Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0013416

Physical Location & Seq

Genomic Coordinates Reverse (-)

8135107 .. 8139916

Gene Structure 4810 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g08940.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGGCTTCTCCACCAGTACCAGTCATTTTCTTCTTCTTCTTCTTCACCATCACTCTCATCCCACTAACCCACTCTGTTCCTTTCGTTGTTTTTCATGGAATCAGTGATAAATGCAGCAACCGAGGAGTCACACAGTTCACTGAGCTCTTAAGCAACTGGTCAGGTTCCCAAGGATACTGCATAGAAATTGGGGATGGATCGTGGGATTCCTGGACAATGCCCTTATCGGAACAGACGGCCATTGCTTGTGAGAAGGTGAAAAATATGAGTGAGTTAAGTGACGGTTACAACATGGTTGGACTTTCTCAGGGTAACTTGATTGGACGAGGAGTAATTCAATTTTGTGACGGAGCACCTCCTGTGAAAAATCTCATATCACTAGCAGGTATTCATGCTGGTATCGCTTCTATTCCATTTTGTAAATCCGAATGGATTTGCGTTCTTCTGGATACATTAATCAAGTCAGAGATCTACAGCAACTATATCCAGGAACATTTGGCTCCAAGTGGTTATATTAAAATCCCGACAGACATCGATGCCTATTTAAAAGGGTGTAGGTTCCTTCCAAAGTTGAACAATGAAATCAAAGCGTCGAGAAATTCCACTTATAAGGAACGGTTTGCTAGCTTAGAGAACTTAGTCTTGATTATGTTTGAGCAAGACACTATACTGATACCCAAGGAGACCTCATGGTTTGGATATTTCCCAGACGGGGCCTTTGATCCTATTTTGCCTGCGCAAGAGACCATGTTGTACACTGAAGACTGGATTGGTTTGAAAACCTTGGACGAAGCTGGAAAGGTTAAGTTCATAAATGTGTCGGGGGGCCATCTGCAGATCTCTCGAAGCGACATGAAAACGTACATTGTGCCATACTTGGAAGATGAAGACTCAACGCAGCACAAGATAGCAGAGCCTTCATTTCCAACAACACTTTCGTTAATCTGGAACAACTACTTGGATCTTGTTGGACTCGGTGAGCATCAGAACGTGGTGCTGAGGGTTGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000323 GO:0002084 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0006464 GO:0006807 GO:0006810 GO:0006897 GO:0006898 GO:0006996 GO:0007005 GO:0007275 GO:0007610 GO:0008150 GO:0008152 GO:0008474 GO:0009056 GO:0009057 GO:0009791 GO:0009987 GO:0016043 GO:0016192 GO:0016787 GO:0016788 GO:0016790 GO:0018991 GO:0019098 GO:0019538 GO:0022414 GO:0030163 GO:0032501 GO:0032502 GO:0032504 GO:0035601 GO:0036211 GO:0042157 GO:0042159 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048609 GO:0048856 GO:0051179 GO:0051234 GO:0071704 GO:0071840 GO:0098599 GO:0098657 GO:0098732 GO:0098734 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00062 ko01100 ko01212 ko04142 map00062 map01100 map01212 map04142

Pfam Domains

Protein Families

Palm_thioest

Protein Analysis

337

Amino Acids

37.56

Weight (kDa)

4.96

Isoelectric Point (pI)

36.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013416)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60340 AT3G60340
fragaria_vesca	FvH4_7g09920
malus_domestica	MD07G1104400.v1.1
prunus_persica	Prupe.2G128000_v2.0.a1 Prupe.2G128000_v2.0.a1
pyrus_communis	pycom07g08940
rosa_chinensis	RchiOBHm_Chr1g0347441
rosa_laevigata	RLG00000028747
rosa_multiflora	Rmu_sc0009756.1_g000009
rosa_roxburghii	Rroxscaffold_4G00307770
rosa_rugosa	Rorug01G0186900 Rorug01G0187000
rosa_samantha	Rh1AG204400 Rh1BG170100 Rh1CG189500 Rh1DG200500
rosa_wichuraiana	Rw1G017150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	609
Acc16I	TGCGCA	1 cut(s)	738
Acc36I	ACCTGC	1 cut(s)	374
AclWI	GGATC	3 cut(s)	205, 716, 969
AcoI	YGGCCR	1 cut(s)	237
AcsI	RAATTY	1 cut(s)	598
AcuI	CTGAAG	1 cut(s)	780
AfaI	GTAC	3 cut(s)	18, 755, 863
AfiI	CCNNNNNNNGG	1 cut(s)	712
AflII	CTTAAG	1 cut(s)	148
AgsI	TTSAA	3 cut(s)	338, 574, 778
AjnI	CCWGG	2 cut(s)	209, 486
AjuI	GAANNNNNNNTTGG	6 cut(s)	753, 785, 919, 941, 951, 973
AluBI	AGCT	3 cut(s)	145, 627, 794
AluI	AGCT	3 cut(s)	145, 627, 794
Alw21I	GWGCWC	2 cut(s)	147, 355
Alw26I	GTCTC	2 cut(s)	677, 737
AlwI	GGATC	3 cut(s)	205, 716, 969
AoxI	GGCC	3 cut(s)	237, 714, 826
ApeKI	GCWGC	2 cut(s)	114, 898
ApoI	RAATTY	1 cut(s)	598
ArsI	GACNNNNNNTTYG	2 cut(s)	701, 733
AseI	ATTAAT	1 cut(s)	455
AspLEI	GCGC	1 cut(s)	739
AspS9I	GGNCC	2 cut(s)	714, 826
AsuHPI	GGTGA	3 cut(s)	37, 268, 989
AsuNHI	GCTAGC	1 cut(s)	623
BanII	GRGCYC	1 cut(s)	147
BbsI	GAAGAC	2 cut(s)	768, 894
Bbv12I	GWGCWC	2 cut(s)	147, 355
BbvCI	CCTCAGC	1 cut(s)	998
BbvI	GCAGC	2 cut(s)	126, 910
BccI	CCATC	3 cut(s)	56, 188, 837
BceAI	ACGGC	1 cut(s)	252
BcgI	CGANNNNNNTGC	2 cut(s)	824, 858
BciT130I	CCWGG	2 cut(s)	211, 488
BciVI	GTATCC	2 cut(s)	167, 442
BcoDI	GTCTC	2 cut(s)	677, 737
BfaI	CTAG	2 cut(s)	380, 624
BfmI	CTRYAG	2 cut(s)	472, 833
BfrI	CTTAAG	1 cut(s)	148
BfuAI	ACCTGC	1 cut(s)	374
BfuI	GTATCC	2 cut(s)	167, 442
BglII	AGATCT	2 cut(s)	468, 837
BisI	GCNGC	2 cut(s)	115, 899
BlsI	GCNGC	2 cut(s)	116, 900
Bme1390I	CCNGG	2 cut(s)	211, 488
BmgT120I	GGNCC	2 cut(s)	714, 826
BmiI	GGNNCC	5 cut(s)	166, 501, 560, 715, 827
BmrFI	CCNGG	2 cut(s)	211, 488
BmsI	GCATC	2 cut(s)	526, 991
BmtI	GCTAGC	1 cut(s)	627
BpiI	GAAGAC	2 cut(s)	768, 894
Bpu10I	CCTNAGC	1 cut(s)	998
Bsa29I	ATCGAT	1 cut(s)	534
BsaI	GGTCTC	2 cut(s)	677, 737
BsaJI	CCNNGG	4 cut(s)	121, 169, 678, 783
Bsc4I	CCNNNNNNNGG	1 cut(s)	712
Bse1I	ACTGG	4 cut(s)	14, 20, 161, 770
Bse3DI	GCAATG	1 cut(s)	240
BseBI	CCWGG	2 cut(s)	211, 488
BseCI	ATCGAT	1 cut(s)	534
BseDI	CCNNGG	4 cut(s)	121, 169, 678, 783
BseGI	GGATG	2 cut(s)	57, 199
BseLI	CCNNNNNNNGG	1 cut(s)	712
BseMI	GCAATG	1 cut(s)	240
BseMII	CTCAG	3 cut(s)	132, 320, 989
BseNI	ACTGG	4 cut(s)	14, 20, 161, 770
BseRI	GAGGAG	2 cut(s)	138, 342
BseXI	GCAGC	2 cut(s)	126, 910
BshFI	GGCC	3 cut(s)	239, 716, 828
BshVI	ATCGAT	1 cut(s)	534
BsiHKAI	GWGCWC	2 cut(s)	147, 355
BslI	CCNNNNNNNGG	1 cut(s)	712
BsmAI	GTCTC	2 cut(s)	677, 737
BsnI	GGCC	3 cut(s)	239, 716, 828
Bso31I	GGTCTC	2 cut(s)	677, 737
Bsp1286I	GDGCHC	2 cut(s)	147, 355
Bsp1407I	TGTACA	1 cut(s)	753
Bsp143I	GATC	5 cut(s)	197, 468, 721, 837, 961
BspANI	GGCC	3 cut(s)	239, 716, 828
BspCNI	CTCAG	3 cut(s)	133, 319, 990
BspDI	ATCGAT	1 cut(s)	534
BspLI	GGNNCC	5 cut(s)	166, 501, 560, 715, 827
BspMAI	CTGCAG	1 cut(s)	837
BspMI	ACCTGC	1 cut(s)	374
BspOI	GCTAGC	1 cut(s)	627
BspPI	GGATC	3 cut(s)	205, 716, 969
BspTI	CTTAAG	1 cut(s)	148
BspTNI	GGTCTC	2 cut(s)	677, 737
BsrDI	GCAATG	1 cut(s)	240
BsrGI	TGTACA	1 cut(s)	753
BsrI	ACTGG	4 cut(s)	14, 20, 161, 770
BssECI	CCNNGG	4 cut(s)	121, 169, 678, 783
BssMI	GATC	5 cut(s)	197, 468, 721, 837, 961
BssT1I	CCWWGG	3 cut(s)	169, 678, 783
Bst2UI	CCWGG	2 cut(s)	211, 488
Bst4CI	ACNGT	3 cut(s)	135, 284, 618
BstAFI	CTTAAG	1 cut(s)	148
BstAUI	TGTACA	1 cut(s)	753
BstC8I	GCNNGC	2 cut(s)	625, 735
BstDEI	CTNAG	5 cut(s)	141, 306, 628, 637, 998
BstF5I	GGATG	2 cut(s)	57, 199
BstHHI	GCGC	1 cut(s)	739
BstKTI	GATC	5 cut(s)	200, 471, 724, 840, 964
BstMAI	GTCTC	2 cut(s)	677, 737
BstMBI	GATC	5 cut(s)	197, 468, 721, 837, 961
BstMWI	GCNNNNNNNGC	1 cut(s)	401
BstNI	CCWGG	2 cut(s)	211, 488
BstSCI	CCNGG	2 cut(s)	209, 486
BstSFI	CTRYAG	2 cut(s)	472, 833
BstV1I	GCAGC	2 cut(s)	126, 910
BstV2I	GAAGAC	2 cut(s)	768, 894
BstX2I	RGATCY	3 cut(s)	468, 837, 961
BstYI	RGATCY	3 cut(s)	468, 837, 961
Bsu15I	ATCGAT	1 cut(s)	534
BsuI	GTATCC	2 cut(s)	167, 442
BsuRI	GGCC	3 cut(s)	239, 716, 828
BsuTUI	ATCGAT	1 cut(s)	534
BtsCI	GGATG	2 cut(s)	57, 199
BtsIMutI	CAGTG	3 cut(s)	109, 138, 756
BveI	ACCTGC	1 cut(s)	374
Cac8I	GCNNGC	2 cut(s)	625, 735
CfoI	GCGC	1 cut(s)	739
Cfr13I	GGNCC	2 cut(s)	714, 826
ClaI	ATCGAT	1 cut(s)	534
CseI	GACGC	1 cut(s)	579
Csp6I	GTAC	3 cut(s)	17, 754, 862
CviAII	CATG	6 cut(s)	95, 292, 392, 690, 748, 853
CviJI	RGCY	9 cut(s)	5, 145, 239, 500, 627, 716, 794, 828, 916
CviKI_1	RGCY	9 cut(s)	5, 145, 239, 500, 627, 716, 794, 828, 916
CviQI	GTAC	3 cut(s)	17, 754, 862
DdeI	CTNAG	5 cut(s)	141, 306, 628, 637, 998
DpnI	GATC	5 cut(s)	199, 470, 723, 839, 963
DpnII	GATC	5 cut(s)	197, 468, 721, 837, 961
DraI	TTTAAA	1 cut(s)	546
EaeI	YGGCCR	1 cut(s)	237
Ecl136II	GAGCTC	1 cut(s)	145
Eco130I	CCWWGG	3 cut(s)	169, 678, 783
Eco24I	GRGCYC	1 cut(s)	147
Eco31I	GGTCTC	2 cut(s)	677, 737
Eco53kI	GAGCTC	1 cut(s)	145
Eco57I	CTGAAG	1 cut(s)	780
EcoICRI	GAGCTC	1 cut(s)	145
EcoO109I	RGGNCCY	1 cut(s)	714
EcoRII	CCWGG	2 cut(s)	209, 486
EcoT14I	CCWWGG	3 cut(s)	169, 678, 783
EcoT38I	GRGCYC	1 cut(s)	147
ErhI	CCWWGG	3 cut(s)	169, 678, 783
FaeI	CATG	6 cut(s)	98, 295, 395, 693, 751, 856
FatI	CATG	6 cut(s)	94, 291, 391, 689, 747, 852
Fnu4HI	GCNGC	2 cut(s)	115, 899
FokI	GGATG	2 cut(s)	44, 206
FriOI	GRGCYC	1 cut(s)	147
Fsp4HI	GCNGC	2 cut(s)	115, 899
FspBI	CTAG	2 cut(s)	380, 624
FspI	TGCGCA	1 cut(s)	738
GlaI	GCGC	1 cut(s)	738
GluI	GCNGC	2 cut(s)	115, 899
HaeIII	GGCC	3 cut(s)	239, 716, 828
HgaI	GACGC	1 cut(s)	579
HhaI	GCGC	1 cut(s)	739
Hin1II	CATG	6 cut(s)	98, 295, 395, 693, 751, 856
Hin6I	GCGC	1 cut(s)	737
HinP1I	GCGC	1 cut(s)	737
HinfI	GANTC	5 cut(s)	99, 126, 206, 890, 972
HphI	GGTGA	3 cut(s)	37, 268, 989
Hpy166II	GTNNAC	2 cut(s)	138, 756
Hpy188I	TCNGA	4 cut(s)	229, 427, 466, 987
Hpy188III	TCNNGA	6 cut(s)	446, 523, 594, 643, 843, 946
Hpy8I	GTNNAC	2 cut(s)	138, 756
Hpy99I	CGWCG	1 cut(s)	595
HpyAV	CCTTC	3 cut(s)	247, 572, 927
HpyCH4III	ACNGT	3 cut(s)	135, 284, 618
HpyCH4IV	ACGT	2 cut(s)	860, 990
HpyCH4V	TGCA	3 cut(s)	114, 180, 835
HpyF10VI	GCNNNNNNNGC	1 cut(s)	401
HpyF3I	CTNAG	5 cut(s)	141, 306, 628, 637, 998
HpySE526I	ACGT	2 cut(s)	860, 990
Hsp92II	CATG	6 cut(s)	98, 295, 395, 693, 751, 856
HspAI	GCGC	1 cut(s)	737
Kzo9I	GATC	5 cut(s)	197, 468, 721, 837, 961
LmnI	GCTCC	2 cut(s)	350, 505
Lsp1109I	GCAGC	2 cut(s)	126, 910
LweI	GCATC	2 cut(s)	526, 991
MaeI	CTAG	2 cut(s)	380, 624
MaeII	ACGT	2 cut(s)	860, 990
MaeIII	GTNAC	5 cut(s)	127, 278, 284, 311, 344
MalI	GATC	5 cut(s)	199, 470, 723, 839, 963
MboI	GATC	5 cut(s)	197, 468, 721, 837, 961
MboII	GAAGA	9 cut(s)	22, 25, 28, 31, 34, 434, 773, 893, 899
MflI	RGATCY	3 cut(s)	468, 837, 961
MhlI	GDGCHC	2 cut(s)	147, 355
MluCI	AATT	4 cut(s)	186, 333, 338, 598
MlyI	GAGTC	3 cut(s)	135, 884, 966
MmeI	TCCRAC	3 cut(s)	277, 949, 950
MnlI	CCTC	5 cut(s)	116, 320, 366, 697, 993
MseI	TTAA	7 cut(s)	149, 275, 455, 516, 545, 804, 941
MslI	CAYNNNNRTG	1 cut(s)	815
MspCI	CTTAAG	1 cut(s)	148
MspR9I	CCNGG	2 cut(s)	211, 488
MvaI	CCWGG	2 cut(s)	211, 488
MwoI	GCNNNNNNNGC	1 cut(s)	401
NdeII	GATC	5 cut(s)	197, 468, 721, 837, 961
NheI	GCTAGC	1 cut(s)	623
NlaIII	CATG	6 cut(s)	98, 295, 395, 693, 751, 856
NlaIV	GGNNCC	5 cut(s)	166, 501, 560, 715, 827
NmuCI	GTSAC	3 cut(s)	127, 278, 344
NsbI	TGCGCA	1 cut(s)	738
PfeI	GAWTC	2 cut(s)	99, 206
PfoI	TCCNGGA	2 cut(s)	209, 486
PkrI	GCNGC	2 cut(s)	116, 900
PleI	GAGTC	3 cut(s)	134, 884, 966
PpsI	GAGTC	3 cut(s)	134, 884, 966
PshBI	ATTAAT	1 cut(s)	455
PsiI	TTATAA	1 cut(s)	609
Psp124BI	GAGCTC	1 cut(s)	147
Psp6I	CCWGG	2 cut(s)	209, 486
PspGI	CCWGG	2 cut(s)	209, 486
PspN4I	GGNNCC	5 cut(s)	166, 501, 560, 715, 827
PspPI	GGNCC	2 cut(s)	714, 826
PstI	CTGCAG	1 cut(s)	837
PsuI	RGATCY	3 cut(s)	468, 837, 961
RsaI	GTAC	3 cut(s)	18, 755, 863
RsaNI	GTAC	3 cut(s)	17, 754, 862
RseI	CAYNNNNRTG	1 cut(s)	815
SacI	GAGCTC	1 cut(s)	147
SaqAI	TTAA	7 cut(s)	149, 275, 455, 516, 545, 804, 941
SatI	GCNGC	2 cut(s)	115, 899
Sau3AI	GATC	5 cut(s)	197, 468, 721, 837, 961
Sau96I	GGNCC	2 cut(s)	714, 826
SchI	GAGTC	3 cut(s)	135, 884, 966
ScrFI	CCNGG	2 cut(s)	211, 488
SduI	GDGCHC	2 cut(s)	147, 355
SfaNI	GCATC	2 cut(s)	526, 991
SfcI	CTRYAG	2 cut(s)	472, 833
SmiMI	CAYNNNNRTG	1 cut(s)	815
SmlI	CTYRAG	1 cut(s)	148
SmoI	CTYRAG	1 cut(s)	148
Sse9I	AATT	4 cut(s)	186, 333, 338, 598
SspMI	CTAG	2 cut(s)	380, 624
SstI	GAGCTC	1 cut(s)	147
StyD4I	CCNGG	2 cut(s)	209, 486
StyI	CCWWGG	3 cut(s)	169, 678, 783
TaaI	ACNGT	3 cut(s)	135, 284, 618
TaiI	ACGT	2 cut(s)	863, 993
TaqI	TCGA	3 cut(s)	534, 593, 844
TasI	AATT	4 cut(s)	186, 333, 338, 598
TatI	WGTACW	1 cut(s)	753
TfiI	GAWTC	2 cut(s)	99, 206
Tru1I	TTAA	7 cut(s)	149, 275, 455, 516, 545, 804, 941
Tru9I	TTAA	7 cut(s)	149, 275, 455, 516, 545, 804, 941
TscAI	CASTG	3 cut(s)	109, 145, 763
TseFI	GTSAC	3 cut(s)	127, 278, 344
TseI	GCWGC	2 cut(s)	114, 898
Tsp45I	GTSAC	3 cut(s)	127, 278, 344
TspDTI	ATGAA	7 cut(s)	83, 380, 594, 799, 869, 900, 909
TspGWI	ACGGA	1 cut(s)	363
TspRI	CASTG	3 cut(s)	109, 145, 763
Vha464I	CTTAAG	1 cut(s)	148
VspI	ATTAAT	1 cut(s)	455
XapI	RAATTY	1 cut(s)	598
XspI	CTAG	2 cut(s)	380, 624

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.