Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0013416

Physical Location & Seq

Genomic Coordinates Forward (+)

25860306 .. 25861039

Gene Structure 734 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0187000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGCAGCAAAAGTGTACACACCAGCAGTGTTTCAATGGTTCCAAGTTGAGTTGTGTAAAGCTCATGACTATTCTCTCGACAAATAATATCAAGACCATTCCTAGTCAACACATCTCAAAGAGATGGACAAAGGATATTAGAGATCAAAGAGCAAAGGTGTCTTGTCCAAATGCAAATGATGATGACCAGAAAGCAAAAATAGCAAGGCTTTACAGAGAATTGGCTCGATTACATACTGAACTTGCAACAAGTACTGCTGAATCTGATGAAGCTTATGAAATTGCTACAGTGGCCCTTCACAAGACATTAGCAGATGTTAAGGCATCTTTAAAGAAAAAGATCAATCAAGAAGCACCTCAAGTTGCCTCACCGATCATCAATAGTGCACTTGAGGTTATTTTTGATAATTTTGATGATCATAGGGTCAGAGGAATCAAGGTTAAAGAAAGAATTGTTCGTAAGGAGGAATTTGTTAGACCAAAGAATGCTCTGGAAAAGCTTTTAGGAAACAAAAGGCATAAGAAAGAGGTAGATACTTATCGAGACACCAAAGAGAACCAAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000323 GO:0002084 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0006464 GO:0006807 GO:0006810 GO:0006897 GO:0006898 GO:0006996 GO:0007005 GO:0007275 GO:0007610 GO:0008150 GO:0008152 GO:0008474 GO:0009056 GO:0009057 GO:0009791 GO:0009987 GO:0016043 GO:0016192 GO:0016787 GO:0016788 GO:0016790 GO:0018991 GO:0019098 GO:0019538 GO:0022414 GO:0030163 GO:0032501 GO:0032502 GO:0032504 GO:0035601 GO:0036211 GO:0042157 GO:0042159 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048609 GO:0048856 GO:0051179 GO:0051234 GO:0071704 GO:0071840 GO:0098599 GO:0098657 GO:0098732 GO:0098734 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00062 ko01100 ko01212 ko04142 map00062 map01100 map01212 map04142

Pfam Domains

Protein Families

Palm_thioest

Protein Analysis

188

Amino Acids

21.58

Weight (kDa)

9.55

Isoelectric Point (pI)

31.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013416)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60340 AT3G60340
fragaria_vesca	FvH4_7g09920
malus_domestica	MD07G1104400.v1.1
prunus_persica	Prupe.2G128000_v2.0.a1 Prupe.2G128000_v2.0.a1
pyrus_communis	pycom07g08940
rosa_chinensis	RchiOBHm_Chr1g0347441
rosa_laevigata	RLG00000028747
rosa_multiflora	Rmu_sc0009756.1_g000009
rosa_roxburghii	Rroxscaffold_4G00307770
rosa_rugosa	Rorug01G0186900 Rorug01G0187000
rosa_samantha	Rh1AG204400 Rh1BG170100 Rh1CG189500 Rh1DG200500
rosa_wichuraiana	Rw1G017150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	467
AfaI	GTAC	2 cut(s)	16, 253
AgsI	TTSAA	1 cut(s)	34
AluBI	AGCT	3 cut(s)	61, 272, 499
AluI	AGCT	3 cut(s)	61, 272, 499
Alw21I	GWGCWC	1 cut(s)	388
Alw26I	GTCTC	1 cut(s)	537
Alw44I	GTGCAC	1 cut(s)	384
AoxI	GGCC	1 cut(s)	291
ApaLI	GTGCAC	1 cut(s)	384
ApeKI	GCWGC	1 cut(s)	4
ApoI	RAATTY	1 cut(s)	467
AspS9I	GGNCC	1 cut(s)	292
AsuHPI	GGTGA	1 cut(s)	360
BaeGI	GKGCMC	1 cut(s)	388
Bbv12I	GWGCWC	1 cut(s)	388
BbvI	GCAGC	1 cut(s)	16
BccI	CCATC	1 cut(s)	117
BclI	TGATCA	1 cut(s)	415
BcoDI	GTCTC	1 cut(s)	537
BfaI	CTAG	1 cut(s)	102
BfmI	CTRYAG	1 cut(s)	285
BisI	GCNGC	1 cut(s)	5
BlsI	GCNGC	1 cut(s)	6
BmcAI	AGTACT	1 cut(s)	253
BmgT120I	GGNCC	1 cut(s)	292
BmiI	GGNNCC	1 cut(s)	40
BmsI	GCATC	1 cut(s)	332
BpuEI	CTTGAG	2 cut(s)	342, 410
BsaBI	GATNNNNATC	1 cut(s)	537
Bse8I	GATNNNNATC	1 cut(s)	537
BseJI	GATNNNNATC	1 cut(s)	537
BseSI	GKGCMC	1 cut(s)	388
BseXI	GCAGC	1 cut(s)	16
BshFI	GGCC	1 cut(s)	293
BsiHKAI	GWGCWC	1 cut(s)	388
BsmAI	GTCTC	1 cut(s)	537
BsmI	GAATGC	1 cut(s)	490
BsnI	GGCC	1 cut(s)	293
Bsp1286I	GDGCHC	1 cut(s)	388
Bsp1407I	TGTACA	1 cut(s)	14
Bsp143I	GATC	4 cut(s)	142, 339, 372, 415
BspANI	GGCC	1 cut(s)	293
BspHI	TCATGA	1 cut(s)	63
BspLI	GGNNCC	1 cut(s)	40
BsrGI	TGTACA	1 cut(s)	14
BssMI	GATC	4 cut(s)	142, 339, 372, 415
Bst4CI	ACNGT	1 cut(s)	289
BstAUI	TGTACA	1 cut(s)	14
BstKTI	GATC	4 cut(s)	145, 342, 375, 418
BstMAI	GTCTC	1 cut(s)	537
BstMBI	GATC	4 cut(s)	142, 339, 372, 415
BstMWI	GCNNNNNNNGC	2 cut(s)	200, 290
BstSFI	CTRYAG	1 cut(s)	285
BstSLI	GKGCMC	1 cut(s)	388
BstV1I	GCAGC	1 cut(s)	16
BsuRI	GGCC	1 cut(s)	293
BtsI	GCAGTG	1 cut(s)	32
BtsIMutI	CAGTG	2 cut(s)	32, 294
CciI	TCATGA	1 cut(s)	63
Cfr13I	GGNCC	1 cut(s)	292
Csp6I	GTAC	2 cut(s)	15, 252
CviAII	CATG	1 cut(s)	64
CviJI	RGCY	6 cut(s)	61, 208, 224, 272, 293, 499
CviKI_1	RGCY	6 cut(s)	61, 208, 224, 272, 293, 499
CviQI	GTAC	2 cut(s)	15, 252
DpnI	GATC	4 cut(s)	144, 341, 374, 417
DpnII	GATC	4 cut(s)	142, 339, 372, 415
DraI	TTTAAA	1 cut(s)	330
FaeI	CATG	1 cut(s)	67
FaiI	YATR	5 cut(s)	65, 234, 276, 420, 519
FatI	CATG	1 cut(s)	63
FbaI	TGATCA	1 cut(s)	415
Fnu4HI	GCNGC	1 cut(s)	5
Fsp4HI	GCNGC	1 cut(s)	5
FspBI	CTAG	1 cut(s)	102
GluI	GCNGC	1 cut(s)	5
HaeIII	GGCC	1 cut(s)	293
Hin1II	CATG	1 cut(s)	67
HincII	GTYRAC	1 cut(s)	107
HindII	GTYRAC	1 cut(s)	107
HindIII	AAGCTT	2 cut(s)	270, 497
HinfI	GANTC	2 cut(s)	260, 432
HphI	GGTGA	1 cut(s)	360
Hpy166II	GTNNAC	4 cut(s)	15, 17, 107, 386
Hpy188I	TCNGA	2 cut(s)	265, 428
Hpy188III	TCNNGA	6 cut(s)	64, 76, 91, 347, 491, 542
Hpy8I	GTNNAC	4 cut(s)	15, 17, 107, 386
HpyAV	CCTTC	1 cut(s)	305
HpyCH4III	ACNGT	1 cut(s)	289
HpyCH4V	TGCA	4 cut(s)	4, 173, 245, 386
HpyF10VI	GCNNNNNNNGC	2 cut(s)	200, 290
Hsp92II	CATG	1 cut(s)	67
Ksp22I	TGATCA	1 cut(s)	415
Kzo9I	GATC	4 cut(s)	142, 339, 372, 415
LpnPI	CCDG	3 cut(s)	35, 200, 476
Lsp1109I	GCAGC	1 cut(s)	16
LweI	GCATC	1 cut(s)	332
MaeI	CTAG	1 cut(s)	102
MalI	GATC	4 cut(s)	144, 341, 374, 417
MboI	GATC	4 cut(s)	142, 339, 372, 415
MhlI	GDGCHC	1 cut(s)	388
MluCI	AATT	6 cut(s)	218, 279, 406, 450, 467, 562
MnlI	CCTC	6 cut(s)	366, 376, 385, 422, 457, 520
MseI	TTAA	3 cut(s)	318, 329, 441
Mva1269I	GAATGC	1 cut(s)	490
MwoI	GCNNNNNNNGC	2 cut(s)	200, 290
NdeII	GATC	4 cut(s)	142, 339, 372, 415
NlaIII	CATG	1 cut(s)	67
NlaIV	GGNNCC	1 cut(s)	40
PagI	TCATGA	1 cut(s)	63
PctI	GAATGC	1 cut(s)	490
PfeI	GAWTC	2 cut(s)	260, 432
PkrI	GCNGC	1 cut(s)	6
PspN4I	GGNNCC	1 cut(s)	40
PspPI	GGNCC	1 cut(s)	292
RsaI	GTAC	2 cut(s)	16, 253
RsaNI	GTAC	2 cut(s)	15, 252
SaqAI	TTAA	3 cut(s)	318, 329, 441
SatI	GCNGC	1 cut(s)	5
Sau3AI	GATC	4 cut(s)	142, 339, 372, 415
Sau96I	GGNCC	1 cut(s)	292
ScaI	AGTACT	1 cut(s)	253
SduI	GDGCHC	1 cut(s)	388
SetI	ASST	8 cut(s)	63, 159, 274, 358, 396, 441, 501, 531
SfaNI	GCATC	1 cut(s)	332
SfcI	CTRYAG	1 cut(s)	285
SmlI	CTYRAG	2 cut(s)	357, 389
SmoI	CTYRAG	2 cut(s)	357, 389
Sse9I	AATT	6 cut(s)	218, 279, 406, 450, 467, 562
SspMI	CTAG	1 cut(s)	102
TaaI	ACNGT	1 cut(s)	289
TaqI	TCGA	3 cut(s)	77, 226, 541
TasI	AATT	6 cut(s)	218, 279, 406, 450, 467, 562
TatI	WGTACW	2 cut(s)	14, 251
TfiI	GAWTC	2 cut(s)	260, 432
Tru1I	TTAA	3 cut(s)	318, 329, 441
Tru9I	TTAA	3 cut(s)	318, 329, 441
TscAI	CASTG	2 cut(s)	32, 294
TseI	GCWGC	1 cut(s)	4
TspDTI	ATGAA	2 cut(s)	282, 291
TspRI	CASTG	2 cut(s)	32, 294
VneI	GTGCAC	1 cut(s)	384
XapI	RAATTY	1 cut(s)	467
XspI	CTAG	1 cut(s)	102
ZrmI	AGTACT	1 cut(s)	253

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.