Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013416

Physical Location & Seq

Genomic Coordinates Forward (+)

22304152 .. 22306512

Gene Structure 2361 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G60340.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGGATTTTCTTAAGGCAACGATTATAGTTGCCCTAATTTGCAATTTCGCCTCACTGGCGTCTTCTGTTCCTTTCATAGTTCTGCATGGAATTGGGGATAAATGCAGTAATGCAGGAGTGACACAATTCACAGAGCTTTTAAGCGATTGGTCTGGTTCTCAAGGATATTGCTTGGAGATTGGGAATGGCTCATGGGACTCATGGACTATGCCTCTCCTTGATCAGACATCAGTTGTTTGTGAGAAGGTGAAAAGTATGCCAGAGCTTAGTGACGGTTACAGCATTGTGGGGCTTTCTCAGGGTAACATGATTGGTCGAGCTCTCATTGAGTTTTGCGATGGAGCACCACCTGTTAAGAGTTTTGTTTCGGTAGCGGGTCCTCATGCTGGCACTGCATCGATTCCGTTCTGTGGTGCTACCTGGATTTGCATCATGTTGGACAGTATGATCAAAGCAGAGATCTATAGCGACTATATGCAGGAACATTTGGCTCCTAGCGGTTTTCTCAAAATCCCAACTGACATAGCGGGTTACATGGAAGGCTGTAGGTTTCTCCCAAAGCTAAACAACGAACTTCCAGTCAAAAACTCGACTTATAAGGAGAGGTTCTCGAGTTTGGAGAATCTTGTGCTTATTATGTTTGAGCATGACACAATATTGATACCTAAAGAAACCTCATGGTTTGGATATTATCCTGATGGGTCTTTCAAGACCATTCTTCCGCCGCAAGAGACCAAGCTATATACTGAAGACTGGATTGGTTTGAGAACCTTAGATGAAGCTGGAAAAGTGAAGTTCGTTAACGTCTCTGGAAATCATCTTCAGATATCTCATACAGACATGAAGAAGCATATAGTGCCATACCTCTGTGATAAATCATCGTCGTCATCATCCACAACAATGGCAGTTTCCGGATCATCTTCCTCACACCAGTGGCTTCCAAGTGTAGGGAACATTATTATGGATCTTATTGGTCCAGAAGTGGATCAGCTTCAGCTTGTGCTACGTCATGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000323 GO:0002084 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0006464 GO:0006807 GO:0006810 GO:0006897 GO:0006898 GO:0006996 GO:0007005 GO:0007275 GO:0007610 GO:0008150 GO:0008152 GO:0008474 GO:0009056 GO:0009057 GO:0009791 GO:0009987 GO:0016043 GO:0016192 GO:0016787 GO:0016788 GO:0016790 GO:0018991 GO:0019098 GO:0019538 GO:0022414 GO:0030163 GO:0032501 GO:0032502 GO:0032504 GO:0035601 GO:0036211 GO:0042157 GO:0042159 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048609 GO:0048856 GO:0051179 GO:0051234 GO:0071704 GO:0071840 GO:0098599 GO:0098657 GO:0098732 GO:0098734 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00062 ko01100 ko01212 ko04142 map00062 map01100 map01212 map04142

Pfam Domains

Protein Families

Palm_thioest

Protein Analysis

338

Amino Acids

37.08

Weight (kDa)

5.15

Isoelectric Point (pI)

36.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Palm_thioest	PF02089	24 - 273	1.1e-73	Palmitoyl protein thioesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013416)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60340 AT3G60340
fragaria_vesca	FvH4_7g09920
malus_domestica	MD07G1104400.v1.1
prunus_persica	Prupe.2G128000_v2.0.a1 Prupe.2G128000_v2.0.a1
pyrus_communis	pycom07g08940
rosa_chinensis	RchiOBHm_Chr1g0347441
rosa_laevigata	RLG00000028747
rosa_multiflora	Rmu_sc0009756.1_g000009
rosa_roxburghii	Rroxscaffold_4G00307770
rosa_rugosa	Rorug01G0186900 Rorug01G0187000
rosa_samantha	Rh1AG204400 Rh1BG170100 Rh1CG189500 Rh1DG200500
rosa_wichuraiana	Rw1G017150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	597
AccIII	TCCGGA	1 cut(s)	911
AciI	CCGC	5 cut(s)	374, 498, 527, 722, 725
AclWI	GGATC	3 cut(s)	922, 972, 993
AcuI	CTGAAG	3 cut(s)	768, 806, 977
AcyI	GRCGYC	1 cut(s)	59
AfiI	CCNNNNNNNGG	3 cut(s)	386, 410, 947
AflII	CTTAAG	1 cut(s)	11
AgsI	TTSAA	1 cut(s)	709
AjnI	CCWGG	1 cut(s)	419
AjuI	GAANNNNNNNTTGG	2 cut(s)	741, 773
AleI	CACNNNNGTG	1 cut(s)	931
AluBI	AGCT	8 cut(s)	136, 265, 320, 562, 739, 782, 991, 997
AluI	AGCT	8 cut(s)	136, 265, 320, 562, 739, 782, 991, 997
Alw21I	GWGCWC	2 cut(s)	322, 346
Alw26I	GTCTC	2 cut(s)	725, 811
AlwI	GGATC	3 cut(s)	922, 972, 993
Ama87I	CYCGRG	1 cut(s)	610
Aor13HI	TCCGGA	1 cut(s)	911
ArsI	GACNNNNNNTTYG	2 cut(s)	564, 596
AspS9I	GGNCC	2 cut(s)	377, 974
AsuHPI	GGTGA	1 cut(s)	259
AvaI	CYCGRG	1 cut(s)	610
AvaII	GGWCC	2 cut(s)	377, 974
BanII	GRGCYC	1 cut(s)	322
BbsI	GAAGAC	2 cut(s)	54, 756
Bbv12I	GWGCWC	2 cut(s)	322, 346
BccI	CCATC	2 cut(s)	332, 692
BciT130I	CCWGG	1 cut(s)	421
BclI	TGATCA	2 cut(s)	220, 447
BcoDI	GTCTC	2 cut(s)	725, 811
BfaI	CTAG	1 cut(s)	495
BfmI	CTRYAG	2 cut(s)	463, 544
BfrI	CTTAAG	1 cut(s)	11
BglI	GCCNNNNNGGC	1 cut(s)	56
BglII	AGATCT	1 cut(s)	459
BisI	GCNGC	1 cut(s)	725
BlsI	GCNGC	1 cut(s)	726
Bme1390I	CCNGG	1 cut(s)	421
Bme18I	GGWCC	2 cut(s)	377, 974
BmeT110I	CYCGRG	1 cut(s)	610
BmgT120I	GGNCC	2 cut(s)	377, 974
BmiI	GGNNCC	2 cut(s)	378, 492
BmrFI	CCNGG	1 cut(s)	421
BmsI	GCATC	2 cut(s)	404, 438
BpiI	GAAGAC	2 cut(s)	54, 756
BplI	GAGNNNNNCTC	2 cut(s)	593, 625
BpuEI	CTTGAG	1 cut(s)	144
Bsa29I	ATCGAT	1 cut(s)	398
BsaBI	GATNNNNATC	1 cut(s)	428
BsaHI	GRCGYC	1 cut(s)	59
BsaI	GGTCTC	1 cut(s)	725
BsaWI	WCCGGW	1 cut(s)	911
Bsc4I	CCNNNNNNNGG	3 cut(s)	386, 410, 947
Bse1I	ACTGG	4 cut(s)	60, 578, 758, 931
Bse8I	GATNNNNATC	1 cut(s)	428
BseAI	TCCGGA	1 cut(s)	911
BseBI	CCWGG	1 cut(s)	421
BseCI	ATCGAT	1 cut(s)	398
BseGI	GGATG	1 cut(s)	890
BseJI	GATNNNNATC	1 cut(s)	428
BseLI	CCNNNNNNNGG	3 cut(s)	386, 410, 947
BseMII	CTCAG	1 cut(s)	311
BseNI	ACTGG	4 cut(s)	60, 578, 758, 931
BshVI	ATCGAT	1 cut(s)	398
BsiHKAI	GWGCWC	2 cut(s)	322, 346
BsiHKCI	CYCGRG	1 cut(s)	610
BsiSI	CCGG	1 cut(s)	912
BslFI	GGGAC	1 cut(s)	209
BslI	CCNNNNNNNGG	3 cut(s)	386, 410, 947
BsmAI	GTCTC	2 cut(s)	725, 811
BsmBI	CGTCTC	1 cut(s)	811
BsmFI	GGGAC	1 cut(s)	209
Bso31I	GGTCTC	1 cut(s)	725
BsoBI	CYCGRG	1 cut(s)	610
Bsp1286I	GDGCHC	2 cut(s)	322, 346
Bsp13I	TCCGGA	1 cut(s)	911
Bsp143I	GATC	6 cut(s)	220, 447, 459, 914, 964, 985
BspACI	CCGC	5 cut(s)	374, 498, 527, 722, 725
BspCNI	CTCAG	1 cut(s)	310
BspDI	ATCGAT	1 cut(s)	398
BspEI	TCCGGA	1 cut(s)	911
BspLI	GGNNCC	2 cut(s)	378, 492
BspPI	GGATC	3 cut(s)	922, 972, 993
BspTI	CTTAAG	1 cut(s)	11
BspTNI	GGTCTC	1 cut(s)	725
BsrI	ACTGG	4 cut(s)	60, 578, 758, 931
BssMI	GATC	6 cut(s)	220, 447, 459, 914, 964, 985
BssNI	GRCGYC	1 cut(s)	59
Bst2UI	CCWGG	1 cut(s)	421
Bst4CI	ACNGT	2 cut(s)	275, 443
BstACI	GRCGYC	1 cut(s)	59
BstAFI	CTTAAG	1 cut(s)	11
BstAPI	GCANNNNNTGC	1 cut(s)	856
BstC8I	GCNNGC	1 cut(s)	388
BstDEI	CTNAG	3 cut(s)	266, 297, 772
BstF5I	GGATG	1 cut(s)	890
BstKTI	GATC	6 cut(s)	223, 450, 462, 917, 967, 988
BstMAI	GTCTC	2 cut(s)	725, 811
BstMBI	GATC	6 cut(s)	220, 447, 459, 914, 964, 985
BstMWI	GCNNNNNNNGC	3 cut(s)	56, 392, 856
BstNI	CCWGG	1 cut(s)	421
BstSCI	CCNGG	1 cut(s)	419
BstSFI	CTRYAG	2 cut(s)	463, 544
BstV2I	GAAGAC	2 cut(s)	54, 756
BstX2I	RGATCY	2 cut(s)	459, 964
BstXI	CCANNNNNNTGG	1 cut(s)	901
BstYI	RGATCY	2 cut(s)	459, 964
Bsu15I	ATCGAT	1 cut(s)	398
BsuTUI	ATCGAT	1 cut(s)	398
BtgZI	GCGATG	1 cut(s)	351
BtsCI	GGATG	1 cut(s)	890
BtsI	GCAGTG	1 cut(s)	390
BtsIMutI	CAGTG	3 cut(s)	53, 390, 938
Cac8I	GCNNGC	1 cut(s)	388
Cfr13I	GGNCC	2 cut(s)	377, 974
ClaI	ATCGAT	1 cut(s)	398
CseI	GACGC	1 cut(s)	48
DdeI	CTNAG	3 cut(s)	266, 297, 772
DpnI	GATC	6 cut(s)	222, 449, 461, 916, 966, 987
DpnII	GATC	6 cut(s)	220, 447, 459, 914, 964, 985
EciI	GGCGGA	1 cut(s)	711
Ecl136II	GAGCTC	1 cut(s)	320
Eco24I	GRGCYC	1 cut(s)	322
Eco31I	GGTCTC	1 cut(s)	725
Eco32I	GATATC	1 cut(s)	828
Eco47I	GGWCC	2 cut(s)	377, 974
Eco53kI	GAGCTC	1 cut(s)	320
Eco57I	CTGAAG	3 cut(s)	768, 806, 977
Eco88I	CYCGRG	1 cut(s)	610
EcoICRI	GAGCTC	1 cut(s)	320
EcoO109I	RGGNCCY	1 cut(s)	377
EcoRII	CCWGG	1 cut(s)	419
EcoRV	GATATC	1 cut(s)	828
EcoT38I	GRGCYC	1 cut(s)	322
Esp3I	CGTCTC	1 cut(s)	811
FaqI	GGGAC	1 cut(s)	209
FauI	CCCGC	2 cut(s)	367, 520
FbaI	TGATCA	2 cut(s)	220, 447
Fnu4HI	GCNGC	1 cut(s)	725
FokI	GGATG	1 cut(s)	877
FriOI	GRGCYC	1 cut(s)	322
Fsp4HI	GCNGC	1 cut(s)	725
FspBI	CTAG	1 cut(s)	495
GluI	GCNGC	1 cut(s)	725
HapII	CCGG	1 cut(s)	912
HgaI	GACGC	1 cut(s)	48
Hin1I	GRCGYC	1 cut(s)	59
HincII	GTYRAC	1 cut(s)	802
HindII	GTYRAC	1 cut(s)	802
HinfI	GANTC	3 cut(s)	197, 400, 622
HpaI	GTTAAC	1 cut(s)	802
HpaII	CCGG	1 cut(s)	912
HphI	GGTGA	1 cut(s)	259
Hpy166II	GTNNAC	1 cut(s)	802
Hpy188I	TCNGA	2 cut(s)	225, 825
Hpy188III	TCNNGA	6 cut(s)	610, 695, 709, 810, 912, 977
Hpy8I	GTNNAC	1 cut(s)	802
Hpy99I	CGWCG	1 cut(s)	886
HpyAV	CCTTC	2 cut(s)	238, 533
HpyCH4III	ACNGT	2 cut(s)	275, 443
HpyCH4IV	ACGT	2 cut(s)	804, 1006
HpyCH4V	TGCA	7 cut(s)	42, 85, 105, 113, 395, 429, 478
HpyF10VI	GCNNNNNNNGC	3 cut(s)	56, 392, 856
HpyF3I	CTNAG	3 cut(s)	266, 297, 772
HpySE526I	ACGT	2 cut(s)	804, 1006
Hsp92I	GRCGYC	1 cut(s)	59
Kpn2I	TCCGGA	1 cut(s)	911
Ksp22I	TGATCA	2 cut(s)	220, 447
KspAI	GTTAAC	1 cut(s)	802
Kzo9I	GATC	6 cut(s)	220, 447, 459, 914, 964, 985
LmnI	GCTCC	2 cut(s)	341, 496
LweI	GCATC	2 cut(s)	404, 438
MaeI	CTAG	1 cut(s)	495
MaeII	ACGT	2 cut(s)	804, 1006
MaeIII	GTNAC	5 cut(s)	118, 269, 275, 302, 530
MalI	GATC	6 cut(s)	222, 449, 461, 916, 966, 987
MboI	GATC	6 cut(s)	220, 447, 459, 914, 964, 985
MboII	GAAGA	6 cut(s)	54, 710, 761, 812, 856, 912
MflI	RGATCY	2 cut(s)	459, 964
MhlI	GDGCHC	2 cut(s)	322, 346
MluCI	AATT	4 cut(s)	36, 43, 90, 125
MlyI	GAGTC	1 cut(s)	191
MmeI	TCCRAC	1 cut(s)	417
MnlI	CCTC	7 cut(s)	61, 222, 390, 597, 685, 875, 934
MroI	TCCGGA	1 cut(s)	911
MseI	TTAA	4 cut(s)	12, 140, 354, 801
MslI	CAYNNNNRTG	3 cut(s)	899, 931, 959
MspCI	CTTAAG	1 cut(s)	11
MspI	CCGG	1 cut(s)	912
MspR9I	CCNGG	1 cut(s)	421
MvaI	CCWGG	1 cut(s)	421
MwoI	GCNNNNNNNGC	3 cut(s)	56, 392, 856
NdeII	GATC	6 cut(s)	220, 447, 459, 914, 964, 985
NlaIV	GGNNCC	2 cut(s)	378, 492
NmuCI	GTSAC	2 cut(s)	118, 269
OliI	CACNNNNGTG	1 cut(s)	931
PaeR7I	CTCGAG	1 cut(s)	610
PfeI	GAWTC	2 cut(s)	400, 622
PkrI	GCNGC	1 cut(s)	726
PleI	GAGTC	1 cut(s)	191
PpsI	GAGTC	1 cut(s)	191
PpuMI	RGGWCCY	1 cut(s)	377
PsiI	TTATAA	1 cut(s)	597
Psp124BI	GAGCTC	1 cut(s)	322
Psp5II	RGGWCCY	1 cut(s)	377
Psp6I	CCWGG	1 cut(s)	419
PspGI	CCWGG	1 cut(s)	419
PspN4I	GGNNCC	2 cut(s)	378, 492
PspPI	GGNCC	2 cut(s)	377, 974
PspPPI	RGGWCCY	1 cut(s)	377
PsuI	RGATCY	2 cut(s)	459, 964
RseI	CAYNNNNRTG	3 cut(s)	899, 931, 959
SacI	GAGCTC	1 cut(s)	322
SaqAI	TTAA	4 cut(s)	12, 140, 354, 801
SatI	GCNGC	1 cut(s)	725
Sau3AI	GATC	6 cut(s)	220, 447, 459, 914, 964, 985
Sau96I	GGNCC	2 cut(s)	377, 974
SchI	GAGTC	1 cut(s)	191
ScrFI	CCNGG	1 cut(s)	421
SduI	GDGCHC	2 cut(s)	322, 346
SfaNI	GCATC	2 cut(s)	404, 438
SfcI	CTRYAG	2 cut(s)	463, 544
Sfr274I	CTCGAG	1 cut(s)	610
SinI	GGWCC	2 cut(s)	377, 974
SlaI	CTCGAG	1 cut(s)	610
SmiMI	CAYNNNNRTG	3 cut(s)	899, 931, 959
SmlI	CTYRAG	3 cut(s)	11, 159, 610
SmoI	CTYRAG	3 cut(s)	11, 159, 610
Sse9I	AATT	4 cut(s)	36, 43, 90, 125
SsiI	CCGC	5 cut(s)	374, 498, 527, 722, 725
SspI	AATATT	1 cut(s)	657
SspMI	CTAG	1 cut(s)	495
SstI	GAGCTC	1 cut(s)	322
StyD4I	CCNGG	1 cut(s)	419
TaaI	ACNGT	2 cut(s)	275, 443
TaiI	ACGT	2 cut(s)	807, 1009
TaqI	TCGA	4 cut(s)	316, 398, 590, 611
TasI	AATT	4 cut(s)	36, 43, 90, 125
TauI	GCSGC	1 cut(s)	727
TfiI	GAWTC	2 cut(s)	400, 622
Tru1I	TTAA	4 cut(s)	12, 140, 354, 801
Tru9I	TTAA	4 cut(s)	12, 140, 354, 801
TscAI	CASTG	3 cut(s)	60, 397, 938
TseFI	GTSAC	2 cut(s)	118, 269
Tsp45I	GTSAC	2 cut(s)	118, 269
TspDTI	ATGAA	3 cut(s)	64, 792, 857
TspGWI	ACGGA	1 cut(s)	393
TspRI	CASTG	3 cut(s)	60, 397, 938
Vha464I	CTTAAG	1 cut(s)	11
VpaK11BI	GGWCC	2 cut(s)	377, 974
XhoI	CTCGAG	1 cut(s)	610
XspI	CTAG	1 cut(s)	495

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.