Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0013416

Physical Location & Seq

Genomic Coordinates Reverse (-)

9427904 .. 9433536

Gene Structure 5633 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g09920.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

ATGGCTTTTTCACTGTTACCAATCATTTTCATCTTCACTCTCATCCCACTTACCGTCTCTGTTCCTTTCATCGTTTTTCATGGCATTGGAGATAAATGCACCAATCGAGGAGTCACTCACTTTACGGAGCTTTTAAGCAATTGGTCTGGTTCTCAAGGATATTGCATAGAAATTGGTGATGGATCATGGGATTCTTGGACAATGCCTTTGCTGGAACAGACGGCTGTTGCTTGTGAGAAGGTTAAAAATATGAGTGAATTAAGTGATGGTTACAACATAGTTGGACTTTCTCAGGGTAACATGGTTGGTAGAGGAGTAATTGAATTTTGTGACGGTGGACCTCCTGTCCGAAATTTTATATCACTAGCAGGTCCGCATGCTGGTACCGCTTCTATTCCATTTTGTGGGTCTGAGTGGATTTGTGTTCTTCTGGACAACTTAATCAAGTCAGAGATCTACAGCAGCTATATCCAGGAACATTTGGCTCCAAGTGGTTATCTGAAAATCCCCACTGATATTGCTGCTTATCTAAAAGGGTGTACATTTCTTCCAAAGCTGAACAATGAAATCAATAGTACAAGAAATTCTACATATAAGGAACGATTTACAAGCTTAGAGAATTTGGTGCTTATTATGTTTGAGCAAGACACTATACTGATACCCAAGGAGACCTCCTGGTTCGGATATTTCCCAGACGGGGCCTTTGATCCTATATTGCCTGCGCAAGAGACCGAGCTGTACACTGAGGATTGGATTGGTTTGAAAACCTTGGACGAAGCTGGCAAAGTCAAGTTCATAAACGTGTCAGGTAATCATCTGGCCATCACGAAAAGTGACATGAGAAAGTACGTTGTGCCATACTTGGAAGATGGAACATCAATGCAAACGATGATAGCAGAGTCTTCATCACAAAATTTACTTTCATCAGCCTGGAACTTCCTCTTGGAGTTTGCTGGGCTCAAGGAAGATCGACCATTGGTGCTGACCGTGGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000323 GO:0002084 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0006464 GO:0006807 GO:0006810 GO:0006897 GO:0006898 GO:0006996 GO:0007005 GO:0007275 GO:0007610 GO:0008150 GO:0008152 GO:0008474 GO:0009056 GO:0009057 GO:0009791 GO:0009987 GO:0016043 GO:0016192 GO:0016787 GO:0016788 GO:0016790 GO:0018991 GO:0019098 GO:0019538 GO:0022414 GO:0030163 GO:0032501 GO:0032502 GO:0032504 GO:0035601 GO:0036211 GO:0042157 GO:0042159 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048609 GO:0048856 GO:0051179 GO:0051234 GO:0071704 GO:0071840 GO:0098599 GO:0098657 GO:0098732 GO:0098734 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00062 ko01100 ko01212 ko04142 map00062 map01100 map01212 map04142

Pfam Domains

Protein Families

Palm_thioest

Protein Analysis

332

Amino Acids

36.69

Weight (kDa)

4.73

Isoelectric Point (pI)

34.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Palm_thioest	PF02089	22 - 272	3e-77	Palmitoyl protein thioesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013416)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60340 AT3G60340
fragaria_vesca	FvH4_7g09920
malus_domestica	MD07G1104400.v1.1
prunus_persica	Prupe.2G128000_v2.0.a1 Prupe.2G128000_v2.0.a1
pyrus_communis	pycom07g08940
rosa_chinensis	RchiOBHm_Chr1g0347441
rosa_laevigata	RLG00000028747
rosa_multiflora	Rmu_sc0009756.1_g000009
rosa_roxburghii	Rroxscaffold_4G00307770
rosa_rugosa	Rorug01G0186900 Rorug01G0187000
rosa_samantha	Rh1AG204400 Rh1BG170100 Rh1CG189500 Rh1DG200500
rosa_wichuraiana	Rw1G017150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	723
Acc36I	ACCTGC	1 cut(s)	359
Acc65I	GGTACC	1 cut(s)	383
AccB1I	GGYRCC	1 cut(s)	383
AccB7I	CCANNNNNTGG	1 cut(s)	404
AciI	CCGC	2 cut(s)	374, 387
AclWI	GGATC	2 cut(s)	190, 701
AcoI	YGGCCR	1 cut(s)	819
AcsI	RAATTY	5 cut(s)	323, 352, 583, 619, 913
AfaI	GTAC	5 cut(s)	385, 541, 577, 740, 848
AfiI	CCNNNNNNNGG	3 cut(s)	380, 404, 697
AflIII	ACRYGT	1 cut(s)	801
AgsI	TTSAA	2 cut(s)	323, 763
AhdI	GACNNNNNGTC	1 cut(s)	344
AjnI	CCWGG	3 cut(s)	471, 674, 929
AjuI	GAANNNNNNNTTGG	2 cut(s)	926, 958
AluBI	AGCT	6 cut(s)	130, 465, 556, 612, 736, 779
AluI	AGCT	6 cut(s)	130, 465, 556, 612, 736, 779
Alw26I	GTCTC	3 cut(s)	61, 662, 722
AlwI	GGATC	2 cut(s)	190, 701
AoxI	GGCC	2 cut(s)	699, 819
ApeKI	GCWGC	2 cut(s)	462, 521
ApoI	RAATTY	5 cut(s)	323, 352, 583, 619, 913
ArsI	GACNNNNNNTTYG	4 cut(s)	190, 222, 686, 718
Asp718I	GGTACC	1 cut(s)	383
AspLEI	GCGC	1 cut(s)	724
AspS9I	GGNCC	3 cut(s)	338, 371, 699
AsuHPI	GGTGA	1 cut(s)	188
AvaII	GGWCC	2 cut(s)	338, 371
BalI	TGGCCA	1 cut(s)	821
BanI	GGYRCC	1 cut(s)	383
BanII	GRGCYC	1 cut(s)	960
BbsI	GAAGAC	1 cut(s)	894
BbvI	GCAGC	2 cut(s)	474, 508
BccI	CCATC	4 cut(s)	173, 260, 830, 863
BceAI	ACGGC	1 cut(s)	237
BciT130I	CCWGG	3 cut(s)	473, 676, 931
BcoDI	GTCTC	3 cut(s)	61, 662, 722
BfaI	CTAG	1 cut(s)	365
BfmI	CTRYAG	1 cut(s)	457
BfuAI	ACCTGC	1 cut(s)	359
BglII	AGATCT	1 cut(s)	453
BisI	GCNGC	2 cut(s)	463, 522
BlsI	GCNGC	2 cut(s)	464, 523
Bme1390I	CCNGG	3 cut(s)	473, 676, 931
Bme18I	GGWCC	2 cut(s)	338, 371
BmeRI	GACNNNNNGTC	1 cut(s)	344
BmgT120I	GGNCC	3 cut(s)	338, 371, 699
BmiI	GGNNCC	3 cut(s)	385, 486, 700
BmrFI	CCNGG	3 cut(s)	473, 676, 931
BpiI	GAAGAC	1 cut(s)	894
BpuEI	CTTGAG	2 cut(s)	138, 944
BsaI	GGTCTC	2 cut(s)	662, 722
BsaJI	CCNNGG	3 cut(s)	663, 768, 987
Bsc4I	CCNNNNNNNGG	3 cut(s)	380, 404, 697
BseBI	CCWGG	3 cut(s)	473, 676, 931
BseDI	CCNNGG	3 cut(s)	663, 768, 987
BseGI	GGATG	1 cut(s)	42
BseLI	CCNNNNNNNGG	3 cut(s)	380, 404, 697
BseMII	CTCAG	3 cut(s)	305, 402, 735
BseRI	GAGGAG	2 cut(s)	123, 327
BseXI	GCAGC	2 cut(s)	474, 508
BseYI	CCCAGC	1 cut(s)	953
BshFI	GGCC	2 cut(s)	701, 821
BshNI	GGYRCC	1 cut(s)	383
BslI	CCNNNNNNNGG	3 cut(s)	380, 404, 697
BsmAI	GTCTC	3 cut(s)	61, 662, 722
BsmBI	CGTCTC	1 cut(s)	61
BsnI	GGCC	2 cut(s)	701, 821
Bso31I	GGTCTC	2 cut(s)	662, 722
Bsp1286I	GDGCHC	1 cut(s)	960
Bsp1407I	TGTACA	2 cut(s)	539, 738
Bsp143I	GATC	4 cut(s)	182, 453, 706, 967
BspACI	CCGC	2 cut(s)	374, 387
BspANI	GGCC	2 cut(s)	701, 821
BspCNI	CTCAG	3 cut(s)	304, 403, 736
BspLI	GGNNCC	3 cut(s)	385, 486, 700
BspMI	ACCTGC	1 cut(s)	359
BspPI	GGATC	2 cut(s)	190, 701
BspT107I	GGYRCC	1 cut(s)	383
BspTNI	GGTCTC	2 cut(s)	662, 722
BsrGI	TGTACA	2 cut(s)	539, 738
BssECI	CCNNGG	3 cut(s)	663, 768, 987
BssMI	GATC	4 cut(s)	182, 453, 706, 967
BssT1I	CCWWGG	2 cut(s)	663, 768
Bst2UI	CCWGG	3 cut(s)	473, 676, 931
Bst4CI	ACNGT	4 cut(s)	15, 55, 335, 988
BstAUI	TGTACA	2 cut(s)	539, 738
BstC8I	GCNNGC	3 cut(s)	378, 720, 781
BstDEI	CTNAG	4 cut(s)	291, 411, 613, 744
BstDSI	CCRYGG	1 cut(s)	987
BstF5I	GGATG	1 cut(s)	42
BstHHI	GCGC	1 cut(s)	724
BstKTI	GATC	4 cut(s)	185, 456, 709, 970
BstMAI	GTCTC	3 cut(s)	61, 662, 722
BstMBI	GATC	4 cut(s)	182, 453, 706, 967
BstMWI	GCNNNNNNNGC	1 cut(s)	386
BstNI	CCWGG	3 cut(s)	473, 676, 931
BstNSI	RCATGY	1 cut(s)	380
BstSCI	CCNGG	3 cut(s)	471, 674, 929
BstSFI	CTRYAG	1 cut(s)	457
BstV1I	GCAGC	2 cut(s)	474, 508
BstV2I	GAAGAC	1 cut(s)	894
BstX2I	RGATCY	1 cut(s)	453
BstYI	RGATCY	1 cut(s)	453
BsuRI	GGCC	2 cut(s)	701, 821
BtgI	CCRYGG	1 cut(s)	987
BtsCI	GGATG	1 cut(s)	42
BtsIMutI	CAGTG	3 cut(s)	11, 510, 741
BveI	ACCTGC	1 cut(s)	359
Cac8I	GCNNGC	3 cut(s)	378, 720, 781
CfoI	GCGC	1 cut(s)	724
Cfr13I	GGNCC	3 cut(s)	338, 371, 699
Csp6I	GTAC	5 cut(s)	384, 540, 576, 739, 847
CspCI	CAANNNNNGTGG	2 cut(s)	499, 534
CviAII	CATG	5 cut(s)	80, 186, 301, 377, 838
CviQI	GTAC	5 cut(s)	384, 540, 576, 739, 847
DdeI	CTNAG	4 cut(s)	291, 411, 613, 744
DpnI	GATC	4 cut(s)	184, 455, 708, 969
DpnII	GATC	4 cut(s)	182, 453, 706, 967
DriI	GACNNNNNGTC	1 cut(s)	344
EaeI	YGGCCR	1 cut(s)	819
Eam1105I	GACNNNNNGTC	1 cut(s)	344
Eco130I	CCWWGG	2 cut(s)	663, 768
Eco24I	GRGCYC	1 cut(s)	960
Eco31I	GGTCTC	2 cut(s)	662, 722
Eco47I	GGWCC	2 cut(s)	338, 371
EcoO109I	RGGNCCY	1 cut(s)	699
EcoRII	CCWGG	3 cut(s)	471, 674, 929
EcoT14I	CCWWGG	2 cut(s)	663, 768
EcoT38I	GRGCYC	1 cut(s)	960
ErhI	CCWWGG	2 cut(s)	663, 768
Esp3I	CGTCTC	1 cut(s)	61
FaeI	CATG	5 cut(s)	83, 189, 304, 380, 841
FatI	CATG	5 cut(s)	79, 185, 300, 376, 837
Fnu4HI	GCNGC	2 cut(s)	463, 522
FokI	GGATG	1 cut(s)	29
FriOI	GRGCYC	1 cut(s)	960
Fsp4HI	GCNGC	2 cut(s)	463, 522
FspBI	CTAG	1 cut(s)	365
FspI	TGCGCA	1 cut(s)	723
GlaI	GCGC	1 cut(s)	723
GluI	GCNGC	2 cut(s)	463, 522
GsaI	CCCAGC	1 cut(s)	957
HaeIII	GGCC	2 cut(s)	701, 821
HhaI	GCGC	1 cut(s)	724
Hin1II	CATG	5 cut(s)	83, 189, 304, 380, 841
Hin6I	GCGC	1 cut(s)	722
HinP1I	GCGC	1 cut(s)	722
HindIII	AAGCTT	1 cut(s)	610
HinfI	GANTC	3 cut(s)	111, 191, 899
HphI	GGTGA	1 cut(s)	188
Hpy166II	GTNNAC	3 cut(s)	338, 540, 741
Hpy188I	TCNGA	5 cut(s)	350, 412, 451, 501, 683
Hpy188III	TCNNGA	2 cut(s)	431, 826
Hpy8I	GTNNAC	3 cut(s)	338, 540, 741
HpyAV	CCTTC	1 cut(s)	232
HpyCH4III	ACNGT	4 cut(s)	15, 55, 335, 988
HpyCH4IV	ACGT	2 cut(s)	801, 849
HpyCH4V	TGCA	3 cut(s)	99, 165, 883
HpyF10VI	GCNNNNNNNGC	1 cut(s)	386
HpyF3I	CTNAG	4 cut(s)	291, 411, 613, 744
HpySE526I	ACGT	2 cut(s)	801, 849
Hsp92II	CATG	5 cut(s)	83, 189, 304, 380, 841
HspAI	GCGC	1 cut(s)	722
KpnI	GGTACC	1 cut(s)	387
Kzo9I	GATC	4 cut(s)	182, 453, 706, 967
LmnI	GCTCC	2 cut(s)	127, 490
Lsp1109I	GCAGC	2 cut(s)	474, 508
MaeI	CTAG	1 cut(s)	365
MaeII	ACGT	2 cut(s)	801, 849
MaeIII	GTNAC	6 cut(s)	15, 112, 269, 296, 329, 833
MalI	GATC	4 cut(s)	184, 455, 708, 969
MboI	GATC	4 cut(s)	182, 453, 706, 967
MboII	GAAGA	6 cut(s)	25, 419, 539, 878, 894, 977
MfeI	CAATTG	1 cut(s)	139
MflI	RGATCY	1 cut(s)	453
MhlI	GDGCHC	1 cut(s)	960
MlsI	TGGCCA	1 cut(s)	821
MluCI	AATT	9 cut(s)	139, 171, 257, 318, 323, 352, 583, 619, 913
MluNI	TGGCCA	1 cut(s)	821
MlyI	GAGTC	2 cut(s)	120, 908
MmeI	TCCRAC	1 cut(s)	262
MnlI	CCTC	6 cut(s)	101, 305, 351, 682, 739, 950
Mox20I	TGGCCA	1 cut(s)	821
MscI	TGGCCA	1 cut(s)	821
MseI	TTAA	4 cut(s)	134, 243, 260, 440
MslI	CAYNNNNRTG	1 cut(s)	800
Msp20I	TGGCCA	1 cut(s)	821
MspR9I	CCNGG	3 cut(s)	473, 676, 931
MunI	CAATTG	1 cut(s)	139
MvaI	CCWGG	3 cut(s)	473, 676, 931
MwoI	GCNNNNNNNGC	1 cut(s)	386
NdeII	GATC	4 cut(s)	182, 453, 706, 967
NlaIII	CATG	5 cut(s)	83, 189, 304, 380, 841
NlaIV	GGNNCC	3 cut(s)	385, 486, 700
NmuCI	GTSAC	3 cut(s)	112, 329, 833
NsbI	TGCGCA	1 cut(s)	723
NspI	RCATGY	1 cut(s)	380
PaeI	GCATGC	1 cut(s)	380
PfeI	GAWTC	1 cut(s)	191
PflMI	CCANNNNNTGG	1 cut(s)	404
PfoI	TCCNGGA	1 cut(s)	471
PkrI	GCNGC	2 cut(s)	464, 523
PleI	GAGTC	2 cut(s)	119, 907
PpsI	GAGTC	2 cut(s)	119, 907
Psp6I	CCWGG	3 cut(s)	471, 674, 929
PspFI	CCCAGC	1 cut(s)	953
PspGI	CCWGG	3 cut(s)	471, 674, 929
PspN4I	GGNNCC	3 cut(s)	385, 486, 700
PspPI	GGNCC	3 cut(s)	338, 371, 699
PsuI	RGATCY	1 cut(s)	453
RsaI	GTAC	5 cut(s)	385, 541, 577, 740, 848
RsaNI	GTAC	5 cut(s)	384, 540, 576, 739, 847
RseI	CAYNNNNRTG	1 cut(s)	800
SaqAI	TTAA	4 cut(s)	134, 243, 260, 440
SatI	GCNGC	2 cut(s)	463, 522
Sau3AI	GATC	4 cut(s)	182, 453, 706, 967
Sau96I	GGNCC	3 cut(s)	338, 371, 699
SchI	GAGTC	2 cut(s)	120, 908
ScrFI	CCNGG	3 cut(s)	473, 676, 931
SduI	GDGCHC	1 cut(s)	960
SfcI	CTRYAG	1 cut(s)	457
SinI	GGWCC	2 cut(s)	338, 371
SmiMI	CAYNNNNRTG	1 cut(s)	800
SmlI	CTYRAG	2 cut(s)	153, 959
SmoI	CTYRAG	2 cut(s)	153, 959
SphI	GCATGC	1 cut(s)	380
Sse9I	AATT	9 cut(s)	139, 171, 257, 318, 323, 352, 583, 619, 913
SsiI	CCGC	2 cut(s)	374, 387
SspMI	CTAG	1 cut(s)	365
StyD4I	CCNGG	3 cut(s)	471, 674, 929
StyI	CCWWGG	2 cut(s)	663, 768
TaaI	ACNGT	4 cut(s)	15, 55, 335, 988
TaiI	ACGT	2 cut(s)	804, 852
TaqI	TCGA	2 cut(s)	106, 970
TaqII	GACCGA	1 cut(s)	746
TasI	AATT	9 cut(s)	139, 171, 257, 318, 323, 352, 583, 619, 913
TatI	WGTACW	3 cut(s)	539, 575, 738
TfiI	GAWTC	1 cut(s)	191
Tru1I	TTAA	4 cut(s)	134, 243, 260, 440
Tru9I	TTAA	4 cut(s)	134, 243, 260, 440
TscAI	CASTG	3 cut(s)	18, 517, 748
TseFI	GTSAC	3 cut(s)	112, 329, 833
TseI	GCWGC	2 cut(s)	462, 521
Tsp45I	GTSAC	3 cut(s)	112, 329, 833
TspDTI	ATGAA	7 cut(s)	19, 58, 68, 579, 784, 894, 912
TspGWI	ACGGA	1 cut(s)	140
TspRI	CASTG	3 cut(s)	18, 517, 748
Van91I	CCANNNNNTGG	1 cut(s)	404
VpaK11BI	GGWCC	2 cut(s)	338, 371
XapI	RAATTY	5 cut(s)	323, 352, 583, 619, 913
XceI	RCATGY	1 cut(s)	380
XspI	CTAG	1 cut(s)	365

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.