Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0013416

Physical Location & Seq

Genomic Coordinates Reverse (-)

38782622 .. 38788154

Gene Structure 5533 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG204400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGAATAACATAAGCCTTGTTTCTGAATGTACTTGTTTCCTTCTTCTCTATAGAGAAATTGGGGATGGATCATGGGATTCCTGGACAATGCCTTTACTGGAACAGACAGCTATTGCTTGTGAGAAGGTTAAAACTATGAGTGAATTAAGTGACGGTTACAACATAGTTGGACTTTCTCAGGGTAACATGGTTGGTAGAGGAGTAGTTGAATTTTGTGATGGTGGACCTCCTGTCAGAAATTTTGTATCACTAGCAGGTCCCCACGCCGGTACCGCTTCTATTCCATTTTGTGGATCCGAGTGGCTTTGTGTTCTTCTGGATGACTTAATCAAGTCAGAGATCTACAGCAGCTTTATCCAGGAACATTTGGCTCCAAGTGGTTATGTTAAAATCCCTACTGATATAGCTGCCTATCTAAAAGGGTGTACATTTCTTCCAAAGCTGAACAATGAAATCAATTTTACAAGAAATTCCACATATAAGGAACGATTTGCAAGCTTAGAGAATTTGGTGCTTATTATGTTTGAGCAAGACACCATATTGATACCCAAGGAGACCTCCTGGTTTGGATATTTCCCAGATGGGGCCTATAATCCTATATTGCCTGCACAAGAGACCGAGCTGTACATTGAAGACTGGATTGGTTTGAAAACCTTGGACGAAGCTGGTAAAGTCAAGTTCATAAACGTGTCAGGTAATCATCTGGCCATCACGAGAAGTGACATGAAAAAGTATGTTGTGCCGTACTTGGAAGATGGAACATCAATGCAAACGATGATAGCAGAGCCCTCATCACAGAAATTACTTTCATCAGCTTGGAACTTCCTCTTGGAATTTGCTGGGCTCAAAGAGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000323 GO:0002084 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0006464 GO:0006807 GO:0006810 GO:0006897 GO:0006898 GO:0006996 GO:0007005 GO:0007275 GO:0007610 GO:0008150 GO:0008152 GO:0008474 GO:0009056 GO:0009057 GO:0009791 GO:0009987 GO:0016043 GO:0016192 GO:0016787 GO:0016788 GO:0016790 GO:0018991 GO:0019098 GO:0019538 GO:0022414 GO:0030163 GO:0032501 GO:0032502 GO:0032504 GO:0035601 GO:0036211 GO:0042157 GO:0042159 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048609 GO:0048856 GO:0051179 GO:0051234 GO:0071704 GO:0071840 GO:0098599 GO:0098657 GO:0098732 GO:0098734 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00062 ko01100 ko01212 ko04142 map00062 map01100 map01212 map04142

Pfam Domains

Protein Families

Palm_thioest

Protein Analysis

285

Amino Acids

31.75

Weight (kDa)

4.63

Isoelectric Point (pI)

39.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Palm_thioest	PF02089	26 - 234	1.1e-67	Palmitoyl protein thioesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013416)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60340 AT3G60340
fragaria_vesca	FvH4_7g09920
malus_domestica	MD07G1104400.v1.1
prunus_persica	Prupe.2G128000_v2.0.a1 Prupe.2G128000_v2.0.a1
pyrus_communis	pycom07g08940
rosa_chinensis	RchiOBHm_Chr1g0347441
rosa_laevigata	RLG00000028747
rosa_multiflora	Rmu_sc0009756.1_g000009
rosa_roxburghii	Rroxscaffold_4G00307770
rosa_rugosa	Rorug01G0186900 Rorug01G0187000
rosa_samantha	Rh1AG204400 Rh1BG170100 Rh1CG189500 Rh1DG200500
rosa_wichuraiana	Rw1G017150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	245
Acc65I	GGTACC	1 cut(s)	269
AccB1I	GGYRCC	1 cut(s)	269
AccB7I	CCANNNNNTGG	1 cut(s)	290
AciI	CCGC	1 cut(s)	273
AclWI	GGATC	3 cut(s)	76, 288, 301
AcoI	YGGCCR	1 cut(s)	705
AcsI	RAATTY	5 cut(s)	209, 238, 469, 505, 833
AfaI	GTAC	5 cut(s)	31, 271, 427, 626, 746
AfiI	CCNNNNNNNGG	3 cut(s)	266, 290, 583
AflIII	ACRYGT	1 cut(s)	687
AgsI	TTSAA	3 cut(s)	209, 632, 649
AhdI	GACNNNNNGTC	1 cut(s)	230
AjnI	CCWGG	3 cut(s)	80, 357, 560
AjuI	GAANNNNNNNTTGG	4 cut(s)	624, 656, 812, 844
AluBI	AGCT	8 cut(s)	110, 351, 407, 442, 498, 622, 665, 815
AluI	AGCT	8 cut(s)	110, 351, 407, 442, 498, 622, 665, 815
Alw26I	GTCTC	2 cut(s)	548, 608
AlwI	GGATC	3 cut(s)	76, 288, 301
AoxI	GGCC	2 cut(s)	585, 705
ApeKI	GCWGC	2 cut(s)	348, 407
ApoI	RAATTY	5 cut(s)	209, 238, 469, 505, 833
Asp718I	GGTACC	1 cut(s)	269
AspS9I	GGNCC	3 cut(s)	224, 257, 585
AvaII	GGWCC	2 cut(s)	224, 257
BaeI	ACNNNNGTAYC	2 cut(s)	253, 286
BalI	TGGCCA	1 cut(s)	707
BamHI	GGATCC	1 cut(s)	293
BanI	GGYRCC	1 cut(s)	269
BanII	GRGCYC	2 cut(s)	789, 846
BauI	CACGAG	1 cut(s)	712
BbsI	GAAGAC	1 cut(s)	639
BbvI	GCAGC	2 cut(s)	360, 394
BccI	CCATC	5 cut(s)	59, 212, 575, 716, 749
BceAI	ACGGC	1 cut(s)	727
BciT130I	CCWGG	3 cut(s)	82, 359, 562
BcoDI	GTCTC	2 cut(s)	548, 608
BfaI	CTAG	1 cut(s)	251
BfmI	CTRYAG	2 cut(s)	49, 343
BfuAI	ACCTGC	1 cut(s)	245
BglII	AGATCT	1 cut(s)	339
BisI	GCNGC	2 cut(s)	349, 408
BlsI	GCNGC	2 cut(s)	350, 409
Bme1390I	CCNGG	3 cut(s)	82, 359, 562
Bme18I	GGWCC	2 cut(s)	224, 257
BmeRI	GACNNNNNGTC	1 cut(s)	230
BmgT120I	GGNCC	3 cut(s)	224, 257, 585
BmiI	GGNNCC	5 cut(s)	259, 271, 295, 372, 586
BmrFI	CCNGG	3 cut(s)	82, 359, 562
BpiI	GAAGAC	1 cut(s)	639
BsaI	GGTCTC	2 cut(s)	548, 608
BsaJI	CCNNGG	2 cut(s)	549, 654
Bsc4I	CCNNNNNNNGG	3 cut(s)	266, 290, 583
Bse118I	RCCGGY	1 cut(s)	266
Bse1I	ACTGG	2 cut(s)	102, 641
BseBI	CCWGG	3 cut(s)	82, 359, 562
BseDI	CCNNGG	2 cut(s)	549, 654
BseGI	GGATG	2 cut(s)	70, 325
BseLI	CCNNNNNNNGG	3 cut(s)	266, 290, 583
BseMII	CTCAG	1 cut(s)	191
BseNI	ACTGG	2 cut(s)	102, 641
BseRI	GAGGAG	1 cut(s)	213
BseXI	GCAGC	2 cut(s)	360, 394
BseYI	CCCAGC	1 cut(s)	839
BsgI	GTGCAG	1 cut(s)	591
BshFI	GGCC	2 cut(s)	587, 707
BshNI	GGYRCC	1 cut(s)	269
BsiSI	CCGG	1 cut(s)	267
BslFI	GGGAC	1 cut(s)	243
BslI	CCNNNNNNNGG	3 cut(s)	266, 290, 583
BsmAI	GTCTC	2 cut(s)	548, 608
BsmFI	GGGAC	1 cut(s)	243
BsnI	GGCC	2 cut(s)	587, 707
Bso31I	GGTCTC	2 cut(s)	548, 608
Bsp1286I	GDGCHC	2 cut(s)	789, 846
Bsp1407I	TGTACA	2 cut(s)	425, 624
Bsp143I	GATC	3 cut(s)	68, 293, 339
BspACI	CCGC	1 cut(s)	273
BspANI	GGCC	2 cut(s)	587, 707
BspCNI	CTCAG	1 cut(s)	190
BspLI	GGNNCC	5 cut(s)	259, 271, 295, 372, 586
BspMI	ACCTGC	1 cut(s)	245
BspPI	GGATC	3 cut(s)	76, 288, 301
BspT107I	GGYRCC	1 cut(s)	269
BspTNI	GGTCTC	2 cut(s)	548, 608
BsrFI	RCCGGY	1 cut(s)	266
BsrGI	TGTACA	2 cut(s)	425, 624
BsrI	ACTGG	2 cut(s)	102, 641
BssAI	RCCGGY	1 cut(s)	266
BssECI	CCNNGG	2 cut(s)	549, 654
BssMI	GATC	3 cut(s)	68, 293, 339
BssSI	CACGAG	1 cut(s)	712
BssT1I	CCWWGG	2 cut(s)	549, 654
Bst2BI	CACGAG	1 cut(s)	712
Bst2UI	CCWGG	3 cut(s)	82, 359, 562
Bst4CI	ACNGT	1 cut(s)	155
BstAUI	TGTACA	2 cut(s)	425, 624
BstC8I	GCNNGC	2 cut(s)	496, 606
BstDEI	CTNAG	2 cut(s)	177, 499
BstF5I	GGATG	2 cut(s)	70, 325
BstKTI	GATC	3 cut(s)	71, 296, 342
BstMAI	GTCTC	2 cut(s)	548, 608
BstMBI	GATC	3 cut(s)	68, 293, 339
BstMWI	GCNNNNNNNGC	1 cut(s)	272
BstNI	CCWGG	3 cut(s)	82, 359, 562
BstSCI	CCNGG	3 cut(s)	80, 357, 560
BstSFI	CTRYAG	2 cut(s)	49, 343
BstV1I	GCAGC	2 cut(s)	360, 394
BstV2I	GAAGAC	1 cut(s)	639
BstX2I	RGATCY	2 cut(s)	293, 339
BstYI	RGATCY	2 cut(s)	293, 339
BsuRI	GGCC	2 cut(s)	587, 707
BtsCI	GGATG	2 cut(s)	70, 325
BveI	ACCTGC	1 cut(s)	245
Cac8I	GCNNGC	2 cut(s)	496, 606
Cfr10I	RCCGGY	1 cut(s)	266
Cfr13I	GGNCC	3 cut(s)	224, 257, 585
Csp6I	GTAC	5 cut(s)	30, 270, 426, 625, 745
CviAII	CATG	3 cut(s)	72, 187, 724
CviQI	GTAC	5 cut(s)	30, 270, 426, 625, 745
DdeI	CTNAG	2 cut(s)	177, 499
DpnI	GATC	3 cut(s)	70, 295, 341
DpnII	GATC	3 cut(s)	68, 293, 339
DriI	GACNNNNNGTC	1 cut(s)	230
EaeI	YGGCCR	1 cut(s)	705
Eam1105I	GACNNNNNGTC	1 cut(s)	230
Eco130I	CCWWGG	2 cut(s)	549, 654
Eco24I	GRGCYC	2 cut(s)	789, 846
Eco31I	GGTCTC	2 cut(s)	548, 608
Eco47I	GGWCC	2 cut(s)	224, 257
EcoO109I	RGGNCCY	2 cut(s)	257, 585
EcoRII	CCWGG	3 cut(s)	80, 357, 560
EcoT14I	CCWWGG	2 cut(s)	549, 654
EcoT38I	GRGCYC	2 cut(s)	789, 846
ErhI	CCWWGG	2 cut(s)	549, 654
FaeI	CATG	3 cut(s)	75, 190, 727
FaqI	GGGAC	1 cut(s)	243
FatI	CATG	3 cut(s)	71, 186, 723
Fnu4HI	GCNGC	2 cut(s)	349, 408
FokI	GGATG	2 cut(s)	77, 332
FriOI	GRGCYC	2 cut(s)	789, 846
Fsp4HI	GCNGC	2 cut(s)	349, 408
FspBI	CTAG	1 cut(s)	251
GluI	GCNGC	2 cut(s)	349, 408
GsaI	CCCAGC	1 cut(s)	843
HaeIII	GGCC	2 cut(s)	587, 707
HapII	CCGG	1 cut(s)	267
Hin1II	CATG	3 cut(s)	75, 190, 727
HindIII	AAGCTT	1 cut(s)	496
HinfI	GANTC	1 cut(s)	77
HpaII	CCGG	1 cut(s)	267
Hpy166II	GTNNAC	2 cut(s)	224, 426
Hpy188I	TCNGA	4 cut(s)	25, 236, 298, 337
Hpy188III	TCNNGA	2 cut(s)	317, 712
Hpy8I	GTNNAC	2 cut(s)	224, 426
HpyAV	CCTTC	2 cut(s)	50, 118
HpyCH4III	ACNGT	1 cut(s)	155
HpyCH4IV	ACGT	1 cut(s)	687
HpyCH4V	TGCA	3 cut(s)	494, 608, 769
HpyF10VI	GCNNNNNNNGC	1 cut(s)	272
HpyF3I	CTNAG	2 cut(s)	177, 499
HpySE526I	ACGT	1 cut(s)	687
Hsp92II	CATG	3 cut(s)	75, 190, 727
KpnI	GGTACC	1 cut(s)	273
Kzo9I	GATC	3 cut(s)	68, 293, 339
LmnI	GCTCC	1 cut(s)	376
Lsp1109I	GCAGC	2 cut(s)	360, 394
MaeI	CTAG	1 cut(s)	251
MaeII	ACGT	1 cut(s)	687
MaeIII	GTNAC	4 cut(s)	149, 155, 182, 719
MalI	GATC	3 cut(s)	70, 295, 341
MboI	GATC	3 cut(s)	68, 293, 339
MboII	GAAGA	5 cut(s)	35, 305, 425, 644, 764
MflI	RGATCY	2 cut(s)	293, 339
MhlI	GDGCHC	2 cut(s)	789, 846
MlsI	TGGCCA	1 cut(s)	707
MluCI	AATT	9 cut(s)	57, 143, 209, 238, 457, 469, 505, 800, 833
MluNI	TGGCCA	1 cut(s)	707
MmeI	TCCRAC	1 cut(s)	148
MnlI	CCTC	6 cut(s)	191, 237, 568, 799, 836, 844
Mox20I	TGGCCA	1 cut(s)	707
MscI	TGGCCA	1 cut(s)	707
MseI	TTAA	4 cut(s)	129, 146, 326, 387
MslI	CAYNNNNRTG	1 cut(s)	686
Msp20I	TGGCCA	1 cut(s)	707
MspI	CCGG	1 cut(s)	267
MspR9I	CCNGG	3 cut(s)	82, 359, 562
MvaI	CCWGG	3 cut(s)	82, 359, 562
MwoI	GCNNNNNNNGC	1 cut(s)	272
NdeII	GATC	3 cut(s)	68, 293, 339
NlaIII	CATG	3 cut(s)	75, 190, 727
NlaIV	GGNNCC	5 cut(s)	259, 271, 295, 372, 586
NmuCI	GTSAC	2 cut(s)	149, 719
PfeI	GAWTC	1 cut(s)	77
PflMI	CCANNNNNTGG	1 cut(s)	290
PfoI	TCCNGGA	2 cut(s)	80, 357
PkrI	GCNGC	2 cut(s)	350, 409
PpuMI	RGGWCCY	1 cut(s)	257
Psp5II	RGGWCCY	1 cut(s)	257
Psp6I	CCWGG	3 cut(s)	80, 357, 560
PspFI	CCCAGC	1 cut(s)	839
PspGI	CCWGG	3 cut(s)	80, 357, 560
PspN4I	GGNNCC	5 cut(s)	259, 271, 295, 372, 586
PspPI	GGNCC	3 cut(s)	224, 257, 585
PspPPI	RGGWCCY	1 cut(s)	257
PsuI	RGATCY	2 cut(s)	293, 339
RsaI	GTAC	5 cut(s)	31, 271, 427, 626, 746
RsaNI	GTAC	5 cut(s)	30, 270, 426, 625, 745
RseI	CAYNNNNRTG	1 cut(s)	686
SaqAI	TTAA	4 cut(s)	129, 146, 326, 387
SatI	GCNGC	2 cut(s)	349, 408
Sau3AI	GATC	3 cut(s)	68, 293, 339
Sau96I	GGNCC	3 cut(s)	224, 257, 585
ScrFI	CCNGG	3 cut(s)	82, 359, 562
SduI	GDGCHC	2 cut(s)	789, 846
SfcI	CTRYAG	2 cut(s)	49, 343
SinI	GGWCC	2 cut(s)	224, 257
SmiMI	CAYNNNNRTG	1 cut(s)	686
Sse9I	AATT	9 cut(s)	57, 143, 209, 238, 457, 469, 505, 800, 833
SsiI	CCGC	1 cut(s)	273
SspMI	CTAG	1 cut(s)	251
StyD4I	CCNGG	3 cut(s)	80, 357, 560
StyI	CCWWGG	2 cut(s)	549, 654
TaaI	ACNGT	1 cut(s)	155
TaiI	ACGT	1 cut(s)	690
TaqII	GACCGA	1 cut(s)	632
TasI	AATT	9 cut(s)	57, 143, 209, 238, 457, 469, 505, 800, 833
TatI	WGTACW	3 cut(s)	29, 425, 624
TfiI	GAWTC	1 cut(s)	77
Tru1I	TTAA	4 cut(s)	129, 146, 326, 387
Tru9I	TTAA	4 cut(s)	129, 146, 326, 387
TseFI	GTSAC	2 cut(s)	149, 719
TseI	GCWGC	2 cut(s)	348, 407
Tsp45I	GTSAC	2 cut(s)	149, 719
TspDTI	ATGAA	5 cut(s)	17, 465, 670, 740, 798
Van91I	CCANNNNNTGG	1 cut(s)	290
VpaK11BI	GGWCC	2 cut(s)	224, 257
XapI	RAATTY	5 cut(s)	209, 238, 469, 505, 833
XspI	CTAG	1 cut(s)	251

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.