TCCGGA	1 cut(s)	671
KroI	GCCGGC	1 cut(s)	269
KroNI	GCCGGC	1 cut(s)	271
Kzo9I	GATC	5 cut(s)	253, 632, 674, 882, 1094
MaeI	CTAG	6 cut(s)	65, 78, 972, 1023, 1059, 1076
MaeII	ACGT	2 cut(s)	454, 875
MaeIII	GTNAC	6 cut(s)	80, 115, 247, 647, 841, 1109
MalI	GATC	5 cut(s)	255, 634, 676, 884, 1096
MboI	GATC	5 cut(s)	253, 632, 674, 882, 1094
MboII	GAAGA	8 cut(s)	279, 282, 363, 369, 547, 658, 791, 1003
MflI	RGATCY	1 cut(s)	674
MluCI	AATT	4 cut(s)	356, 443, 621, 958
MlyI	GAGTC	2 cut(s)	248, 294
MmeI	TCCRAC	3 cut(s)	322, 593, 697
MroI	TCCGGA	1 cut(s)	671
MroNI	GCCGGC	1 cut(s)	269
MseI	TTAA	2 cut(s)	111, 1138
MspA1I	CMGCKG	1 cut(s)	99
MspI	CCGG	3 cut(s)	270, 672, 870
MspR9I	CCNGG	2 cut(s)	305, 870
MvaI	CCWGG	1 cut(s)	305
MwoI	GCNNNNNNNGC	4 cut(s)	203, 275, 600, 899
NaeI	GCCGGC	1 cut(s)	271
NciI	CCSGG	1 cut(s)	870
NdeII	GATC	5 cut(s)	253, 632, 674, 882, 1094
NgoMIV	GCCGGC	1 cut(s)	269
NlaIII	CATG	5 cut(s)	133, 248, 494, 712, 825
NlaIV	GGNNCC	1 cut(s)	309
NmeAIII	GCCGAG	1 cut(s)	299
NmuCI	GTSAC	3 cut(s)	80, 115, 247
NspI	RCATGY	2 cut(s)	712, 825
NspV	TTCGAA	1 cut(s)	336
PciI	ACATGT	2 cut(s)	708, 821
PdiI	GCCGGC	1 cut(s)	271
PfeI	GAWTC	4 cut(s)	71, 165, 390, 460
PflFI	GACNNNGTC	1 cut(s)	1060
PflMI	CCANNNNNTGG	1 cut(s)	470
PfoI	TCCNGGA	1 cut(s)	303
PleI	GAGTC	2 cut(s)	247, 294
PpsI	GAGTC	2 cut(s)	247, 294
PscI	ACATGT	2 cut(s)	708, 821
Psp6I	CCWGG	1 cut(s)	303
PspGI	CCWGG	1 cut(s)	303
PspN4I	GGNNCC	1 cut(s)	309
PspPI	GGNCC	2 cut(s)	101, 307
PsuI	RGATCY	1 cut(s)	674
PsyI	GACNNNGTC	1 cut(s)	1060
RsaI	GTAC	1 cut(s)	707
RsaNI	GTAC	1 cut(s)	706
SaqAI	TTAA	2 cut(s)	111, 1138
Sau3AI	GATC	5 cut(s)	253, 632, 674, 882, 1094
Sau96I	GGNCC	2 cut(s)	101, 307
SchI	GAGTC	2 cut(s)	248, 294
ScrFI	CCNGG	2 cut(s)	305, 870
SfuI	TTCGAA	1 cut(s)	336
SinI	GGWCC	2 cut(s)	101, 307
Sse9I	AATT	4 cut(s)	356, 443, 621, 958
SsiI	CCGC	2 cut(s)	99, 408
SspMI	CTAG	6 cut(s)	65, 78, 972, 1023, 1059, 1076
StyD4I	CCNGG	2 cut(s)	303, 868
TaaI	ACNGT	2 cut(s)	569, 693
TaiI	ACGT	2 cut(s)	457, 878
TaqI	TCGA	2 cut(s)	336, 441
TaqII	GACCGA	1 cut(s)	1018
TasI	AATT	4 cut(s)	356, 443, 621, 958
TatI	WGTACW	1 cut(s)	705
TfiI	GAWTC	4 cut(s)	71, 165, 390, 460
Tru1I	TTAA	2 cut(s)	111, 1138
Tru9I	TTAA	2 cut(s)	111, 1138
TscAI	CASTG	3 cut(s)	223, 256, 529
TseFI	GTSAC	3 cut(s)	80, 115, 247
Tsp45I	GTSAC	3 cut(s)	80, 115, 247
TspDTI	ATGAA	2 cut(s)	363, 1038
TspGWI	ACGGA	1 cut(s)	657
TspRI	CASTG	3 cut(s)	223, 256, 529
Tth111I	GACNNNGTC	1 cut(s)	1060
Van91I	CCANNNNNTGG	1 cut(s)	470
VpaK11BI	GGWCC	2 cut(s)	101, 307
XapI	RAATTY	3 cut(s)	443, 621, 958
XceI	RCATGY	2 cut(s)	712, 825
XspI	CTAG	6 cut(s)	65, 78, 972, 1023, 1059, 1076

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.