Rh1DG200500

Palmitoyl-protein thioesterase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0013416
Physical Location & Seq
Reverse (-)
39316403 .. 39323096
6694 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG200500.1

Sequence Viewer

Length: 984 bp
ATGGCTTTTCCACTGTCACCGATCATTTTCATCTTCTTCTTCACCATCACTCTCATCCCACTTACATTCTCTGTTCCTTTCATTGTTTTTCATGGCATTGGAGATAAATGCAGCAATAAAGGAGTCACACACTTTACGGAGCTCTTAAGCAAATGGTCTGGTTCTCAAGGATATTGCGTAGAAATTGGGGATGGATCATGGGATTCCTGGACAATGCCTTTACTGGAACAGACGGCTATTGCTTGTGAGAAGGTTAAAAATATGAGTGAATTAAGTGACGGTTACAACATAGTTGGACTTTCTCAGGGTAACATGGTTGGTAGAGGAGTAGTTGAATTTTGTGATGGTGGACCTCCTGTCAGAAATTTTGTATCACTAGCAGGTCCCCACGCCGGTACCGCTTCTATTCCATTTTGTGGATCCGAGTGGCTTTGTGTTCTTTTGGACGACTTAATCAAGTCAGAGATCTACAGCAGCTTTATCCAGGAACATTTGGCTCCAAGTGGTTATGTTAAAATCCCTACTGATATTGCTGCCTATCTAAAAGGGTGTACATTTCTTCCAAAGCTGAACAATGAAATCAATTTTACGAGAAATTCCACATATAAGGAACGATTTGCAAGCTTAGAGAATTTGGTGCTTATTATGTTTGAGCAAGACACCATATTGATACCCAAGGAGACCTCCTGGTTTGGATATTTCCCAGATGGGGCCTATGATCCTATATTGCCTGCACAAGAGACCGAGCTGTACATTGAAGACTGGATTGGTTTGAAAACCTTGGACGAAGCTGGTAAGGTCAAGTTCATAAACGTGTCAGGTAATCATCTGGCCATCACGAGAAGTGACATGAAAAAATATGTTGTGCCGTACTTGGAAGATGGAACATCAATGCAAATGATGATAGCAGAGCCCTCATCACAAAAATTACTTTCATCAGCTTGGAACTTCCTCTTGGAATTTGCTGGGCTCAAAGAGGATTGA

Protein Analysis

327

Amino Acids

36.38

Weight (kDa)

4.76

Isoelectric Point (pI)

36.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Palm_thioest PF02089 26 - 276 8.3e-77 Palmitoyl protein thioesterase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013416)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G60340 AT3G60340
fragaria_vesca FvH4_7g09920
malus_domestica MD07G1104400.v1.1
prunus_persica Prupe.2G128000_v2.0.a1 Prupe.2G128000_v2.0.a1
pyrus_communis pycom07g08940
rosa_chinensis RchiOBHm_Chr1g0347441
rosa_laevigata RLG00000028747
rosa_multiflora Rmu_sc0009756.1_g000009
rosa_roxburghii Rroxscaffold_4G00307770
rosa_rugosa Rorug01G0186900 Rorug01G0187000
rosa_samantha Rh1AG204400 Rh1BG170100 Rh1CG189500 Rh1DG200500
rosa_wichuraiana Rw1G017150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 371
Acc65I GGTACC 1 cut(s) 395
AccB1I GGYRCC 1 cut(s) 395
AccB7I CCANNNNNTGG 1 cut(s) 416
AciI CCGC 1 cut(s) 399
AclWI GGATC 4 cut(s) 202, 414, 427, 713
AcoI YGGCCR 1 cut(s) 831
AcsI RAATTY 5 cut(s) 335, 364, 595, 631, 959
AfaI GTAC 4 cut(s) 397, 553, 752, 872
AfiI CCNNNNNNNGG 3 cut(s) 392, 416, 709
AflII CTTAAG 1 cut(s) 145
AflIII ACRYGT 1 cut(s) 813
AgsI TTSAA 3 cut(s) 335, 758, 775
AhdI GACNNNNNGTC 1 cut(s) 356
AjnI CCWGG 3 cut(s) 206, 483, 686
AjuI GAANNNNNNNTTGG 4 cut(s) 750, 782, 938, 970
AluBI AGCT 7 cut(s) 142, 477, 568, 624, 748, 791, 941
AluI AGCT 7 cut(s) 142, 477, 568, 624, 748, 791, 941
Alw21I GWGCWC 1 cut(s) 144
Alw26I GTCTC 2 cut(s) 674, 734
AlwI GGATC 4 cut(s) 202, 414, 427, 713
AoxI GGCC 2 cut(s) 711, 831
ApeKI GCWGC 3 cut(s) 111, 474, 533
ApoI RAATTY 5 cut(s) 335, 364, 595, 631, 959
Asp718I GGTACC 1 cut(s) 395
AspS9I GGNCC 3 cut(s) 350, 383, 711
AsuHPI GGTGA 2 cut(s) 9, 34
AvaII GGWCC 2 cut(s) 350, 383
BaeI ACNNNNGTAYC 2 cut(s) 379, 412
BalI TGGCCA 1 cut(s) 833
BamHI GGATCC 1 cut(s) 419
BanI GGYRCC 1 cut(s) 395
BanII GRGCYC 3 cut(s) 144, 915, 972
BauI CACGAG 1 cut(s) 838
BbsI GAAGAC 1 cut(s) 765
Bbv12I GWGCWC 1 cut(s) 144
BbvI GCAGC 3 cut(s) 123, 486, 520
BccI CCATC 6 cut(s) 53, 185, 338, 701, 842, 875
BceAI ACGGC 2 cut(s) 249, 853
BciT130I CCWGG 3 cut(s) 208, 485, 688
BcoDI GTCTC 2 cut(s) 674, 734
BfaI CTAG 1 cut(s) 377
BfmI CTRYAG 1 cut(s) 469
BfrI CTTAAG 1 cut(s) 145
BfuAI ACCTGC 1 cut(s) 371
BglII AGATCT 1 cut(s) 465
BisI GCNGC 3 cut(s) 112, 475, 534
BlsI GCNGC 3 cut(s) 113, 476, 535
Bme1390I CCNGG 3 cut(s) 208, 485, 688
Bme18I GGWCC 2 cut(s) 350, 383
BmeRI GACNNNNNGTC 1 cut(s) 356
BmgT120I GGNCC 3 cut(s) 350, 383, 711
BmiI GGNNCC 5 cut(s) 385, 397, 421, 498, 712
BmrFI CCNGG 3 cut(s) 208, 485, 688
BpiI GAAGAC 1 cut(s) 765
BpuEI CTTGAG 1 cut(s) 150
BsaI GGTCTC 2 cut(s) 674, 734
BsaJI CCNNGG 2 cut(s) 675, 780
Bsc4I CCNNNNNNNGG 3 cut(s) 392, 416, 709
Bse118I RCCGGY 1 cut(s) 392
Bse1I ACTGG 2 cut(s) 228, 767
BseBI CCWGG 3 cut(s) 208, 485, 688
BseDI CCNNGG 2 cut(s) 675, 780
BseGI GGATG 2 cut(s) 54, 196
BseLI CCNNNNNNNGG 3 cut(s) 392, 416, 709
BseMII CTCAG 1 cut(s) 317
BseNI ACTGG 2 cut(s) 228, 767
BseRI GAGGAG 1 cut(s) 339
BseXI GCAGC 3 cut(s) 123, 486, 520
BseYI CCCAGC 1 cut(s) 965
BsgI GTGCAG 1 cut(s) 717
BshFI GGCC 2 cut(s) 713, 833
BshNI GGYRCC 1 cut(s) 395
BsiHKAI GWGCWC 1 cut(s) 144
BsiSI CCGG 1 cut(s) 393
BslFI GGGAC 1 cut(s) 369
BslI CCNNNNNNNGG 3 cut(s) 392, 416, 709
BsmAI GTCTC 2 cut(s) 674, 734
BsmFI GGGAC 1 cut(s) 369
BsnI GGCC 2 cut(s) 713, 833
Bso31I GGTCTC 2 cut(s) 674, 734
Bsp1286I GDGCHC 3 cut(s) 144, 915, 972
Bsp1407I TGTACA 2 cut(s) 551, 750
Bsp143I GATC 5 cut(s) 21, 194, 419, 465, 718
BspACI CCGC 1 cut(s) 399
BspANI GGCC 2 cut(s) 713, 833
BspCNI CTCAG 1 cut(s) 316
BspLI GGNNCC 5 cut(s) 385, 397, 421, 498, 712
BspMI ACCTGC 1 cut(s) 371
BspPI GGATC 4 cut(s) 202, 414, 427, 713
BspT107I GGYRCC 1 cut(s) 395
BspTI CTTAAG 1 cut(s) 145
BspTNI GGTCTC 2 cut(s) 674, 734
BsrFI RCCGGY 1 cut(s) 392
BsrGI TGTACA 2 cut(s) 551, 750
BsrI ACTGG 2 cut(s) 228, 767
BssAI RCCGGY 1 cut(s) 392
BssECI CCNNGG 2 cut(s) 675, 780
BssMI GATC 5 cut(s) 21, 194, 419, 465, 718
BssSI CACGAG 1 cut(s) 838
BssT1I CCWWGG 2 cut(s) 675, 780
Bst2BI CACGAG 1 cut(s) 838
Bst2UI CCWGG 3 cut(s) 208, 485, 688
Bst4CI ACNGT 2 cut(s) 15, 281
BstAFI CTTAAG 1 cut(s) 145
BstAUI TGTACA 2 cut(s) 551, 750
BstC8I GCNNGC 2 cut(s) 622, 732
BstDEI CTNAG 2 cut(s) 303, 625
BstF5I GGATG 2 cut(s) 54, 196
BstKTI GATC 5 cut(s) 24, 197, 422, 468, 721
BstMAI GTCTC 2 cut(s) 674, 734
BstMBI GATC 5 cut(s) 21, 194, 419, 465, 718
BstMWI GCNNNNNNNGC 1 cut(s) 398
BstNI CCWGG 3 cut(s) 208, 485, 688
BstSCI CCNGG 3 cut(s) 206, 483, 686
BstSFI CTRYAG 1 cut(s) 469
BstV1I GCAGC 3 cut(s) 123, 486, 520
BstV2I GAAGAC 1 cut(s) 765
BstX2I RGATCY 2 cut(s) 419, 465
BstYI RGATCY 2 cut(s) 419, 465
BsuRI GGCC 2 cut(s) 713, 833
BtsCI GGATG 2 cut(s) 54, 196
BtsIMutI CAGTG 1 cut(s) 11
BveI ACCTGC 1 cut(s) 371
Cac8I GCNNGC 2 cut(s) 622, 732
Cfr10I RCCGGY 1 cut(s) 392
Cfr13I GGNCC 3 cut(s) 350, 383, 711
Csp6I GTAC 4 cut(s) 396, 552, 751, 871
CviAII CATG 4 cut(s) 92, 198, 313, 850
CviQI GTAC 4 cut(s) 396, 552, 751, 871
DdeI CTNAG 2 cut(s) 303, 625
DpnI GATC 5 cut(s) 23, 196, 421, 467, 720
DpnII GATC 5 cut(s) 21, 194, 419, 465, 718
DriI GACNNNNNGTC 1 cut(s) 356
EaeI YGGCCR 1 cut(s) 831
Eam1105I GACNNNNNGTC 1 cut(s) 356
Ecl136II GAGCTC 1 cut(s) 142
Eco130I CCWWGG 2 cut(s) 675, 780
Eco24I GRGCYC 3 cut(s) 144, 915, 972
Eco31I GGTCTC 2 cut(s) 674, 734
Eco47I GGWCC 2 cut(s) 350, 383
Eco53kI GAGCTC 1 cut(s) 142
EcoICRI GAGCTC 1 cut(s) 142
EcoO109I RGGNCCY 2 cut(s) 383, 711
EcoRII CCWGG 3 cut(s) 206, 483, 686
EcoT14I CCWWGG 2 cut(s) 675, 780
EcoT38I GRGCYC 3 cut(s) 144, 915, 972
ErhI CCWWGG 2 cut(s) 675, 780
FaeI CATG 4 cut(s) 95, 201, 316, 853
FaqI GGGAC 1 cut(s) 369
FatI CATG 4 cut(s) 91, 197, 312, 849
Fnu4HI GCNGC 3 cut(s) 112, 475, 534
FokI GGATG 2 cut(s) 41, 203
FriOI GRGCYC 3 cut(s) 144, 915, 972
Fsp4HI GCNGC 3 cut(s) 112, 475, 534
FspBI CTAG 1 cut(s) 377
GluI GCNGC 3 cut(s) 112, 475, 534
GsaI CCCAGC 1 cut(s) 969
HaeIII GGCC 2 cut(s) 713, 833
HapII CCGG 1 cut(s) 393
Hin1II CATG 4 cut(s) 95, 201, 316, 853
HindIII AAGCTT 1 cut(s) 622
HinfI GANTC 2 cut(s) 123, 203
HpaII CCGG 1 cut(s) 393
HphI GGTGA 2 cut(s) 9, 34
Hpy166II GTNNAC 2 cut(s) 350, 552
Hpy188I TCNGA 3 cut(s) 362, 424, 463
Hpy188III TCNNGA 1 cut(s) 838
Hpy8I GTNNAC 2 cut(s) 350, 552
HpyAV CCTTC 1 cut(s) 244
HpyCH4III ACNGT 2 cut(s) 15, 281
HpyCH4IV ACGT 1 cut(s) 813
HpyCH4V TGCA 4 cut(s) 111, 620, 734, 895
HpyF10VI GCNNNNNNNGC 1 cut(s) 398
HpyF3I CTNAG 2 cut(s) 303, 625
HpySE526I ACGT 1 cut(s) 813
Hsp92II CATG 4 cut(s) 95, 201, 316, 853
KpnI GGTACC 1 cut(s) 399
Kzo9I GATC 5 cut(s) 21, 194, 419, 465, 718
LmnI GCTCC 2 cut(s) 139, 502
Lsp1109I GCAGC 3 cut(s) 123, 486, 520
MaeI CTAG 1 cut(s) 377
MaeII ACGT 1 cut(s) 813
MaeIII GTNAC 6 cut(s) 15, 124, 275, 281, 308, 845
MalI GATC 5 cut(s) 23, 196, 421, 467, 720
MboI GATC 5 cut(s) 21, 194, 419, 465, 718
MboII GAAGA 6 cut(s) 25, 28, 31, 551, 770, 890
MflI RGATCY 2 cut(s) 419, 465
MhlI GDGCHC 3 cut(s) 144, 915, 972
MlsI TGGCCA 1 cut(s) 833
MluCI AATT 9 cut(s) 183, 269, 335, 364, 583, 595, 631, 926, 959
MluNI TGGCCA 1 cut(s) 833
MlyI GAGTC 1 cut(s) 132
MmeI TCCRAC 1 cut(s) 274
MnlI CCTC 6 cut(s) 317, 363, 694, 925, 962, 970
Mox20I TGGCCA 1 cut(s) 833
MscI TGGCCA 1 cut(s) 833
MseI TTAA 5 cut(s) 146, 255, 272, 452, 513
MslI CAYNNNNRTG 1 cut(s) 812
Msp20I TGGCCA 1 cut(s) 833
MspCI CTTAAG 1 cut(s) 145
MspI CCGG 1 cut(s) 393
MspR9I CCNGG 3 cut(s) 208, 485, 688
MvaI CCWGG 3 cut(s) 208, 485, 688
MwoI GCNNNNNNNGC 1 cut(s) 398
NdeII GATC 5 cut(s) 21, 194, 419, 465, 718
NlaIII CATG 4 cut(s) 95, 201, 316, 853
NlaIV GGNNCC 5 cut(s) 385, 397, 421, 498, 712
NmuCI GTSAC 4 cut(s) 15, 124, 275, 845
PfeI GAWTC 1 cut(s) 203
PflMI CCANNNNNTGG 1 cut(s) 416
PfoI TCCNGGA 2 cut(s) 206, 483
PkrI GCNGC 3 cut(s) 113, 476, 535
PleI GAGTC 1 cut(s) 131
PpsI GAGTC 1 cut(s) 131
PpuMI RGGWCCY 1 cut(s) 383
Psp124BI GAGCTC 1 cut(s) 144
Psp5II RGGWCCY 1 cut(s) 383
Psp6I CCWGG 3 cut(s) 206, 483, 686
PspFI CCCAGC 1 cut(s) 965
PspGI CCWGG 3 cut(s) 206, 483, 686
PspN4I GGNNCC 5 cut(s) 385, 397, 421, 498, 712
PspPI GGNCC 3 cut(s) 350, 383, 711
PspPPI RGGWCCY 1 cut(s) 383
PsuI RGATCY 2 cut(s) 419, 465
RsaI GTAC 4 cut(s) 397, 553, 752, 872
RsaNI GTAC 4 cut(s) 396, 552, 751, 871
RseI CAYNNNNRTG 1 cut(s) 812
SacI GAGCTC 1 cut(s) 144
SaqAI TTAA 5 cut(s) 146, 255, 272, 452, 513
SatI GCNGC 3 cut(s) 112, 475, 534
Sau3AI GATC 5 cut(s) 21, 194, 419, 465, 718
Sau96I GGNCC 3 cut(s) 350, 383, 711
SchI GAGTC 1 cut(s) 132
ScrFI CCNGG 3 cut(s) 208, 485, 688
SduI GDGCHC 3 cut(s) 144, 915, 972
SfcI CTRYAG 1 cut(s) 469
SinI GGWCC 2 cut(s) 350, 383
SmiMI CAYNNNNRTG 1 cut(s) 812
SmlI CTYRAG 2 cut(s) 145, 165
SmoI CTYRAG 2 cut(s) 145, 165
Sse9I AATT 9 cut(s) 183, 269, 335, 364, 583, 595, 631, 926, 959
SsiI CCGC 1 cut(s) 399
SspMI CTAG 1 cut(s) 377
SstI GAGCTC 1 cut(s) 144
StyD4I CCNGG 3 cut(s) 206, 483, 686
StyI CCWWGG 2 cut(s) 675, 780
TaaI ACNGT 2 cut(s) 15, 281
TaiI ACGT 1 cut(s) 816
TaqII GACCGA 1 cut(s) 758
TasI AATT 9 cut(s) 183, 269, 335, 364, 583, 595, 631, 926, 959
TatI WGTACW 2 cut(s) 551, 750
TfiI GAWTC 1 cut(s) 203
Tru1I TTAA 5 cut(s) 146, 255, 272, 452, 513
Tru9I TTAA 5 cut(s) 146, 255, 272, 452, 513
TscAI CASTG 1 cut(s) 18
TseFI GTSAC 4 cut(s) 15, 124, 275, 845
TseI GCWGC 3 cut(s) 111, 474, 533
Tsp45I GTSAC 4 cut(s) 15, 124, 275, 845
TspDTI ATGAA 7 cut(s) 19, 70, 80, 591, 796, 866, 924
TspGWI ACGGA 1 cut(s) 152
TspRI CASTG 1 cut(s) 18
Van91I CCANNNNNTGG 1 cut(s) 416
Vha464I CTTAAG 1 cut(s) 145
VpaK11BI GGWCC 2 cut(s) 350, 383
XapI RAATTY 5 cut(s) 335, 364, 595, 631, 959
XspI CTAG 1 cut(s) 377
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.