Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0013416

Physical Location & Seq

Genomic Coordinates Reverse (-)

11824440 .. 11830316

Gene Structure 5877 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1104400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGTCTTCTCCACCAGTACCAGTCATTTTCTTCTTCTTCTTCTTCTTCACCATCACTCTCATCCCACTAACCCACTCTGTTCCTTTCGTTGTTTTTCATGGAATCAGTGATAAATGCAGCAACCGAGGAGTCGCACTGTTTACTGAGCTCTTAAGCAACTGGTCAGGTTCTCAAGGACATTGCATAGAAATTGGGGATGGATCGTGGGATTCCTGGACAATGCCCTTATCGGAACAGACGGCCATTGCTTGTGAGAAGGTGAAAAATATGAGTGAGTTAAGTGACGGTTACAACATGGTTGGACTTTCTCAGGGTAACGTGATTGGACGAGGAGTAATTCAATTTTGTGACGGAGCACCTCCTGTGAAAAATCTCATATCGCTAGCAGGTCCTCATGCTGGTACCGCTTCTATTCCATTTTGTAAATGCGAATGGATTTGCGTTCTTCTGGATGACTTAATCCAGTCAGAGATCTACAGCGACTTTATCCAGGAACATTTGGCTCCAAGTGGTTATCTTAAAATCCCGACAGACATCGATGGCTATTTAAAAGGGTGTAGGTTCCTTCCAAAGTTGAATAATGAAATCAAAGCGTCGAGAAATTCCACTTATAAGGAACGGTTTGCTAGCTTAGAGAACTTAGTCTTGATTATGTTTGAGCAAGACACTGTACTGATACCCAAGGAGACCTCATGGTTTGGATATTTCCCAGACGGGGCCTTTGATCCTATTTTGCCTGCGCAAGAGACCATGTTGTACACTGAAGACTGGATTGGTTTGAAAACCTTGGACGAAGCTGGAAAAGTTAAGTTCATAAATGTGTCGGGGGGCCATCTGCAGATCTCTCGAAGCGACATGAAAACGTACATTGTGCCATACTTGGAAGACGAAGACTCAACGCAGCACAAGATAGCAGAGCCTTCATTTCCAACAACACTTTCGTTAATCTGGAACAACTACTTGGATCTTGTTGGACTCGGTGAGCATCAGAAGGTGGTGCTGAGGGTCGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000323 GO:0002084 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0006464 GO:0006807 GO:0006810 GO:0006897 GO:0006898 GO:0006996 GO:0007005 GO:0007275 GO:0007610 GO:0008150 GO:0008152 GO:0008474 GO:0009056 GO:0009057 GO:0009791 GO:0009987 GO:0016043 GO:0016192 GO:0016787 GO:0016788 GO:0016790 GO:0018991 GO:0019098 GO:0019538 GO:0022414 GO:0030163 GO:0032501 GO:0032502 GO:0032504 GO:0035601 GO:0036211 GO:0042157 GO:0042159 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048609 GO:0048856 GO:0051179 GO:0051234 GO:0071704 GO:0071840 GO:0098599 GO:0098657 GO:0098732 GO:0098734 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00062 ko01100 ko01212 ko04142 map00062 map01100 map01212 map04142

Pfam Domains

Protein Families

Palm_thioest

Protein Analysis

338

Amino Acids

37.61

Weight (kDa)

4.9

Isoelectric Point (pI)

38.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Palm_thioest	PF02089	28 - 278	1.7e-76	Palmitoyl protein thioesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013416)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60340 AT3G60340
fragaria_vesca	FvH4_7g09920
malus_domestica	MD07G1104400.v1.1
prunus_persica	Prupe.2G128000_v2.0.a1 Prupe.2G128000_v2.0.a1
pyrus_communis	pycom07g08940
rosa_chinensis	RchiOBHm_Chr1g0347441
rosa_laevigata	RLG00000028747
rosa_multiflora	Rmu_sc0009756.1_g000009
rosa_roxburghii	Rroxscaffold_4G00307770
rosa_rugosa	Rorug01G0186900 Rorug01G0187000
rosa_samantha	Rh1AG204400 Rh1BG170100 Rh1CG189500 Rh1DG200500
rosa_wichuraiana	Rw1G017150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	612
Acc16I	TGCGCA	1 cut(s)	741
Acc36I	ACCTGC	1 cut(s)	377
Acc65I	GGTACC	1 cut(s)	401
AccB1I	GGYRCC	1 cut(s)	401
AciI	CCGC	1 cut(s)	405
AclWI	GGATC	3 cut(s)	208, 719, 972
AcoI	YGGCCR	1 cut(s)	240
AcsI	RAATTY	1 cut(s)	601
AcuI	CTGAAG	1 cut(s)	783
AfaI	GTAC	5 cut(s)	18, 403, 672, 758, 866
AfiI	CCNNNNNNNGG	2 cut(s)	398, 715
AflII	CTTAAG	1 cut(s)	151
AgsI	TTSAA	3 cut(s)	341, 577, 781
AjnI	CCWGG	2 cut(s)	212, 489
AjuI	GAANNNNNNNTTGG	6 cut(s)	756, 788, 922, 944, 954, 976
AluBI	AGCT	3 cut(s)	148, 630, 797
AluI	AGCT	3 cut(s)	148, 630, 797
Alw21I	GWGCWC	2 cut(s)	150, 358
Alw26I	GTCTC	2 cut(s)	680, 740
AlwI	GGATC	3 cut(s)	208, 719, 972
AoxI	GGCC	3 cut(s)	240, 717, 829
ApeKI	GCWGC	2 cut(s)	117, 901
ApoI	RAATTY	1 cut(s)	601
ArsI	GACNNNNNNTTYG	2 cut(s)	704, 736
Asp718I	GGTACC	1 cut(s)	401
AspLEI	GCGC	1 cut(s)	742
AspS9I	GGNCC	3 cut(s)	389, 717, 829
AsuHPI	GGTGA	3 cut(s)	40, 271, 992
AsuNHI	GCTAGC	2 cut(s)	382, 626
AvaII	GGWCC	1 cut(s)	389
BanI	GGYRCC	1 cut(s)	401
BanII	GRGCYC	1 cut(s)	150
BbsI	GAAGAC	3 cut(s)	771, 891, 897
Bbv12I	GWGCWC	2 cut(s)	150, 358
BbvCI	CCTCAGC	1 cut(s)	1001
BbvI	GCAGC	2 cut(s)	129, 913
BccI	CCATC	4 cut(s)	59, 191, 533, 840
BceAI	ACGGC	1 cut(s)	255
BcgI	CGANNNNNNTGC	2 cut(s)	827, 861
BciT130I	CCWGG	2 cut(s)	214, 491
BcoDI	GTCTC	2 cut(s)	680, 740
BfaI	CTAG	2 cut(s)	383, 627
BfmI	CTRYAG	2 cut(s)	475, 836
BfrI	CTTAAG	1 cut(s)	151
BfuAI	ACCTGC	1 cut(s)	377
BglII	AGATCT	2 cut(s)	471, 840
BisI	GCNGC	2 cut(s)	118, 902
BlsI	GCNGC	2 cut(s)	119, 903
Bme1390I	CCNGG	2 cut(s)	214, 491
Bme18I	GGWCC	1 cut(s)	389
BmgT120I	GGNCC	3 cut(s)	389, 717, 829
BmiI	GGNNCC	5 cut(s)	403, 504, 563, 718, 830
BmrFI	CCNGG	2 cut(s)	214, 491
BmsI	GCATC	1 cut(s)	994
BmtI	GCTAGC	2 cut(s)	386, 630
BpiI	GAAGAC	3 cut(s)	771, 891, 897
Bpu10I	CCTNAGC	1 cut(s)	1001
BpuEI	CTTGAG	1 cut(s)	156
Bsa29I	ATCGAT	1 cut(s)	537
BsaI	GGTCTC	2 cut(s)	680, 740
BsaJI	CCNNGG	3 cut(s)	124, 681, 786
Bsc4I	CCNNNNNNNGG	2 cut(s)	398, 715
Bse1I	ACTGG	5 cut(s)	14, 20, 164, 463, 773
Bse3DI	GCAATG	2 cut(s)	178, 243
BseBI	CCWGG	2 cut(s)	214, 491
BseCI	ATCGAT	1 cut(s)	537
BseDI	CCNNGG	3 cut(s)	124, 681, 786
BseGI	GGATG	3 cut(s)	60, 202, 457
BseLI	CCNNNNNNNGG	2 cut(s)	398, 715
BseMI	GCAATG	2 cut(s)	178, 243
BseMII	CTCAG	3 cut(s)	135, 323, 992
BseNI	ACTGG	5 cut(s)	14, 20, 164, 463, 773
BseRI	GAGGAG	2 cut(s)	141, 345
BseXI	GCAGC	2 cut(s)	129, 913
BshFI	GGCC	3 cut(s)	242, 719, 831
BshNI	GGYRCC	1 cut(s)	401
BshVI	ATCGAT	1 cut(s)	537
BsiHKAI	GWGCWC	2 cut(s)	150, 358
BslI	CCNNNNNNNGG	2 cut(s)	398, 715
BsmAI	GTCTC	2 cut(s)	680, 740
BsnI	GGCC	3 cut(s)	242, 719, 831
Bso31I	GGTCTC	2 cut(s)	680, 740
Bsp1286I	GDGCHC	2 cut(s)	150, 358
Bsp1407I	TGTACA	1 cut(s)	756
Bsp143I	GATC	5 cut(s)	200, 471, 724, 840, 964
BspACI	CCGC	1 cut(s)	405
BspANI	GGCC	3 cut(s)	242, 719, 831
BspCNI	CTCAG	3 cut(s)	136, 322, 993
BspDI	ATCGAT	1 cut(s)	537
BspLI	GGNNCC	5 cut(s)	403, 504, 563, 718, 830
BspMAI	CTGCAG	1 cut(s)	840
BspMI	ACCTGC	1 cut(s)	377
BspOI	GCTAGC	2 cut(s)	386, 630
BspPI	GGATC	3 cut(s)	208, 719, 972
BspT107I	GGYRCC	1 cut(s)	401
BspTI	CTTAAG	1 cut(s)	151
BspTNI	GGTCTC	2 cut(s)	680, 740
BsrDI	GCAATG	2 cut(s)	178, 243
BsrGI	TGTACA	1 cut(s)	756
BsrI	ACTGG	5 cut(s)	14, 20, 164, 463, 773
BssECI	CCNNGG	3 cut(s)	124, 681, 786
BssMI	GATC	5 cut(s)	200, 471, 724, 840, 964
BssT1I	CCWWGG	2 cut(s)	681, 786
Bst2UI	CCWGG	2 cut(s)	214, 491
Bst4CI	ACNGT	4 cut(s)	138, 287, 621, 670
BstAFI	CTTAAG	1 cut(s)	151
BstAUI	TGTACA	1 cut(s)	756
BstC8I	GCNNGC	3 cut(s)	384, 628, 738
BstDEI	CTNAG	5 cut(s)	144, 309, 631, 640, 1001
BstF5I	GGATG	3 cut(s)	60, 202, 457
BstHHI	GCGC	1 cut(s)	742
BstKTI	GATC	5 cut(s)	203, 474, 727, 843, 967
BstMAI	GTCTC	2 cut(s)	680, 740
BstMBI	GATC	5 cut(s)	200, 471, 724, 840, 964
BstMWI	GCNNNNNNNGC	1 cut(s)	404
BstNI	CCWGG	2 cut(s)	214, 491
BstSCI	CCNGG	2 cut(s)	212, 489
BstSFI	CTRYAG	2 cut(s)	475, 836
BstV1I	GCAGC	2 cut(s)	129, 913
BstV2I	GAAGAC	3 cut(s)	771, 891, 897
BstX2I	RGATCY	3 cut(s)	471, 840, 964
BstYI	RGATCY	3 cut(s)	471, 840, 964
Bsu15I	ATCGAT	1 cut(s)	537
BsuRI	GGCC	3 cut(s)	242, 719, 831
BsuTUI	ATCGAT	1 cut(s)	537
BtsCI	GGATG	3 cut(s)	60, 202, 457
BtsIMutI	CAGTG	4 cut(s)	112, 134, 666, 759
BveI	ACCTGC	1 cut(s)	377
Cac8I	GCNNGC	3 cut(s)	384, 628, 738
CfoI	GCGC	1 cut(s)	742
Cfr13I	GGNCC	3 cut(s)	389, 717, 829
ClaI	ATCGAT	1 cut(s)	537
CseI	GACGC	1 cut(s)	582
Csp6I	GTAC	5 cut(s)	17, 402, 671, 757, 865
CviAII	CATG	6 cut(s)	98, 295, 395, 693, 751, 856
CviJI	RGCY	9 cut(s)	148, 242, 503, 543, 630, 719, 797, 831, 919
CviKI_1	RGCY	9 cut(s)	148, 242, 503, 543, 630, 719, 797, 831, 919
CviQI	GTAC	5 cut(s)	17, 402, 671, 757, 865
DdeI	CTNAG	5 cut(s)	144, 309, 631, 640, 1001
DpnI	GATC	5 cut(s)	202, 473, 726, 842, 966
DpnII	GATC	5 cut(s)	200, 471, 724, 840, 964
DraI	TTTAAA	1 cut(s)	549
EaeI	YGGCCR	1 cut(s)	240
Ecl136II	GAGCTC	1 cut(s)	148
Eco130I	CCWWGG	2 cut(s)	681, 786
Eco24I	GRGCYC	1 cut(s)	150
Eco31I	GGTCTC	2 cut(s)	680, 740
Eco47I	GGWCC	1 cut(s)	389
Eco53kI	GAGCTC	1 cut(s)	148
Eco57I	CTGAAG	1 cut(s)	783
EcoICRI	GAGCTC	1 cut(s)	148
EcoO109I	RGGNCCY	2 cut(s)	389, 717
EcoRII	CCWGG	2 cut(s)	212, 489
EcoT14I	CCWWGG	2 cut(s)	681, 786
EcoT38I	GRGCYC	1 cut(s)	150
ErhI	CCWWGG	2 cut(s)	681, 786
FaeI	CATG	6 cut(s)	101, 298, 398, 696, 754, 859
FatI	CATG	6 cut(s)	97, 294, 394, 692, 750, 855
Fnu4HI	GCNGC	2 cut(s)	118, 902
FokI	GGATG	3 cut(s)	47, 209, 464
FriOI	GRGCYC	1 cut(s)	150
Fsp4HI	GCNGC	2 cut(s)	118, 902
FspBI	CTAG	2 cut(s)	383, 627
FspI	TGCGCA	1 cut(s)	741
GlaI	GCGC	1 cut(s)	741
GluI	GCNGC	2 cut(s)	118, 902
HaeIII	GGCC	3 cut(s)	242, 719, 831
HgaI	GACGC	1 cut(s)	582
HhaI	GCGC	1 cut(s)	742
Hin1II	CATG	6 cut(s)	101, 298, 398, 696, 754, 859
Hin6I	GCGC	1 cut(s)	740
HinP1I	GCGC	1 cut(s)	740
HinfI	GANTC	5 cut(s)	102, 129, 209, 893, 975
HphI	GGTGA	3 cut(s)	40, 271, 992
Hpy166II	GTNNAC	2 cut(s)	141, 759
Hpy188I	TCNGA	3 cut(s)	232, 469, 990
Hpy188III	TCNNGA	6 cut(s)	449, 526, 597, 646, 846, 949
Hpy8I	GTNNAC	2 cut(s)	141, 759
Hpy99I	CGWCG	1 cut(s)	598
HpyAV	CCTTC	4 cut(s)	250, 575, 930, 985
HpyCH4III	ACNGT	4 cut(s)	138, 287, 621, 670
HpyCH4IV	ACGT	2 cut(s)	318, 863
HpyCH4V	TGCA	3 cut(s)	117, 183, 838
HpyF10VI	GCNNNNNNNGC	1 cut(s)	404
HpyF3I	CTNAG	5 cut(s)	144, 309, 631, 640, 1001
HpySE526I	ACGT	2 cut(s)	318, 863
Hsp92II	CATG	6 cut(s)	101, 298, 398, 696, 754, 859
HspAI	GCGC	1 cut(s)	740
KpnI	GGTACC	1 cut(s)	405
Kzo9I	GATC	5 cut(s)	200, 471, 724, 840, 964
LmnI	GCTCC	2 cut(s)	353, 508
Lsp1109I	GCAGC	2 cut(s)	129, 913
LweI	GCATC	1 cut(s)	994
MaeI	CTAG	2 cut(s)	383, 627
MaeII	ACGT	2 cut(s)	318, 863
MaeIII	GTNAC	4 cut(s)	281, 287, 314, 347
MalI	GATC	5 cut(s)	202, 473, 726, 842, 966
MboI	GATC	5 cut(s)	200, 471, 724, 840, 964
MflI	RGATCY	3 cut(s)	471, 840, 964
MhlI	GDGCHC	2 cut(s)	150, 358
MluCI	AATT	4 cut(s)	189, 336, 341, 601
MlyI	GAGTC	3 cut(s)	138, 887, 969
MmeI	TCCRAC	3 cut(s)	280, 952, 953
MnlI	CCTC	6 cut(s)	119, 323, 369, 402, 700, 996
MseI	TTAA	7 cut(s)	152, 278, 458, 519, 548, 807, 944
MslI	CAYNNNNRTG	1 cut(s)	818
MspCI	CTTAAG	1 cut(s)	151
MspR9I	CCNGG	2 cut(s)	214, 491
MvaI	CCWGG	2 cut(s)	214, 491
MwoI	GCNNNNNNNGC	1 cut(s)	404
NdeII	GATC	5 cut(s)	200, 471, 724, 840, 964
NheI	GCTAGC	2 cut(s)	382, 626
NlaIII	CATG	6 cut(s)	101, 298, 398, 696, 754, 859
NlaIV	GGNNCC	5 cut(s)	403, 504, 563, 718, 830
NmuCI	GTSAC	2 cut(s)	281, 347
NsbI	TGCGCA	1 cut(s)	741
PfeI	GAWTC	2 cut(s)	102, 209
PfoI	TCCNGGA	2 cut(s)	212, 489
PkrI	GCNGC	2 cut(s)	119, 903
PleI	GAGTC	3 cut(s)	137, 887, 969
PpsI	GAGTC	3 cut(s)	137, 887, 969
PpuMI	RGGWCCY	1 cut(s)	389
PsiI	TTATAA	1 cut(s)	612
Psp124BI	GAGCTC	1 cut(s)	150
Psp5II	RGGWCCY	1 cut(s)	389
Psp6I	CCWGG	2 cut(s)	212, 489
PspGI	CCWGG	2 cut(s)	212, 489
PspN4I	GGNNCC	5 cut(s)	403, 504, 563, 718, 830
PspPI	GGNCC	3 cut(s)	389, 717, 829
PspPPI	RGGWCCY	1 cut(s)	389
PstI	CTGCAG	1 cut(s)	840
PsuI	RGATCY	3 cut(s)	471, 840, 964
RsaI	GTAC	5 cut(s)	18, 403, 672, 758, 866
RsaNI	GTAC	5 cut(s)	17, 402, 671, 757, 865
RseI	CAYNNNNRTG	1 cut(s)	818
SacI	GAGCTC	1 cut(s)	150
SaqAI	TTAA	7 cut(s)	152, 278, 458, 519, 548, 807, 944
SatI	GCNGC	2 cut(s)	118, 902
Sau3AI	GATC	5 cut(s)	200, 471, 724, 840, 964
Sau96I	GGNCC	3 cut(s)	389, 717, 829
SchI	GAGTC	3 cut(s)	138, 887, 969
ScrFI	CCNGG	2 cut(s)	214, 491
SduI	GDGCHC	2 cut(s)	150, 358
SfaNI	GCATC	1 cut(s)	994
SfcI	CTRYAG	2 cut(s)	475, 836
SinI	GGWCC	1 cut(s)	389
SmiMI	CAYNNNNRTG	1 cut(s)	818
SmlI	CTYRAG	2 cut(s)	151, 171
SmoI	CTYRAG	2 cut(s)	151, 171
Sse9I	AATT	4 cut(s)	189, 336, 341, 601
SsiI	CCGC	1 cut(s)	405
SspMI	CTAG	2 cut(s)	383, 627
SstI	GAGCTC	1 cut(s)	150
StyD4I	CCNGG	2 cut(s)	212, 489
StyI	CCWWGG	2 cut(s)	681, 786
TaaI	ACNGT	4 cut(s)	138, 287, 621, 670
TaiI	ACGT	2 cut(s)	321, 866
TaqI	TCGA	3 cut(s)	537, 596, 847
TasI	AATT	4 cut(s)	189, 336, 341, 601
TatI	WGTACW	2 cut(s)	670, 756
TfiI	GAWTC	2 cut(s)	102, 209
Tru1I	TTAA	7 cut(s)	152, 278, 458, 519, 548, 807, 944
Tru9I	TTAA	7 cut(s)	152, 278, 458, 519, 548, 807, 944
TscAI	CASTG	4 cut(s)	112, 141, 673, 766
TseFI	GTSAC	2 cut(s)	281, 347
TseI	GCWGC	2 cut(s)	117, 901
Tsp45I	GTSAC	2 cut(s)	281, 347
TspDTI	ATGAA	5 cut(s)	86, 597, 802, 872, 912
TspGWI	ACGGA	1 cut(s)	366
TspRI	CASTG	4 cut(s)	112, 141, 673, 766
Vha464I	CTTAAG	1 cut(s)	151
VpaK11BI	GGWCC	1 cut(s)	389
XapI	RAATTY	1 cut(s)	601
XspI	CTAG	2 cut(s)	383, 627

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.