Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0013416

Physical Location & Seq

Genomic Coordinates Reverse (-)

25842841 .. 25849462

Gene Structure 6622 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0186900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGGCAGCGAGGCAAATGGAAGAGATACAGCGGAAGCTGGCGACTTTGAACTACCCGAGAGCCAATGCGCCTGCTCAGTCTCTCCTCTTCGCCGGCATGGAGCGCTATGCTCTTCTCGAGTGGCTCTTCTTCCGATTGCTGGGGGACAAGTCACCTTTCTCTCAACAAAGTCTTCAAGGGGACGCCATGGATCGCGACGAAGAAACTGCCCGCATTCAATATTTGGCAGAGATTGCGAAGTTTTTGGGTATTACAAATACAATTGACACAGAAGCCATTCAAGGACGAGGAAGCTATGAAGATCGCACTGAAATGCTTCGTTTAATTGTAGATCTCGTGGAGGCAAGCATTTTTGCTGATAATCCAGAATGGAGTATAGATGAGCAGGTAGCAAAGGATATACAGCTAATTGATTCCATTGCAGAGAGACAAGCTCAAATATTCTCGGAAGAGTGCAAATTGTTTCCCGCTGATGTTCAGATTCAGTCTATATATCCATTGCATGATGTTTCTGAGCTGGAGCAAAAGCTTACAGAACAATCAAAGATACTCTCAAGTCTTCAACAAAAGGTTGATGATTTGGCATCAAAGCATGCTTACAACCCAGATGAGGAGTATGCAGAGGTAGAATCCAGATTGCGTTCACATTTGGATTCTTTTCTAGAAACTGCAAGATCATTCAATATGATTTACACCAAGGAAATACGTCCCTGGACACACATGATGGAGGTACCCCAGCTCCATGGGTTCGGGCCAGCTGCCAATCGCTTGTTGGAGGCATATAAGATGCTTTTGAAGTTCCTAGGGAACTTGAGGAATCTTAGAGACTCACATGCTGCTCTTGCTGTTGGATCATCTGACTCAGTTGCTGGTGAGCCCTCTTCTGTCACAAGAATAATCTCAGAATGTGAATCTGCGTTGACATTCTTAAATCGTGACCTTGGAATTCTCTCGGCTTCCATTGCTCGAGAGCAAGGTGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000323 GO:0002084 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0006464 GO:0006807 GO:0006810 GO:0006897 GO:0006898 GO:0006996 GO:0007005 GO:0007275 GO:0007610 GO:0008150 GO:0008152 GO:0008474 GO:0009056 GO:0009057 GO:0009791 GO:0009987 GO:0016043 GO:0016192 GO:0016787 GO:0016788 GO:0016790 GO:0018991 GO:0019098 GO:0019538 GO:0022414 GO:0030163 GO:0032501 GO:0032502 GO:0032504 GO:0035601 GO:0036211 GO:0042157 GO:0042159 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048609 GO:0048856 GO:0051179 GO:0051234 GO:0071704 GO:0071840 GO:0098599 GO:0098657 GO:0098732 GO:0098734 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00062 ko01100 ko01212 ko04142 map00062 map01100 map01212 map04142

Pfam Domains

Protein Families

Palm_thioest

Protein Analysis

327

Amino Acids

37.01

Weight (kDa)

4.8

Isoelectric Point (pI)

49.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Plant_NMP1	PF06694	6 - 324	3.6e-194	Plant nuclear matrix protein 1 (NMP1)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0013416)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60340 AT3G60340
fragaria_vesca	FvH4_7g09920
malus_domestica	MD07G1104400.v1.1
prunus_persica	Prupe.2G128000_v2.0.a1 Prupe.2G128000_v2.0.a1
pyrus_communis	pycom07g08940
rosa_chinensis	RchiOBHm_Chr1g0347441
rosa_laevigata	RLG00000028747
rosa_multiflora	Rmu_sc0009756.1_g000009
rosa_roxburghii	Rroxscaffold_4G00307770
rosa_rugosa	Rorug01G0186900 Rorug01G0187000
rosa_samantha	Rh1AG204400 Rh1BG170100 Rh1CG189500 Rh1DG200500
rosa_wichuraiana	Rw1G017150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	376
Acc65I	GGTACC	1 cut(s)	730
AccB1I	GGYRCC	1 cut(s)	730
AccII	CGCG	1 cut(s)	195
AciI	CCGC	3 cut(s)	31, 211, 468
AclWI	GGATC	2 cut(s)	198, 859
AcsI	RAATTY	1 cut(s)	945
AcyI	GRCGYC	1 cut(s)	183
AfaI	GTAC	1 cut(s)	732
AfeI	AGCGCT	1 cut(s)	104
AfiI	CCNNNNNNNGG	2 cut(s)	139, 610
AgsI	TTSAA	7 cut(s)	49, 176, 218, 281, 563, 682, 796
AjnI	CCWGG	1 cut(s)	710
AluBI	AGCT	8 cut(s)	37, 294, 406, 434, 517, 529, 739, 758
AluI	AGCT	8 cut(s)	37, 294, 406, 434, 517, 529, 739, 758
Alw26I	GTCTC	3 cut(s)	84, 421, 819
AlwI	GGATC	2 cut(s)	198, 859
AlwNI	CAGNNNCTG	1 cut(s)	869
Ama87I	CYCGRG	3 cut(s)	55, 116, 966
Aor51HI	AGCGCT	1 cut(s)	104
AoxI	GGCC	1 cut(s)	752
ApeKI	GCWGC	3 cut(s)	5, 758, 836
ApoI	RAATTY	1 cut(s)	945
Asp700I	GAANNNNTTC	2 cut(s)	276, 315
Asp718I	GGTACC	1 cut(s)	730
AspA2I	CCTAGG	1 cut(s)	802
AspLEI	GCGC	2 cut(s)	70, 105
AspS9I	GGNCC	1 cut(s)	752
AsuHPI	GGTGA	2 cut(s)	144, 884
AvaI	CYCGRG	3 cut(s)	55, 116, 966
AvrII	CCTAGG	1 cut(s)	802
BanI	GGYRCC	1 cut(s)	730
BanII	GRGCYC	1 cut(s)	879
BauI	CACGAG	1 cut(s)	335
BbsI	GAAGAC	2 cut(s)	164, 551
BbvI	GCAGC	3 cut(s)	17, 745, 823
BccI	CCATC	1 cut(s)	718
BcgI	CGANNNNNNTGC	2 cut(s)	188, 222
BciT130I	CCWGG	1 cut(s)	712
BcoDI	GTCTC	3 cut(s)	84, 421, 819
BfaI	CTAG	2 cut(s)	662, 803
BfoI	RGCGCY	1 cut(s)	106
BfuAI	ACCTGC	1 cut(s)	376
BglII	AGATCT	1 cut(s)	331
BisI	GCNGC	3 cut(s)	6, 759, 837
BlnI	CCTAGG	1 cut(s)	802
BlsI	GCNGC	3 cut(s)	7, 760, 838
Bme1390I	CCNGG	1 cut(s)	712
BmeT110I	CYCGRG	3 cut(s)	55, 116, 966
BmgT120I	GGNCC	1 cut(s)	752
BmiI	GGNNCC	1 cut(s)	732
BmrFI	CCNGG	1 cut(s)	712
BmsI	GCATC	2 cut(s)	593, 777
BpiI	GAAGAC	2 cut(s)	164, 551
BplI	GAGNNNNNCTC	2 cut(s)	418, 450
BpmI	CTGGAG	1 cut(s)	539
BpuEI	CTTGAG	2 cut(s)	538, 832
BsaHI	GRCGYC	1 cut(s)	183
BsaJI	CCNNGG	6 cut(s)	186, 696, 710, 742, 802, 940
BsaXI	ACNNNNNCTCC	2 cut(s)	723, 753
Bsc4I	CCNNNNNNNGG	2 cut(s)	139, 610
Bse118I	RCCGGY	1 cut(s)	92
Bse3DI	GCAATG	3 cut(s)	417, 497, 960
BseBI	CCWGG	1 cut(s)	712
BseDI	CCNNGG	6 cut(s)	186, 696, 710, 742, 802, 940
BseLI	CCNNNNNNNGG	2 cut(s)	139, 610
BseMI	GCAATG	3 cut(s)	417, 497, 960
BseMII	CTCAG	4 cut(s)	89, 504, 876, 915
BseRI	GAGGAG	2 cut(s)	74, 626
BseXI	GCAGC	3 cut(s)	17, 745, 823
BseYI	CCCAGC	2 cut(s)	139, 735
Bsh1236I	CGCG	1 cut(s)	195
BshFI	GGCC	1 cut(s)	754
BshNI	GGYRCC	1 cut(s)	730
BsiHKCI	CYCGRG	3 cut(s)	55, 116, 966
BsiSI	CCGG	1 cut(s)	93
BslFI	GGGAC	3 cut(s)	158, 194, 693
BslI	CCNNNNNNNGG	2 cut(s)	139, 610
BsmAI	GTCTC	3 cut(s)	84, 421, 819
BsmFI	GGGAC	3 cut(s)	158, 194, 693
BsmI	GAATGC	1 cut(s)	213
BsnI	GGCC	1 cut(s)	754
BsoBI	CYCGRG	3 cut(s)	55, 116, 966
Bsp1286I	GDGCHC	1 cut(s)	879
Bsp143I	GATC	5 cut(s)	190, 301, 331, 674, 851
Bsp19I	CCATGG	2 cut(s)	186, 742
Bsp68I	TCGCGA	1 cut(s)	195
BspACI	CCGC	3 cut(s)	31, 211, 468
BspANI	GGCC	1 cut(s)	754
BspCNI	CTCAG	4 cut(s)	88, 505, 875, 914
BspFNI	CGCG	1 cut(s)	195
BspLI	GGNNCC	1 cut(s)	732
BspMI	ACCTGC	1 cut(s)	376
BspPI	GGATC	2 cut(s)	198, 859
BspQI	GCTCTTC	2 cut(s)	117, 131
BspT107I	GGYRCC	1 cut(s)	730
BsrDI	GCAATG	3 cut(s)	417, 497, 960
BsrFI	RCCGGY	1 cut(s)	92
BssAI	RCCGGY	1 cut(s)	92
BssECI	CCNNGG	6 cut(s)	186, 696, 710, 742, 802, 940
BssMI	GATC	5 cut(s)	190, 301, 331, 674, 851
BssNI	GRCGYC	1 cut(s)	183
BssSI	CACGAG	1 cut(s)	335
BssT1I	CCWWGG	5 cut(s)	186, 696, 742, 802, 940
Bst2BI	CACGAG	1 cut(s)	335
Bst2UI	CCWGG	1 cut(s)	712
Bst6I	CTCTTC	6 cut(s)	15, 92, 117, 131, 444, 886
BstACI	GRCGYC	1 cut(s)	183
BstAPI	GCANNNNNTGC	1 cut(s)	233
BstC8I	GCNNGC	7 cut(s)	39, 72, 94, 211, 346, 594, 756
BstDEI	CTNAG	5 cut(s)	75, 513, 821, 862, 901
BstDSI	CCRYGG	2 cut(s)	186, 742
BstFNI	CGCG	1 cut(s)	195
BstH2I	RGCGCY	1 cut(s)	106
BstHHI	GCGC	2 cut(s)	70, 105
BstKTI	GATC	5 cut(s)	193, 304, 334, 677, 854
BstMAI	GTCTC	3 cut(s)	84, 421, 819
BstMBI	GATC	5 cut(s)	190, 301, 331, 674, 851
BstMWI	GCNNNNNNNGC	4 cut(s)	102, 233, 842, 962
BstNI	CCWGG	1 cut(s)	712
BstNSI	RCATGY	2 cut(s)	596, 836
BstSCI	CCNGG	1 cut(s)	710
BstUI	CGCG	1 cut(s)	195
BstV1I	GCAGC	3 cut(s)	17, 745, 823
BstV2I	GAAGAC	2 cut(s)	164, 551
BstX2I	RGATCY	1 cut(s)	331
BstXI	CCANNNNNNTGG	1 cut(s)	743
BstYI	RGATCY	1 cut(s)	331
BsuRI	GGCC	1 cut(s)	754
BtgI	CCRYGG	2 cut(s)	186, 742
BtsIMutI	CAGTG	1 cut(s)	306
BtuMI	TCGCGA	1 cut(s)	195
BveI	ACCTGC	1 cut(s)	376
Cac8I	GCNNGC	7 cut(s)	39, 72, 94, 211, 346, 594, 756
CaiI	CAGNNNCTG	1 cut(s)	869
CfoI	GCGC	2 cut(s)	70, 105
Cfr10I	RCCGGY	1 cut(s)	92
Cfr13I	GGNCC	1 cut(s)	752
CseI	GACGC	1 cut(s)	191
Csp6I	GTAC	1 cut(s)	731
CviAII	CATG	7 cut(s)	97, 187, 503, 593, 721, 743, 833
CviQI	GTAC	1 cut(s)	731
DdeI	CTNAG	5 cut(s)	75, 513, 821, 862, 901
DpnI	GATC	5 cut(s)	192, 303, 333, 676, 853
DpnII	GATC	5 cut(s)	190, 301, 331, 674, 851
Eam1104I	CTCTTC	6 cut(s)	15, 92, 117, 131, 444, 886
EarI	CTCTTC	6 cut(s)	15, 92, 117, 131, 444, 886
Eco130I	CCWWGG	5 cut(s)	186, 696, 742, 802, 940
Eco24I	GRGCYC	1 cut(s)	879
Eco47III	AGCGCT	1 cut(s)	104
Eco88I	CYCGRG	3 cut(s)	55, 116, 966
EcoRI	GAATTC	1 cut(s)	945
EcoRII	CCWGG	1 cut(s)	710
EcoT14I	CCWWGG	5 cut(s)	186, 696, 742, 802, 940
EcoT38I	GRGCYC	1 cut(s)	879
ErhI	CCWWGG	5 cut(s)	186, 696, 742, 802, 940
FaeI	CATG	7 cut(s)	100, 190, 506, 596, 724, 746, 836
FaqI	GGGAC	3 cut(s)	158, 194, 693
FatI	CATG	7 cut(s)	96, 186, 502, 592, 720, 742, 832
FauI	CCCGC	2 cut(s)	218, 475
Fnu4HI	GCNGC	3 cut(s)	6, 759, 837
FriOI	GRGCYC	1 cut(s)	879
Fsp4HI	GCNGC	3 cut(s)	6, 759, 837
FspBI	CTAG	2 cut(s)	662, 803
GlaI	GCGC	2 cut(s)	69, 104
GluI	GCNGC	3 cut(s)	6, 759, 837
GsaI	CCCAGC	2 cut(s)	143, 739
GsuI	CTGGAG	1 cut(s)	539
HaeII	RGCGCY	1 cut(s)	106
HaeIII	GGCC	1 cut(s)	754
HapII	CCGG	1 cut(s)	93
HgaI	GACGC	1 cut(s)	191
HhaI	GCGC	2 cut(s)	70, 105
Hin1I	GRCGYC	1 cut(s)	183
Hin1II	CATG	7 cut(s)	100, 190, 506, 596, 724, 746, 836
Hin6I	GCGC	2 cut(s)	68, 103
HinP1I	GCGC	2 cut(s)	68, 103
HincII	GTYRAC	1 cut(s)	921
HindII	GTYRAC	1 cut(s)	921
HindIII	AAGCTT	1 cut(s)	527
HinfI	GANTC	8 cut(s)	413, 481, 629, 653, 817, 827, 860, 911
HpaII	CCGG	1 cut(s)	93
HphI	GGTGA	2 cut(s)	144, 884
Hpy166II	GTNNAC	2 cut(s)	644, 921
Hpy188I	TCNGA	6 cut(s)	134, 448, 480, 514, 859, 904
Hpy188III	TCNNGA	7 cut(s)	116, 194, 365, 633, 662, 935, 968
Hpy8I	GTNNAC	2 cut(s)	644, 921
Hpy99I	CGWCG	1 cut(s)	200
HpyCH4IV	ACGT	1 cut(s)	706
HpyCH4V	TGCA	5 cut(s)	422, 456, 502, 620, 671
HpyF10VI	GCNNNNNNNGC	4 cut(s)	102, 233, 842, 962
HpyF3I	CTNAG	5 cut(s)	75, 513, 821, 862, 901
HpySE526I	ACGT	1 cut(s)	706
Hsp92I	GRCGYC	1 cut(s)	183
Hsp92II	CATG	7 cut(s)	100, 190, 506, 596, 724, 746, 836
HspAI	GCGC	2 cut(s)	68, 103
KpnI	GGTACC	1 cut(s)	734
KroI	GCCGGC	1 cut(s)	92
KroNI	GCCGGC	1 cut(s)	94
Kzo9I	GATC	5 cut(s)	190, 301, 331, 674, 851
LguI	GCTCTTC	2 cut(s)	117, 131
LmnI	GCTCC	3 cut(s)	100, 520, 744
Lsp1109I	GCAGC	3 cut(s)	17, 745, 823
LweI	GCATC	2 cut(s)	593, 777
MaeI	CTAG	2 cut(s)	662, 803
MaeII	ACGT	1 cut(s)	706
MaeIII	GTNAC	3 cut(s)	150, 886, 935
MalI	GATC	5 cut(s)	192, 303, 333, 676, 853
MboI	GATC	5 cut(s)	190, 301, 331, 674, 851
MfeI	CAATTG	1 cut(s)	261
MflI	RGATCY	1 cut(s)	331
MhlI	GDGCHC	1 cut(s)	879
MluCI	AATT	5 cut(s)	261, 324, 408, 458, 945
MlyI	GAGTC	2 cut(s)	821, 854
MmeI	TCCRAC	2 cut(s)	753, 829
MroNI	GCCGGC	1 cut(s)	92
MroXI	GAANNNNTTC	2 cut(s)	276, 315
MseI	TTAA	2 cut(s)	323, 929
MslI	CAYNNNNRTG	1 cut(s)	311
MspA1I	CMGCKG	3 cut(s)	31, 470, 758
MspI	CCGG	1 cut(s)	93
MspR9I	CCNGG	1 cut(s)	712
MunI	CAATTG	1 cut(s)	261
Mva1269I	GAATGC	1 cut(s)	213
MvaI	CCWGG	1 cut(s)	712
MvnI	CGCG	1 cut(s)	195
MwoI	GCNNNNNNNGC	4 cut(s)	102, 233, 842, 962
NaeI	GCCGGC	1 cut(s)	94
NcoI	CCATGG	2 cut(s)	186, 742
NdeII	GATC	5 cut(s)	190, 301, 331, 674, 851
NgoMIV	GCCGGC	1 cut(s)	92
NlaIII	CATG	7 cut(s)	100, 190, 506, 596, 724, 746, 836
NlaIV	GGNNCC	1 cut(s)	732
NmeAIII	GCCGAG	1 cut(s)	932
NmuCI	GTSAC	3 cut(s)	150, 886, 935
NruI	TCGCGA	1 cut(s)	195
NspI	RCATGY	2 cut(s)	596, 836
PaeI	GCATGC	1 cut(s)	596
PaeR7I	CTCGAG	2 cut(s)	116, 966
PciSI	GCTCTTC	2 cut(s)	117, 131
PctI	GAATGC	1 cut(s)	213
PdiI	GCCGGC	1 cut(s)	94
PdmI	GAANNNNTTC	2 cut(s)	276, 315
PfeI	GAWTC	6 cut(s)	413, 481, 629, 653, 817, 911
PkrI	GCNGC	3 cut(s)	7, 760, 838
PleI	GAGTC	2 cut(s)	821, 854
PpsI	GAGTC	2 cut(s)	821, 854
Psp6I	CCWGG	1 cut(s)	710
PspFI	CCCAGC	2 cut(s)	139, 735
PspGI	CCWGG	1 cut(s)	710
PspN4I	GGNNCC	1 cut(s)	732
PspPI	GGNCC	1 cut(s)	752
PstNI	CAGNNNCTG	1 cut(s)	869
PsuI	RGATCY	1 cut(s)	331
PvuII	CAGCTG	1 cut(s)	758
RruI	TCGCGA	1 cut(s)	195
RsaI	GTAC	1 cut(s)	732
RsaNI	GTAC	1 cut(s)	731
RseI	CAYNNNNRTG	1 cut(s)	311
SapI	GCTCTTC	2 cut(s)	117, 131
SaqAI	TTAA	2 cut(s)	323, 929
SatI	GCNGC	3 cut(s)	6, 759, 837
Sau3AI	GATC	5 cut(s)	190, 301, 331, 674, 851
Sau96I	GGNCC	1 cut(s)	752
SchI	GAGTC	2 cut(s)	821, 854
ScrFI	CCNGG	1 cut(s)	712
SduI	GDGCHC	1 cut(s)	879
SfaNI	GCATC	2 cut(s)	593, 777
Sfr274I	CTCGAG	2 cut(s)	116, 966
SlaI	CTCGAG	2 cut(s)	116, 966
SmiMI	CAYNNNNRTG	1 cut(s)	311
SmlI	CTYRAG	4 cut(s)	116, 553, 811, 966
SmoI	CTYRAG	4 cut(s)	116, 553, 811, 966
SphI	GCATGC	1 cut(s)	596
Sse9I	AATT	5 cut(s)	261, 324, 408, 458, 945
SsiI	CCGC	3 cut(s)	31, 211, 468
SspI	AATATT	2 cut(s)	221, 441
SspMI	CTAG	2 cut(s)	662, 803
StyD4I	CCNGG	1 cut(s)	710
StyI	CCWWGG	5 cut(s)	186, 696, 742, 802, 940
TaiI	ACGT	1 cut(s)	709
TaqI	TCGA	2 cut(s)	117, 967
TasI	AATT	5 cut(s)	261, 324, 408, 458, 945
TfiI	GAWTC	6 cut(s)	413, 481, 629, 653, 817, 911
Tru1I	TTAA	2 cut(s)	323, 929
Tru9I	TTAA	2 cut(s)	323, 929
TscAI	CASTG	1 cut(s)	313
TseFI	GTSAC	3 cut(s)	150, 886, 935
TseI	GCWGC	3 cut(s)	5, 758, 836
Tsp45I	GTSAC	3 cut(s)	150, 886, 935
TspDTI	ATGAA	1 cut(s)	312
TspRI	CASTG	1 cut(s)	313
XapI	RAATTY	1 cut(s)	945
XbaI	TCTAGA	1 cut(s)	661
XceI	RCATGY	2 cut(s)	596, 836
XcmI	CCANNNNNNNNNTGG	1 cut(s)	769
XhoI	CTCGAG	2 cut(s)	116, 966
XmaJI	CCTAGG	1 cut(s)	802
XmnI	GAANNNNTTC	2 cut(s)	276, 315
XspI	CTAG	2 cut(s)	662, 803

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.