Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0013416

Physical Location & Seq

Genomic Coordinates Reverse (-)

18520748 .. 18527393

Gene Structure 6646 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G128000.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGACTTCTCCACCAGTATCAATCATTTTCATCTTCTTCTTCATCATCACTCTTATCCCACTAATCCACTCTGTTCCTTTCATTGTTTTTCATGGCATTGGAGATAAATGCAGCAACCGAGGAGTCACACAATTTACTGAGCTCTTAAGCAACTGGTCGGGTTCTCAAGGATACTGCATAGAAATTGGGGATGGATCGTGGGATTCCTGGACTGTGCCCTTATTGGAACAGACGACCATTGCTTGCGAGAAGGTGAAAAATATAAGTGAATTAAGTGAGGGTTACAACATGGTTGGACTTTCTCAGGGTAACATGGTTGGTCGAGGAGTAATTGAATTTTGTGATGGGGGACCTCCTGTTAAGAATTTTATATCACTAGCAGGTCCCCATGCTGGTACTGCTTCTATTCCATTTTGTGGATCCGAATGGATTTGTGCGCTTCTGGACAACTTAATCAAGTCAGAGATCTACAGCAGCTATGTCCAGGAACATTTGTCTCCAAGTGGTTATCTTAAAATCCCTACTGACATTGCTGCCTATTTAAAAGGGTGTAGGTTCCTTCCAAGGTTGAACAATGAAAGAAAGACTATGAGCAATTCCACTTATAAGGAACGGTTTTCAAGCTTAGAGAAGTTGGTATTAATTATGTTTGAGCAGGACACTATATTGATACCCAAGGAGACCTCCTGGTTTGGATATTTCCCAGATGGGGCCTTTGATCCTATTTTGCCCGCGCAAGAGACCAAGCTGTACACTGAAGACTGGATTGGCTTGAAAACCTTGGATGAAGCTGGAAAAGTTAAGTTCATTAAGGTATCAGGGGGCCATCTTCACATCTCTCGAAGCGACATGAAAAAGTATGTTGTGCCATACTTGGAAAACGAAGCCTCAATGCAGCCCAAGATAGCAGAGCCTTCATCACATAAATCATTTTCATCCATCTGGAACAACTTCCTGGATCTTTTCGGGCTCACAGAGCATCGGCAATTGGTATTGACTGTGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000323 GO:0002084 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0006464 GO:0006807 GO:0006810 GO:0006897 GO:0006898 GO:0006996 GO:0007005 GO:0007275 GO:0007610 GO:0008150 GO:0008152 GO:0008474 GO:0009056 GO:0009057 GO:0009791 GO:0009987 GO:0016043 GO:0016192 GO:0016787 GO:0016788 GO:0016790 GO:0018991 GO:0019098 GO:0019538 GO:0022414 GO:0030163 GO:0032501 GO:0032502 GO:0032504 GO:0035601 GO:0036211 GO:0042157 GO:0042159 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048609 GO:0048856 GO:0051179 GO:0051234 GO:0071704 GO:0071840 GO:0098599 GO:0098657 GO:0098732 GO:0098734 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00062 ko01100 ko01212 ko04142 map00062 map01100 map01212 map04142

Pfam Domains

Protein Families

Palm_thioest

Protein Analysis

336

Amino Acids

37.44

Weight (kDa)

5.65

Isoelectric Point (pI)

36.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013416)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60340 AT3G60340
fragaria_vesca	FvH4_7g09920
malus_domestica	MD07G1104400.v1.1
prunus_persica	Prupe.2G128000_v2.0.a1 Prupe.2G128000_v2.0.a1
pyrus_communis	pycom07g08940
rosa_chinensis	RchiOBHm_Chr1g0347441
rosa_laevigata	RLG00000028747
rosa_multiflora	Rmu_sc0009756.1_g000009
rosa_roxburghii	Rroxscaffold_4G00307770
rosa_rugosa	Rorug01G0186900 Rorug01G0187000
rosa_samantha	Rh1AG204400 Rh1BG170100 Rh1CG189500 Rh1DG200500
rosa_wichuraiana	Rw1G017150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	606
Acc36I	ACCTGC	1 cut(s)	371
AccB7I	CCANNNNNTGG	1 cut(s)	416
AccII	CGCG	1 cut(s)	734
AciI	CCGC	1 cut(s)	732
AclWI	GGATC	5 cut(s)	202, 414, 427, 713, 966
AcsI	RAATTY	2 cut(s)	335, 364
AcuI	CTGAAG	1 cut(s)	777
AfaI	GTAC	2 cut(s)	397, 752
AfiI	CCNNNNNNNGG	3 cut(s)	392, 416, 709
AflII	CTTAAG	1 cut(s)	145
AgsI	TTSAA	4 cut(s)	335, 571, 621, 775
AjnI	CCWGG	4 cut(s)	206, 483, 686, 954
AjuI	GAANNNNNNNTTGG	2 cut(s)	750, 782
AluBI	AGCT	5 cut(s)	142, 477, 624, 748, 791
AluI	AGCT	5 cut(s)	142, 477, 624, 748, 791
Alw21I	GWGCWC	1 cut(s)	144
Alw26I	GTCTC	3 cut(s)	501, 674, 734
AlwI	GGATC	5 cut(s)	202, 414, 427, 713, 966
AoxI	GGCC	2 cut(s)	711, 823
ApeKI	GCWGC	4 cut(s)	111, 474, 533, 895
ApoI	RAATTY	2 cut(s)	335, 364
AseI	ATTAAT	1 cut(s)	641
Asp700I	GAANNNNTTC	1 cut(s)	950
AspLEI	GCGC	2 cut(s)	439, 736
AspS9I	GGNCC	4 cut(s)	350, 383, 711, 823
AsuHPI	GGTGA	1 cut(s)	265
AvaII	GGWCC	2 cut(s)	350, 383
BaeGI	GKGCMC	1 cut(s)	219
BamHI	GGATCC	1 cut(s)	419
BanII	GRGCYC	2 cut(s)	144, 972
BbsI	GAAGAC	1 cut(s)	765
Bbv12I	GWGCWC	1 cut(s)	144
BbvI	GCAGC	4 cut(s)	123, 486, 520, 907
BccI	CCATC	5 cut(s)	185, 338, 701, 834, 947
BciT130I	CCWGG	4 cut(s)	208, 485, 688, 956
BciVI	GTATCC	1 cut(s)	164
BcoDI	GTCTC	3 cut(s)	501, 674, 734
BfaI	CTAG	1 cut(s)	377
BfmI	CTRYAG	1 cut(s)	469
BfrI	CTTAAG	1 cut(s)	145
BfuAI	ACCTGC	1 cut(s)	371
BfuI	GTATCC	1 cut(s)	164
BglII	AGATCT	1 cut(s)	465
BisI	GCNGC	4 cut(s)	112, 475, 534, 896
BlsI	GCNGC	4 cut(s)	113, 476, 535, 897
Bme1390I	CCNGG	4 cut(s)	208, 485, 688, 956
Bme18I	GGWCC	2 cut(s)	350, 383
BmgT120I	GGNCC	4 cut(s)	350, 383, 711, 823
BmiI	GGNNCC	6 cut(s)	351, 385, 421, 557, 712, 824
BmrFI	CCNGG	4 cut(s)	208, 485, 688, 956
BmsI	GCATC	1 cut(s)	988
BpiI	GAAGAC	1 cut(s)	765
BpuEI	CTTGAG	1 cut(s)	150
BsaI	GGTCTC	2 cut(s)	674, 734
BsaJI	CCNNGG	4 cut(s)	118, 563, 675, 780
Bsc4I	CCNNNNNNNGG	3 cut(s)	392, 416, 709
Bse1I	ACTGG	3 cut(s)	14, 158, 767
Bse3DI	GCAATG	2 cut(s)	237, 528
BseBI	CCWGG	4 cut(s)	208, 485, 688, 956
BseDI	CCNNGG	4 cut(s)	118, 563, 675, 780
BseGI	GGATG	3 cut(s)	196, 790, 935
BseLI	CCNNNNNNNGG	3 cut(s)	392, 416, 709
BseMI	GCAATG	2 cut(s)	237, 528
BseMII	CTCAG	2 cut(s)	129, 317
BseNI	ACTGG	3 cut(s)	14, 158, 767
BseRI	GAGGAG	2 cut(s)	135, 339
BseSI	GKGCMC	1 cut(s)	219
BseXI	GCAGC	4 cut(s)	123, 486, 520, 907
Bsh1236I	CGCG	1 cut(s)	734
BshFI	GGCC	2 cut(s)	713, 825
BsiHKAI	GWGCWC	1 cut(s)	144
BslFI	GGGAC	2 cut(s)	363, 369
BslI	CCNNNNNNNGG	3 cut(s)	392, 416, 709
BsmAI	GTCTC	3 cut(s)	501, 674, 734
BsmFI	GGGAC	2 cut(s)	363, 369
BsnI	GGCC	2 cut(s)	713, 825
Bso31I	GGTCTC	2 cut(s)	674, 734
Bsp1286I	GDGCHC	3 cut(s)	144, 219, 972
Bsp1407I	TGTACA	1 cut(s)	750
Bsp143I	GATC	5 cut(s)	194, 419, 465, 718, 958
BspACI	CCGC	1 cut(s)	732
BspANI	GGCC	2 cut(s)	713, 825
BspCNI	CTCAG	2 cut(s)	130, 316
BspFNI	CGCG	1 cut(s)	734
BspLI	GGNNCC	6 cut(s)	351, 385, 421, 557, 712, 824
BspMI	ACCTGC	1 cut(s)	371
BspPI	GGATC	5 cut(s)	202, 414, 427, 713, 966
BspTI	CTTAAG	1 cut(s)	145
BspTNI	GGTCTC	2 cut(s)	674, 734
BsrDI	GCAATG	2 cut(s)	237, 528
BsrGI	TGTACA	1 cut(s)	750
BsrI	ACTGG	3 cut(s)	14, 158, 767
BssECI	CCNNGG	4 cut(s)	118, 563, 675, 780
BssMI	GATC	5 cut(s)	194, 419, 465, 718, 958
BssT1I	CCWWGG	3 cut(s)	563, 675, 780
Bst2UI	CCWGG	4 cut(s)	208, 485, 688, 956
Bst4CI	ACNGT	3 cut(s)	214, 615, 1000
BstAFI	CTTAAG	1 cut(s)	145
BstAUI	TGTACA	1 cut(s)	750
BstC8I	GCNNGC	2 cut(s)	244, 732
BstDEI	CTNAG	3 cut(s)	138, 303, 625
BstF5I	GGATG	3 cut(s)	196, 790, 935
BstFNI	CGCG	1 cut(s)	734
BstHHI	GCGC	2 cut(s)	439, 736
BstKTI	GATC	5 cut(s)	197, 422, 468, 721, 961
BstMAI	GTCTC	3 cut(s)	501, 674, 734
BstMBI	GATC	5 cut(s)	194, 419, 465, 718, 958
BstMWI	GCNNNNNNNGC	2 cut(s)	398, 976
BstNI	CCWGG	4 cut(s)	208, 485, 688, 956
BstSCI	CCNGG	4 cut(s)	206, 483, 686, 954
BstSFI	CTRYAG	1 cut(s)	469
BstSLI	GKGCMC	1 cut(s)	219
BstUI	CGCG	1 cut(s)	734
BstV1I	GCAGC	4 cut(s)	123, 486, 520, 907
BstV2I	GAAGAC	1 cut(s)	765
BstX2I	RGATCY	3 cut(s)	419, 465, 958
BstYI	RGATCY	3 cut(s)	419, 465, 958
BsuI	GTATCC	1 cut(s)	164
BsuRI	GGCC	2 cut(s)	713, 825
BtsCI	GGATG	3 cut(s)	196, 790, 935
BtsIMutI	CAGTG	1 cut(s)	753
BveI	ACCTGC	1 cut(s)	371
Cac8I	GCNNGC	2 cut(s)	244, 732
CfoI	GCGC	2 cut(s)	439, 736
Cfr13I	GGNCC	4 cut(s)	350, 383, 711, 823
Csp6I	GTAC	2 cut(s)	396, 751
CviAII	CATG	5 cut(s)	92, 289, 313, 389, 850
CviQI	GTAC	2 cut(s)	396, 751
DdeI	CTNAG	3 cut(s)	138, 303, 625
DpnI	GATC	5 cut(s)	196, 421, 467, 720, 960
DpnII	GATC	5 cut(s)	194, 419, 465, 718, 958
DraI	TTTAAA	1 cut(s)	543
Ecl136II	GAGCTC	1 cut(s)	142
Eco130I	CCWWGG	3 cut(s)	563, 675, 780
Eco24I	GRGCYC	2 cut(s)	144, 972
Eco31I	GGTCTC	2 cut(s)	674, 734
Eco47I	GGWCC	2 cut(s)	350, 383
Eco53kI	GAGCTC	1 cut(s)	142
Eco57I	CTGAAG	1 cut(s)	777
EcoICRI	GAGCTC	1 cut(s)	142
EcoO109I	RGGNCCY	3 cut(s)	350, 383, 711
EcoRII	CCWGG	4 cut(s)	206, 483, 686, 954
EcoT14I	CCWWGG	3 cut(s)	563, 675, 780
EcoT38I	GRGCYC	2 cut(s)	144, 972
ErhI	CCWWGG	3 cut(s)	563, 675, 780
FaeI	CATG	5 cut(s)	95, 292, 316, 392, 853
FaqI	GGGAC	2 cut(s)	363, 369
FatI	CATG	5 cut(s)	91, 288, 312, 388, 849
FauI	CCCGC	1 cut(s)	739
Fnu4HI	GCNGC	4 cut(s)	112, 475, 534, 896
FokI	GGATG	3 cut(s)	203, 797, 922
FriOI	GRGCYC	2 cut(s)	144, 972
Fsp4HI	GCNGC	4 cut(s)	112, 475, 534, 896
FspBI	CTAG	1 cut(s)	377
GlaI	GCGC	2 cut(s)	438, 735
GluI	GCNGC	4 cut(s)	112, 475, 534, 896
HaeIII	GGCC	2 cut(s)	713, 825
HhaI	GCGC	2 cut(s)	439, 736
Hin1II	CATG	5 cut(s)	95, 292, 316, 392, 853
Hin6I	GCGC	2 cut(s)	437, 734
HinP1I	GCGC	2 cut(s)	437, 734
HindIII	AAGCTT	1 cut(s)	622
HinfI	GANTC	2 cut(s)	123, 203
HphI	GGTGA	1 cut(s)	265
Hpy166II	GTNNAC	1 cut(s)	753
Hpy188I	TCNGA	2 cut(s)	424, 463
Hpy188III	TCNNGA	3 cut(s)	443, 840, 943
Hpy8I	GTNNAC	1 cut(s)	753
HpyAV	CCTTC	3 cut(s)	244, 569, 924
HpyCH4III	ACNGT	3 cut(s)	214, 615, 1000
HpyCH4V	TGCA	3 cut(s)	111, 177, 895
HpyF10VI	GCNNNNNNNGC	2 cut(s)	398, 976
HpyF3I	CTNAG	3 cut(s)	138, 303, 625
Hsp92II	CATG	5 cut(s)	95, 292, 316, 392, 853
HspAI	GCGC	2 cut(s)	437, 734
Kzo9I	GATC	5 cut(s)	194, 419, 465, 718, 958
Lsp1109I	GCAGC	4 cut(s)	123, 486, 520, 907
LweI	GCATC	1 cut(s)	988
MaeI	CTAG	1 cut(s)	377
MaeIII	GTNAC	3 cut(s)	124, 281, 308
MalI	GATC	5 cut(s)	196, 421, 467, 720, 960
MboI	GATC	5 cut(s)	194, 419, 465, 718, 958
MboII	GAAGA	5 cut(s)	25, 28, 31, 770, 821
MfeI	CAATTG	1 cut(s)	986
MflI	RGATCY	3 cut(s)	419, 465, 958
MhlI	GDGCHC	3 cut(s)	144, 219, 972
MluCI	AATT	9 cut(s)	131, 183, 269, 330, 335, 364, 595, 642, 986
MlyI	GAGTC	1 cut(s)	132
MmeI	TCCRAC	1 cut(s)	274
MnlI	CCTC	6 cut(s)	113, 271, 317, 363, 694, 898
MroXI	GAANNNNTTC	1 cut(s)	950
MspCI	CTTAAG	1 cut(s)	145
MspR9I	CCNGG	4 cut(s)	208, 485, 688, 956
MunI	CAATTG	1 cut(s)	986
MvaI	CCWGG	4 cut(s)	208, 485, 688, 956
MvnI	CGCG	1 cut(s)	734
MwoI	GCNNNNNNNGC	2 cut(s)	398, 976
NdeII	GATC	5 cut(s)	194, 419, 465, 718, 958
NlaIII	CATG	5 cut(s)	95, 292, 316, 392, 853
NlaIV	GGNNCC	6 cut(s)	351, 385, 421, 557, 712, 824
NmuCI	GTSAC	1 cut(s)	124
PdmI	GAANNNNTTC	1 cut(s)	950
PfeI	GAWTC	1 cut(s)	203
PflMI	CCANNNNNTGG	1 cut(s)	416
PfoI	TCCNGGA	3 cut(s)	206, 483, 954
PkrI	GCNGC	4 cut(s)	113, 476, 535, 897
PleI	GAGTC	1 cut(s)	131
PpsI	GAGTC	1 cut(s)	131
PpuMI	RGGWCCY	2 cut(s)	350, 383
PshBI	ATTAAT	1 cut(s)	641
PsiI	TTATAA	1 cut(s)	606
Psp124BI	GAGCTC	1 cut(s)	144
Psp5II	RGGWCCY	2 cut(s)	350, 383
Psp6I	CCWGG	4 cut(s)	206, 483, 686, 954
PspGI	CCWGG	4 cut(s)	206, 483, 686, 954
PspN4I	GGNNCC	6 cut(s)	351, 385, 421, 557, 712, 824
PspPI	GGNCC	4 cut(s)	350, 383, 711, 823
PspPPI	RGGWCCY	2 cut(s)	350, 383
PsuI	RGATCY	3 cut(s)	419, 465, 958
RsaI	GTAC	2 cut(s)	397, 752
RsaNI	GTAC	2 cut(s)	396, 751
SacI	GAGCTC	1 cut(s)	144
SatI	GCNGC	4 cut(s)	112, 475, 534, 896
Sau3AI	GATC	5 cut(s)	194, 419, 465, 718, 958
Sau96I	GGNCC	4 cut(s)	350, 383, 711, 823
SchI	GAGTC	1 cut(s)	132
ScrFI	CCNGG	4 cut(s)	208, 485, 688, 956
SduI	GDGCHC	3 cut(s)	144, 219, 972
SfaNI	GCATC	1 cut(s)	988
SfcI	CTRYAG	1 cut(s)	469
SinI	GGWCC	2 cut(s)	350, 383
SmlI	CTYRAG	2 cut(s)	145, 165
SmoI	CTYRAG	2 cut(s)	145, 165
Sse9I	AATT	9 cut(s)	131, 183, 269, 330, 335, 364, 595, 642, 986
SsiI	CCGC	1 cut(s)	732
SspMI	CTAG	1 cut(s)	377
SstI	GAGCTC	1 cut(s)	144
StyD4I	CCNGG	4 cut(s)	206, 483, 686, 954
StyI	CCWWGG	3 cut(s)	563, 675, 780
TaaI	ACNGT	3 cut(s)	214, 615, 1000
TaqI	TCGA	2 cut(s)	322, 841
TasI	AATT	9 cut(s)	131, 183, 269, 330, 335, 364, 595, 642, 986
TatI	WGTACW	1 cut(s)	750
TfiI	GAWTC	1 cut(s)	203
TscAI	CASTG	1 cut(s)	760
TseFI	GTSAC	1 cut(s)	124
TseI	GCWGC	4 cut(s)	111, 474, 533, 895
Tsp45I	GTSAC	1 cut(s)	124
TspRI	CASTG	1 cut(s)	760
Van91I	CCANNNNNTGG	1 cut(s)	416
Vha464I	CTTAAG	1 cut(s)	145
VpaK11BI	GGWCC	2 cut(s)	350, 383
VspI	ATTAAT	1 cut(s)	641
XapI	RAATTY	2 cut(s)	335, 364
XmnI	GAANNNNTTC	1 cut(s)	950
XspI	CTAG	1 cut(s)	377

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.