Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008015

Physical Location & Seq

Genomic Coordinates Reverse (-)

22347451 .. 22348351

Gene Structure 901 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G60480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGGAGGAACAGAACGCTGGAACCGGTGCCGGCGAAAGCAGTTTGTTGGATGGATCAGGTCACTGGTGGTGGGCATTGGGAAGTGGAGCCCAAATCATGTGGGGAATACGATTGATTCGGAGAGGTTACGCCGGCGACGTTCGATTAATGCCGCTCAAAGCCTTCGGTGTCGCATCACTCTTCGTCGGGTCGTTAGCCACCAGCTCCGTCGCATTAGTCCGCGCCACGGGGATCCACACGGTTCAAGATGCGATTGATCTTGGAGCCAACATTAGAACCAATTTGGGGGTTACTCCTCAAATACCGGATAAGCAAATCACCGAGAGAGACGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

111

Amino Acids

11.73

Weight (kDa)

6.04

Isoelectric Point (pI)

26.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008015)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60480 AT3G60480 AT3G60480
fragaria_vesca	FvH4_7g09680
malus_domestica	MD00G1058900.v1.1 MD07G1101100.v1.1 MD07G1101200.v1.1
prunus_persica	Prupe.2G124300_v2.0.a1 Prupe.2G124300_v2.0.a1 Prupe.2G124300_v2.0.a1 Prupe.2G124300_v2.0.a1
pyrus_communis	pycom02g18170
rosa_chinensis	RchiOBHm_Chr1g0346581
rosa_laevigata	RLG00000028791
rosa_multiflora	Rmu_sc0002640.1_g000001 Rmu_sc0002640.1_g000008 Rmu_sc0006463.1_g000018
rosa_roxburghii	Rroxscaffold_4G00308290
rosa_rugosa	Rorug01G0181400
rosa_samantha	Rh1AG200500 Rh1BG166800 Rh1CG185500 Rh1DG197600
rosa_wichuraiana	Rw1G016800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	26
AccBSI	CCGCTC	1 cut(s)	154
AccII	CGCG	1 cut(s)	222
AciI	CCGC	2 cut(s)	152, 220
AclWI	GGATC	3 cut(s)	61, 226, 239
AfiI	CCNNNNNNNGG	2 cut(s)	226, 285
AgeI	ACCGGT	1 cut(s)	23
AgsI	TTSAA	1 cut(s)	245
AluBI	AGCT	1 cut(s)	204
AluI	AGCT	1 cut(s)	204
Alw26I	GTCTC	1 cut(s)	321
AlwI	GGATC	3 cut(s)	61, 226, 239
AseI	ATTAAT	1 cut(s)	146
AsiGI	ACCGGT	1 cut(s)	23
AspLEI	GCGC	1 cut(s)	224
AsuHPI	GGTGA	1 cut(s)	310
BamHI	GGATCC	1 cut(s)	231
BanI	GGYRCC	1 cut(s)	26
BanII	GRGCYC	1 cut(s)	91
BccI	CCATC	1 cut(s)	44
BcoDI	GTCTC	1 cut(s)	321
BisI	GCNGC	1 cut(s)	152
BlsI	GCNGC	1 cut(s)	153
BmiI	GGNNCC	5 cut(s)	22, 28, 88, 233, 265
BmsI	GCATC	2 cut(s)	182, 238
BsaJI	CCNNGG	1 cut(s)	225
BsaWI	WCCGGW	2 cut(s)	23, 304
Bsc4I	CCNNNNNNNGG	2 cut(s)	226, 285
Bse118I	RCCGGY	3 cut(s)	23, 29, 131
Bse1I	ACTGG	1 cut(s)	68
BseDI	CCNNGG	1 cut(s)	225
BseGI	GGATG	1 cut(s)	55
BseLI	CCNNNNNNNGG	2 cut(s)	226, 285
BseNI	ACTGG	1 cut(s)	68
BseRI	GAGGAG	1 cut(s)	285
Bsh1236I	CGCG	1 cut(s)	222
BshNI	GGYRCC	1 cut(s)	26
BshTI	ACCGGT	1 cut(s)	23
BsiSI	CCGG	4 cut(s)	24, 30, 132, 305
BslI	CCNNNNNNNGG	2 cut(s)	226, 285
BsmAI	GTCTC	1 cut(s)	321
BsmBI	CGTCTC	1 cut(s)	321
Bsp1286I	GDGCHC	1 cut(s)	91
Bsp143I	GATC	3 cut(s)	53, 231, 256
BspACI	CCGC	2 cut(s)	152, 220
BspFNI	CGCG	1 cut(s)	222
BspLI	GGNNCC	5 cut(s)	22, 28, 88, 233, 265
BspPI	GGATC	3 cut(s)	61, 226, 239
BspT107I	GGYRCC	1 cut(s)	26
BsrBI	CCGCTC	1 cut(s)	154
BsrFI	RCCGGY	3 cut(s)	23, 29, 131
BsrI	ACTGG	1 cut(s)	68
BssAI	RCCGGY	3 cut(s)	23, 29, 131
BssECI	CCNNGG	1 cut(s)	225
BssMI	GATC	3 cut(s)	53, 231, 256
Bst4CI	ACNGT	1 cut(s)	241
Bst6I	CTCTTC	1 cut(s)	185
BstC8I	GCNNGC	2 cut(s)	31, 133
BstDSI	CCRYGG	1 cut(s)	225
BstF5I	GGATG	1 cut(s)	55
BstFNI	CGCG	1 cut(s)	222
BstHHI	GCGC	1 cut(s)	224
BstKTI	GATC	3 cut(s)	56, 234, 259
BstMAI	GTCTC	1 cut(s)	321
BstMBI	GATC	3 cut(s)	53, 231, 256
BstUI	CGCG	1 cut(s)	222
BstX2I	RGATCY	1 cut(s)	231
BstYI	RGATCY	1 cut(s)	231
BtgI	CCRYGG	1 cut(s)	225
BtsCI	GGATG	1 cut(s)	55
BtsIMutI	CAGTG	1 cut(s)	61
Cac8I	GCNNGC	2 cut(s)	31, 133
CfoI	GCGC	1 cut(s)	224
Cfr10I	RCCGGY	3 cut(s)	23, 29, 131
CspAI	ACCGGT	1 cut(s)	23
CspCI	CAANNNNNGTGG	2 cut(s)	80, 115
CviAII	CATG	1 cut(s)	97
CviJI	RGCY	5 cut(s)	89, 161, 197, 204, 266
CviKI_1	RGCY	5 cut(s)	89, 161, 197, 204, 266
DpnI	GATC	3 cut(s)	55, 233, 258
DpnII	GATC	3 cut(s)	53, 231, 256
Eam1104I	CTCTTC	1 cut(s)	185
EarI	CTCTTC	1 cut(s)	185
Eco24I	GRGCYC	1 cut(s)	91
EcoT38I	GRGCYC	1 cut(s)	91
Esp3I	CGTCTC	1 cut(s)	321
FaeI	CATG	1 cut(s)	100
FaiI	YATR	1 cut(s)	98
FatI	CATG	1 cut(s)	96
Fnu4HI	GCNGC	1 cut(s)	152
FokI	GGATG	1 cut(s)	62
FriOI	GRGCYC	1 cut(s)	91
Fsp4HI	GCNGC	1 cut(s)	152
GlaI	GCGC	1 cut(s)	223
GluI	GCNGC	1 cut(s)	152
HapII	CCGG	4 cut(s)	24, 30, 132, 305
HhaI	GCGC	1 cut(s)	224
Hin1II	CATG	1 cut(s)	100
Hin6I	GCGC	1 cut(s)	222
HinP1I	GCGC	1 cut(s)	222
HinfI	GANTC	1 cut(s)	115
HpaII	CCGG	4 cut(s)	24, 30, 132, 305
HphI	GGTGA	1 cut(s)	310
Hpy188I	TCNGA	1 cut(s)	120
Hpy188III	TCNNGA	1 cut(s)	245
Hpy99I	CGWCG	3 cut(s)	140, 188, 212
HpyAV	CCTTC	1 cut(s)	172
HpyCH4III	ACNGT	1 cut(s)	241
HpyCH4IV	ACGT	1 cut(s)	138
HpySE526I	ACGT	1 cut(s)	138
Hsp92II	CATG	1 cut(s)	100
HspAI	GCGC	1 cut(s)	222
KroI	GCCGGC	2 cut(s)	29, 131
KroNI	GCCGGC	2 cut(s)	31, 133
Kzo9I	GATC	3 cut(s)	53, 231, 256
LmnI	GCTCC	3 cut(s)	86, 209, 263
LpnPI	CCDG	8 cut(s)	3, 37, 42, 43, 49, 145, 214, 318
LweI	GCATC	2 cut(s)	182, 238
MaeII	ACGT	1 cut(s)	138
MaeIII	GTNAC	3 cut(s)	59, 125, 289
MalI	GATC	3 cut(s)	55, 233, 258
MbiI	CCGCTC	1 cut(s)	154
MboI	GATC	3 cut(s)	53, 231, 256
MboII	GAAGA	1 cut(s)	172
MflI	RGATCY	1 cut(s)	231
MhlI	GDGCHC	1 cut(s)	91
MluCI	AATT	1 cut(s)	280
MmeI	TCCRAC	1 cut(s)	27
MnlI	CCTC	2 cut(s)	116, 306
MreI	CGCCGGCG	1 cut(s)	131
MroNI	GCCGGC	2 cut(s)	29, 131
MseI	TTAA	1 cut(s)	146
MspI	CCGG	4 cut(s)	24, 30, 132, 305
MvnI	CGCG	1 cut(s)	222
NaeI	GCCGGC	2 cut(s)	31, 133
NdeII	GATC	3 cut(s)	53, 231, 256
NgoMIV	GCCGGC	2 cut(s)	29, 131
NlaIII	CATG	1 cut(s)	100
NlaIV	GGNNCC	5 cut(s)	22, 28, 88, 233, 265
NmuCI	GTSAC	1 cut(s)	59
PcsI	WCGNNNNNNNCGW	1 cut(s)	135
PdiI	GCCGGC	2 cut(s)	31, 133
PfeI	GAWTC	1 cut(s)	115
PinAI	ACCGGT	1 cut(s)	23
PkrI	GCNGC	1 cut(s)	153
PshBI	ATTAAT	1 cut(s)	146
PspN4I	GGNNCC	5 cut(s)	22, 28, 88, 233, 265
PsuI	RGATCY	1 cut(s)	231
SaqAI	TTAA	1 cut(s)	146
SatI	GCNGC	1 cut(s)	152
Sau3AI	GATC	3 cut(s)	53, 231, 256
SduI	GDGCHC	1 cut(s)	91
SetI	ASST	4 cut(s)	61, 127, 141, 206
SfaNI	GCATC	2 cut(s)	182, 238
SgrAI	CRCCGGYG	1 cut(s)	131
Sse9I	AATT	1 cut(s)	280
SsiI	CCGC	2 cut(s)	152, 220
TaaI	ACNGT	1 cut(s)	241
TaiI	ACGT	1 cut(s)	141
TaqI	TCGA	1 cut(s)	142
TasI	AATT	1 cut(s)	280
TauI	GCSGC	1 cut(s)	154
TfiI	GAWTC	1 cut(s)	115
Tru1I	TTAA	1 cut(s)	146
Tru9I	TTAA	1 cut(s)	146
TscAI	CASTG	1 cut(s)	68
TseFI	GTSAC	1 cut(s)	59
Tsp45I	GTSAC	1 cut(s)	59
TspGWI	ACGGA	1 cut(s)	196
TspRI	CASTG	1 cut(s)	68
VspI	ATTAAT	1 cut(s)	146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.