Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009756.1

Orthogroup ID

OG0013416

Physical Location & Seq

Genomic Coordinates Reverse (-)

40675 .. 45695

Gene Structure 5021 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009756.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

atggcttttccactgttaccaatcattttcatcttcttcttcaccatcactctcatcccacttacattctctgttcctttcatcgtttttcatggcattggagataaatgcagcaatcaaggagtcacacgctttacggagctcttaagcaaatggtctggttctcaaggatattgcgtagaaattggggatggatcatgggattcctggacaatgcctttactggaacagacagctattgcttgtgagaaggttaaaactatgagtgaattaagtgacggttacaacatagttggactttctcagggtaacatggttggtagaggagtagttgaattttgtgatggtggacctcctgtcagaaattttgtatcactagcaggtccccatgccggtaccgcttctattccattttgtggatccgagtggctttgtgttcttctggatgacttaatcaagtcagagatctacagcagctttatccaggaacatttggctccaagtggttatgttaaaatccctactgatattgctgcctatctaaaagggtgtacatttcttccaaagctgaacaatgaaatcaattttacgagaaattccacatataaggaacgatttgcaagcttagagaatttggtgcttattatgtttgagcaagacaccatattgatacccaaggagacctcctggtttggatatttcccagatggggcctatgatcctatattgcctgcacaagagactgagctgtacattgaagactggattggtttgaaaactttggacgaagctggtaaagtcaagttcataaacgtgtcaggtaatcatctggccatcacgagaagtgacatgaaaaagtatgttgtgccatacttggaagatggaacatcaatgcaaacgatgatagcagagccctcatcacagaaattactttcatcagcttggaacttcctcttggaatttgctgggctcaaaaaagaggatccacaattggtgccgaccgtggtgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000323 GO:0002084 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0006464 GO:0006807 GO:0006810 GO:0006897 GO:0006898 GO:0006996 GO:0007005 GO:0007275 GO:0007610 GO:0008150 GO:0008152 GO:0008474 GO:0009056 GO:0009057 GO:0009791 GO:0009987 GO:0016043 GO:0016192 GO:0016787 GO:0016788 GO:0016790 GO:0018991 GO:0019098 GO:0019538 GO:0022414 GO:0030163 GO:0032501 GO:0032502 GO:0032504 GO:0035601 GO:0036211 GO:0042157 GO:0042159 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048609 GO:0048856 GO:0051179 GO:0051234 GO:0071704 GO:0071840 GO:0098599 GO:0098657 GO:0098732 GO:0098734 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00062 ko01100 ko01212 ko04142 map00062 map01100 map01212 map04142

Pfam Domains

Protein Families

Palm_thioest

Protein Analysis

336

Amino Acids

37.34

Weight (kDa)

4.74

Isoelectric Point (pI)

35.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013416)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60340 AT3G60340
fragaria_vesca	FvH4_7g09920
malus_domestica	MD07G1104400.v1.1
prunus_persica	Prupe.2G128000_v2.0.a1 Prupe.2G128000_v2.0.a1
pyrus_communis	pycom07g08940
rosa_chinensis	RchiOBHm_Chr1g0347441
rosa_laevigata	RLG00000028747
rosa_multiflora	Rmu_sc0009756.1_g000009
rosa_roxburghii	Rroxscaffold_4G00307770
rosa_rugosa	Rorug01G0186900 Rorug01G0187000
rosa_samantha	Rh1AG204400 Rh1BG170100 Rh1CG189500 Rh1DG200500
rosa_wichuraiana	Rw1G017150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	371
Acc65I	GGTACC	1 cut(s)	395
AccB1I	GGYRCC	2 cut(s)	395, 994
AccB7I	CCANNNNNTGG	1 cut(s)	416
AciI	CCGC	1 cut(s)	399
AclWI	GGATC	6 cut(s)	202, 414, 427, 713, 977, 990
AcoI	YGGCCR	1 cut(s)	831
AcsI	RAATTY	5 cut(s)	335, 364, 595, 631, 959
AfaI	GTAC	3 cut(s)	397, 553, 752
AfiI	CCNNNNNNNGG	3 cut(s)	392, 416, 709
AflII	CTTAAG	1 cut(s)	145
AflIII	ACRYGT	1 cut(s)	813
AgsI	TTSAA	3 cut(s)	335, 758, 775
AhdI	GACNNNNNGTC	1 cut(s)	356
AjnI	CCWGG	3 cut(s)	206, 483, 686
AjuI	GAANNNNNNNTTGG	4 cut(s)	750, 782, 938, 970
AluBI	AGCT	8 cut(s)	142, 236, 477, 568, 624, 748, 791, 941
AluI	AGCT	8 cut(s)	142, 236, 477, 568, 624, 748, 791, 941
Alw21I	GWGCWC	1 cut(s)	144
Alw26I	GTCTC	2 cut(s)	674, 734
AlwI	GGATC	6 cut(s)	202, 414, 427, 713, 977, 990
AoxI	GGCC	2 cut(s)	711, 831
ApeKI	GCWGC	3 cut(s)	111, 474, 533
ApoI	RAATTY	5 cut(s)	335, 364, 595, 631, 959
Asp718I	GGTACC	1 cut(s)	395
AspS9I	GGNCC	3 cut(s)	350, 383, 711
AsuHPI	GGTGA	1 cut(s)	34
AvaII	GGWCC	2 cut(s)	350, 383
BalI	TGGCCA	1 cut(s)	833
BamHI	GGATCC	2 cut(s)	419, 982
BanI	GGYRCC	2 cut(s)	395, 994
BanII	GRGCYC	3 cut(s)	144, 915, 972
BauI	CACGAG	1 cut(s)	838
BbsI	GAAGAC	1 cut(s)	765
Bbv12I	GWGCWC	1 cut(s)	144
BbvI	GCAGC	3 cut(s)	123, 486, 520
BccI	CCATC	6 cut(s)	53, 185, 338, 701, 842, 875
BciT130I	CCWGG	3 cut(s)	208, 485, 688
BcoDI	GTCTC	2 cut(s)	674, 734
BfaI	CTAG	1 cut(s)	377
BfmI	CTRYAG	1 cut(s)	469
BfrI	CTTAAG	1 cut(s)	145
BfuAI	ACCTGC	1 cut(s)	371
BglII	AGATCT	1 cut(s)	465
BisI	GCNGC	3 cut(s)	112, 475, 534
BlsI	GCNGC	3 cut(s)	113, 476, 535
Bme1390I	CCNGG	3 cut(s)	208, 485, 688
Bme18I	GGWCC	2 cut(s)	350, 383
BmeRI	GACNNNNNGTC	1 cut(s)	356
BmgT120I	GGNCC	3 cut(s)	350, 383, 711
BmiI	GGNNCC	7 cut(s)	385, 397, 421, 498, 712, 984, 996
BmrFI	CCNGG	3 cut(s)	208, 485, 688
BpiI	GAAGAC	1 cut(s)	765
BpuEI	CTTGAG	1 cut(s)	150
BsaI	GGTCTC	1 cut(s)	674
BsaJI	CCNNGG	2 cut(s)	675, 1002
Bsc4I	CCNNNNNNNGG	3 cut(s)	392, 416, 709
Bse118I	RCCGGY	1 cut(s)	392
Bse1I	ACTGG	2 cut(s)	228, 767
BseBI	CCWGG	3 cut(s)	208, 485, 688
BseDI	CCNNGG	2 cut(s)	675, 1002
BseGI	GGATG	3 cut(s)	54, 196, 451
BseLI	CCNNNNNNNGG	3 cut(s)	392, 416, 709
BseMII	CTCAG	2 cut(s)	317, 735
BseNI	ACTGG	2 cut(s)	228, 767
BseRI	GAGGAG	1 cut(s)	339
BseXI	GCAGC	3 cut(s)	123, 486, 520
BseYI	CCCAGC	1 cut(s)	965
BsgI	GTGCAG	1 cut(s)	717
Bsh1285I	CGRYCG	1 cut(s)	1002
BshFI	GGCC	2 cut(s)	713, 833
BshNI	GGYRCC	2 cut(s)	395, 994
BsiEI	CGRYCG	1 cut(s)	1002
BsiHKAI	GWGCWC	1 cut(s)	144
BsiSI	CCGG	1 cut(s)	393
BslFI	GGGAC	1 cut(s)	369
BslI	CCNNNNNNNGG	3 cut(s)	392, 416, 709
BsmAI	GTCTC	2 cut(s)	674, 734
BsmFI	GGGAC	1 cut(s)	369
BsnI	GGCC	2 cut(s)	713, 833
Bso31I	GGTCTC	1 cut(s)	674
Bsp1286I	GDGCHC	3 cut(s)	144, 915, 972
Bsp1407I	TGTACA	2 cut(s)	551, 750
Bsp143I	GATC	5 cut(s)	194, 419, 465, 718, 982
BspACI	CCGC	1 cut(s)	399
BspANI	GGCC	2 cut(s)	713, 833
BspCNI	CTCAG	2 cut(s)	316, 736
BspLI	GGNNCC	7 cut(s)	385, 397, 421, 498, 712, 984, 996
BspMI	ACCTGC	1 cut(s)	371
BspPI	GGATC	6 cut(s)	202, 414, 427, 713, 977, 990
BspT107I	GGYRCC	2 cut(s)	395, 994
BspTI	CTTAAG	1 cut(s)	145
BspTNI	GGTCTC	1 cut(s)	674
BsrFI	RCCGGY	1 cut(s)	392
BsrGI	TGTACA	2 cut(s)	551, 750
BsrI	ACTGG	2 cut(s)	228, 767
BssAI	RCCGGY	1 cut(s)	392
BssECI	CCNNGG	2 cut(s)	675, 1002
BssMI	GATC	5 cut(s)	194, 419, 465, 718, 982
BssSI	CACGAG	1 cut(s)	838
BssT1I	CCWWGG	1 cut(s)	675
Bst2BI	CACGAG	1 cut(s)	838
Bst2UI	CCWGG	3 cut(s)	208, 485, 688
Bst4CI	ACNGT	3 cut(s)	15, 281, 1003
BstAFI	CTTAAG	1 cut(s)	145
BstAUI	TGTACA	2 cut(s)	551, 750
BstC8I	GCNNGC	2 cut(s)	622, 732
BstDEI	CTNAG	3 cut(s)	303, 625, 744
BstDSI	CCRYGG	1 cut(s)	1002
BstF5I	GGATG	3 cut(s)	54, 196, 451
BstKTI	GATC	5 cut(s)	197, 422, 468, 721, 985
BstMAI	GTCTC	2 cut(s)	674, 734
BstMBI	GATC	5 cut(s)	194, 419, 465, 718, 982
BstMCI	CGRYCG	1 cut(s)	1002
BstMWI	GCNNNNNNNGC	1 cut(s)	398
BstNI	CCWGG	3 cut(s)	208, 485, 688
BstSCI	CCNGG	3 cut(s)	206, 483, 686
BstSFI	CTRYAG	1 cut(s)	469
BstV1I	GCAGC	3 cut(s)	123, 486, 520
BstV2I	GAAGAC	1 cut(s)	765
BstX2I	RGATCY	3 cut(s)	419, 465, 982
BstYI	RGATCY	3 cut(s)	419, 465, 982
BsuRI	GGCC	2 cut(s)	713, 833
BtgI	CCRYGG	1 cut(s)	1002
BtsCI	GGATG	3 cut(s)	54, 196, 451
BtsIMutI	CAGTG	1 cut(s)	11
BveI	ACCTGC	1 cut(s)	371
Cac8I	GCNNGC	2 cut(s)	622, 732
Cfr10I	RCCGGY	1 cut(s)	392
Cfr13I	GGNCC	3 cut(s)	350, 383, 711
Csp6I	GTAC	3 cut(s)	396, 552, 751
CviAII	CATG	5 cut(s)	92, 198, 313, 389, 850
CviQI	GTAC	3 cut(s)	396, 552, 751
DdeI	CTNAG	3 cut(s)	303, 625, 744
DpnI	GATC	5 cut(s)	196, 421, 467, 720, 984
DpnII	GATC	5 cut(s)	194, 419, 465, 718, 982
DriI	GACNNNNNGTC	1 cut(s)	356
EaeI	YGGCCR	1 cut(s)	831
Eam1105I	GACNNNNNGTC	1 cut(s)	356
Ecl136II	GAGCTC	1 cut(s)	142
Eco130I	CCWWGG	1 cut(s)	675
Eco24I	GRGCYC	3 cut(s)	144, 915, 972
Eco31I	GGTCTC	1 cut(s)	674
Eco47I	GGWCC	2 cut(s)	350, 383
Eco53kI	GAGCTC	1 cut(s)	142
EcoICRI	GAGCTC	1 cut(s)	142
EcoO109I	RGGNCCY	2 cut(s)	383, 711
EcoRII	CCWGG	3 cut(s)	206, 483, 686
EcoT14I	CCWWGG	1 cut(s)	675
EcoT38I	GRGCYC	3 cut(s)	144, 915, 972
ErhI	CCWWGG	1 cut(s)	675
FaeI	CATG	5 cut(s)	95, 201, 316, 392, 853
FaqI	GGGAC	1 cut(s)	369
FatI	CATG	5 cut(s)	91, 197, 312, 388, 849
Fnu4HI	GCNGC	3 cut(s)	112, 475, 534
FokI	GGATG	3 cut(s)	41, 203, 458
FriOI	GRGCYC	3 cut(s)	144, 915, 972
Fsp4HI	GCNGC	3 cut(s)	112, 475, 534
FspBI	CTAG	1 cut(s)	377
GluI	GCNGC	3 cut(s)	112, 475, 534
GsaI	CCCAGC	1 cut(s)	969
HaeIII	GGCC	2 cut(s)	713, 833
HapII	CCGG	1 cut(s)	393
Hin1II	CATG	5 cut(s)	95, 201, 316, 392, 853
HindIII	AAGCTT	1 cut(s)	622
HinfI	GANTC	2 cut(s)	123, 203
HpaII	CCGG	1 cut(s)	393
HphI	GGTGA	1 cut(s)	34
Hpy166II	GTNNAC	2 cut(s)	350, 552
Hpy188I	TCNGA	3 cut(s)	362, 424, 463
Hpy188III	TCNNGA	2 cut(s)	443, 838
Hpy8I	GTNNAC	2 cut(s)	350, 552
HpyAV	CCTTC	1 cut(s)	244
HpyCH4III	ACNGT	3 cut(s)	15, 281, 1003
HpyCH4IV	ACGT	1 cut(s)	813
HpyCH4V	TGCA	4 cut(s)	111, 620, 734, 895
HpyF10VI	GCNNNNNNNGC	1 cut(s)	398
HpyF3I	CTNAG	3 cut(s)	303, 625, 744
HpySE526I	ACGT	1 cut(s)	813
Hsp92II	CATG	5 cut(s)	95, 201, 316, 392, 853
KpnI	GGTACC	1 cut(s)	399
Kzo9I	GATC	5 cut(s)	194, 419, 465, 718, 982
LmnI	GCTCC	2 cut(s)	139, 502
Lsp1109I	GCAGC	3 cut(s)	123, 486, 520
MaeI	CTAG	1 cut(s)	377
MaeII	ACGT	1 cut(s)	813
MaeIII	GTNAC	6 cut(s)	15, 124, 275, 281, 308, 845
MalI	GATC	5 cut(s)	196, 421, 467, 720, 984
MboI	GATC	5 cut(s)	194, 419, 465, 718, 982
MboII	GAAGA	7 cut(s)	25, 28, 31, 431, 551, 770, 890
MfeI	CAATTG	1 cut(s)	989
MflI	RGATCY	3 cut(s)	419, 465, 982
MhlI	GDGCHC	3 cut(s)	144, 915, 972
MlsI	TGGCCA	1 cut(s)	833
MluNI	TGGCCA	1 cut(s)	833
MlyI	GAGTC	1 cut(s)	132
MmeI	TCCRAC	1 cut(s)	274
MnlI	CCTC	6 cut(s)	317, 363, 694, 925, 962, 973
Mox20I	TGGCCA	1 cut(s)	833
MscI	TGGCCA	1 cut(s)	833
MseI	TTAA	5 cut(s)	146, 255, 272, 452, 513
MslI	CAYNNNNRTG	1 cut(s)	812
Msp20I	TGGCCA	1 cut(s)	833
MspCI	CTTAAG	1 cut(s)	145
MspI	CCGG	1 cut(s)	393
MspR9I	CCNGG	3 cut(s)	208, 485, 688
MunI	CAATTG	1 cut(s)	989
MvaI	CCWGG	3 cut(s)	208, 485, 688
MwoI	GCNNNNNNNGC	1 cut(s)	398
NdeII	GATC	5 cut(s)	194, 419, 465, 718, 982
NlaIII	CATG	5 cut(s)	95, 201, 316, 392, 853
NlaIV	GGNNCC	7 cut(s)	385, 397, 421, 498, 712, 984, 996
NmuCI	GTSAC	3 cut(s)	124, 275, 845
PfeI	GAWTC	1 cut(s)	203
PflMI	CCANNNNNTGG	1 cut(s)	416
PfoI	TCCNGGA	2 cut(s)	206, 483
PkrI	GCNGC	3 cut(s)	113, 476, 535
PleI	GAGTC	1 cut(s)	131
PpsI	GAGTC	1 cut(s)	131
PpuMI	RGGWCCY	1 cut(s)	383
Psp124BI	GAGCTC	1 cut(s)	144
Psp5II	RGGWCCY	1 cut(s)	383
Psp6I	CCWGG	3 cut(s)	206, 483, 686
PspFI	CCCAGC	1 cut(s)	965
PspGI	CCWGG	3 cut(s)	206, 483, 686
PspN4I	GGNNCC	7 cut(s)	385, 397, 421, 498, 712, 984, 996
PspPI	GGNCC	3 cut(s)	350, 383, 711
PspPPI	RGGWCCY	1 cut(s)	383
PsuI	RGATCY	3 cut(s)	419, 465, 982
RsaI	GTAC	3 cut(s)	397, 553, 752
RsaNI	GTAC	3 cut(s)	396, 552, 751
RseI	CAYNNNNRTG	1 cut(s)	812
SacI	GAGCTC	1 cut(s)	144
SaqAI	TTAA	5 cut(s)	146, 255, 272, 452, 513
SatI	GCNGC	3 cut(s)	112, 475, 534
Sau3AI	GATC	5 cut(s)	194, 419, 465, 718, 982
Sau96I	GGNCC	3 cut(s)	350, 383, 711
SchI	GAGTC	1 cut(s)	132
ScrFI	CCNGG	3 cut(s)	208, 485, 688
SduI	GDGCHC	3 cut(s)	144, 915, 972
SfcI	CTRYAG	1 cut(s)	469
SinI	GGWCC	2 cut(s)	350, 383
SmiMI	CAYNNNNRTG	1 cut(s)	812
SmlI	CTYRAG	2 cut(s)	145, 165
SmoI	CTYRAG	2 cut(s)	145, 165
SsiI	CCGC	1 cut(s)	399
SspMI	CTAG	1 cut(s)	377
SstI	GAGCTC	1 cut(s)	144
StyD4I	CCNGG	3 cut(s)	206, 483, 686
StyI	CCWWGG	1 cut(s)	675
TaaI	ACNGT	3 cut(s)	15, 281, 1003
TaiI	ACGT	1 cut(s)	816
TatI	WGTACW	2 cut(s)	551, 750
TfiI	GAWTC	1 cut(s)	203
Tru1I	TTAA	5 cut(s)	146, 255, 272, 452, 513
Tru9I	TTAA	5 cut(s)	146, 255, 272, 452, 513
TscAI	CASTG	1 cut(s)	18
TseFI	GTSAC	3 cut(s)	124, 275, 845
TseI	GCWGC	3 cut(s)	111, 474, 533
Tsp45I	GTSAC	3 cut(s)	124, 275, 845
TspDTI	ATGAA	7 cut(s)	19, 70, 80, 591, 796, 866, 924
TspGWI	ACGGA	1 cut(s)	152
TspRI	CASTG	1 cut(s)	18
Van91I	CCANNNNNTGG	1 cut(s)	416
Vha464I	CTTAAG	1 cut(s)	145
VpaK11BI	GGWCC	2 cut(s)	350, 383
XapI	RAATTY	5 cut(s)	335, 364, 595, 631, 959
XspI	CTAG	1 cut(s)	377

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.