Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0008015

Physical Location & Seq

Genomic Coordinates Reverse (-)

16467721 .. 16468506

Gene Structure 786 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g18170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGCAAGAGGACACTCCGGAGATTGGAAGCGGCGGTAGCGGCGGGTCACATACCCACTTGTGGTGGGCCGGGGCCAGCGCGGCTCAGCTGGGTTGGGCCGTTATGTCGTCCCGGAAAGGCTGCGCCGGCAACTCCTTTACGATGCCTTTCAAGGCCTTCGCCGTTGCTTCCCTCTACGTTGGCTCCATCGCCACCGCCGGCGTCGCTGGCCTCCATGCCTCTGGCATCAGCGAGGTGTCATTTGGGGCATTGGGTGTGAATCAAATTTTAGACCTTTGCGGGTGGTTGAGTGGCTTTCGGTTCCTTTTTATCCGTTTAGATCTTTTGGATTTGGATTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

114

Amino Acids

11.68

Weight (kDa)

5.35

Isoelectric Point (pI)

30.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008015)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60480 AT3G60480 AT3G60480
fragaria_vesca	FvH4_7g09680
malus_domestica	MD00G1058900.v1.1 MD07G1101100.v1.1 MD07G1101200.v1.1
prunus_persica	Prupe.2G124300_v2.0.a1 Prupe.2G124300_v2.0.a1 Prupe.2G124300_v2.0.a1 Prupe.2G124300_v2.0.a1
pyrus_communis	pycom02g18170
rosa_chinensis	RchiOBHm_Chr1g0346581
rosa_laevigata	RLG00000028791
rosa_multiflora	Rmu_sc0002640.1_g000001 Rmu_sc0002640.1_g000008 Rmu_sc0006463.1_g000018
rosa_roxburghii	Rroxscaffold_4G00308290
rosa_rugosa	Rorug01G0181400
rosa_samantha	Rh1AG200500 Rh1BG166800 Rh1CG185500 Rh1DG197600
rosa_wichuraiana	Rw1G016800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	80
AccIII	TCCGGA	1 cut(s)	16
AciI	CCGC	7 cut(s)	30, 33, 39, 42, 80, 195, 279
AcsI	RAATTY	1 cut(s)	264
AcyI	GRCGYC	1 cut(s)	201
AfiI	CCNNNNNNNGG	2 cut(s)	23, 60
AgsI	TTSAA	1 cut(s)	151
AluBI	AGCT	1 cut(s)	88
AluI	AGCT	1 cut(s)	88
Aor13HI	TCCGGA	1 cut(s)	16
AoxI	GGCC	5 cut(s)	66, 72, 96, 153, 208
ApeKI	GCWGC	1 cut(s)	120
ApoI	RAATTY	1 cut(s)	264
AspLEI	GCGC	2 cut(s)	80, 125
AspS9I	GGNCC	3 cut(s)	66, 72, 96
AsuC2I	CCSGG	2 cut(s)	70, 112
BbvI	GCAGC	1 cut(s)	107
BccI	CCATC	1 cut(s)	194
BceAI	ACGGC	2 cut(s)	83, 146
BcnI	CCSGG	2 cut(s)	70, 112
BglI	GCCNNNNNGGC	1 cut(s)	80
BglII	AGATCT	1 cut(s)	319
BisI	GCNGC	4 cut(s)	31, 40, 81, 121
BlpI	GCTNAGC	1 cut(s)	84
BlsI	GCNGC	4 cut(s)	32, 41, 82, 122
Bme1390I	CCNGG	2 cut(s)	70, 112
BmgT120I	GGNCC	3 cut(s)	66, 72, 96
BmiI	GGNNCC	3 cut(s)	73, 184, 302
BmrFI	CCNGG	2 cut(s)	70, 112
BmsI	GCATC	2 cut(s)	132, 234
Bpu1102I	GCTNAGC	1 cut(s)	84
BpuMI	CCSGG	2 cut(s)	70, 112
BsaHI	GRCGYC	1 cut(s)	201
BsaJI	CCNNGG	1 cut(s)	69
BsaWI	WCCGGW	1 cut(s)	16
BsaXI	ACNNNNNCTCC	2 cut(s)	167, 197
Bsc4I	CCNNNNNNNGG	2 cut(s)	23, 60
Bse118I	RCCGGY	2 cut(s)	125, 197
BseAI	TCCGGA	1 cut(s)	16
BseDI	CCNNGG	1 cut(s)	69
BseLI	CCNNNNNNNGG	2 cut(s)	23, 60
BseMII	CTCAG	1 cut(s)	98
BseXI	GCAGC	1 cut(s)	107
BseYI	CCCAGC	1 cut(s)	88
Bsh1236I	CGCG	1 cut(s)	80
BshFI	GGCC	5 cut(s)	68, 74, 98, 155, 210
BsiSI	CCGG	5 cut(s)	17, 69, 112, 126, 198
BslFI	GGGAC	1 cut(s)	94
BslI	CCNNNNNNNGG	2 cut(s)	23, 60
BsmFI	GGGAC	1 cut(s)	94
BsnI	GGCC	5 cut(s)	68, 74, 98, 155, 210
Bsp13I	TCCGGA	1 cut(s)	16
Bsp143I	GATC	1 cut(s)	319
Bsp1720I	GCTNAGC	1 cut(s)	84
BspACI	CCGC	7 cut(s)	30, 33, 39, 42, 80, 195, 279
BspANI	GGCC	5 cut(s)	68, 74, 98, 155, 210
BspCNI	CTCAG	1 cut(s)	97
BspEI	TCCGGA	1 cut(s)	16
BspFNI	CGCG	1 cut(s)	80
BspLI	GGNNCC	3 cut(s)	73, 184, 302
BsrFI	RCCGGY	2 cut(s)	125, 197
BssAI	RCCGGY	2 cut(s)	125, 197
BssECI	CCNNGG	1 cut(s)	69
BssMI	GATC	1 cut(s)	319
BssNI	GRCGYC	1 cut(s)	201
BstACI	GRCGYC	1 cut(s)	201
BstC8I	GCNNGC	4 cut(s)	76, 127, 199, 208
BstDEI	CTNAG	2 cut(s)	84, 339
BstFNI	CGCG	1 cut(s)	80
BstHHI	GCGC	2 cut(s)	80, 125
BstKTI	GATC	1 cut(s)	322
BstMBI	GATC	1 cut(s)	319
BstMWI	GCNNNNNNNGC	6 cut(s)	36, 39, 80, 126, 203, 207
BstSCI	CCNGG	2 cut(s)	68, 110
BstUI	CGCG	1 cut(s)	80
BstV1I	GCAGC	1 cut(s)	107
BstX2I	RGATCY	1 cut(s)	319
BstXI	CCANNNNNNTGG	1 cut(s)	221
BstYI	RGATCY	1 cut(s)	319
BsuRI	GGCC	5 cut(s)	68, 74, 98, 155, 210
BtgZI	GCGATG	1 cut(s)	172
Cac8I	GCNNGC	4 cut(s)	76, 127, 199, 208
CfoI	GCGC	2 cut(s)	80, 125
Cfr10I	RCCGGY	2 cut(s)	125, 197
Cfr13I	GGNCC	3 cut(s)	66, 72, 96
CseI	GACGC	1 cut(s)	190
CviAII	CATG	1 cut(s)	215
DdeI	CTNAG	2 cut(s)	84, 339
DpnI	GATC	1 cut(s)	321
DpnII	GATC	1 cut(s)	319
Eco147I	AGGCCT	1 cut(s)	155
FaeI	CATG	1 cut(s)	218
FaiI	YATR	3 cut(s)	51, 104, 216
FaqI	GGGAC	1 cut(s)	94
FatI	CATG	1 cut(s)	214
FauI	CCCGC	2 cut(s)	35, 272
Fnu4HI	GCNGC	4 cut(s)	31, 40, 81, 121
Fsp4HI	GCNGC	4 cut(s)	31, 40, 81, 121
GlaI	GCGC	2 cut(s)	79, 124
GluI	GCNGC	4 cut(s)	31, 40, 81, 121
GsaI	CCCAGC	1 cut(s)	92
HaeIII	GGCC	5 cut(s)	68, 74, 98, 155, 210
HapII	CCGG	5 cut(s)	17, 69, 112, 126, 198
HgaI	GACGC	1 cut(s)	190
HhaI	GCGC	2 cut(s)	80, 125
Hin1I	GRCGYC	1 cut(s)	201
Hin1II	CATG	1 cut(s)	218
Hin6I	GCGC	2 cut(s)	78, 123
HinP1I	GCGC	2 cut(s)	78, 123
HinfI	GANTC	2 cut(s)	259, 335
HpaII	CCGG	5 cut(s)	17, 69, 112, 126, 198
Hpy188III	TCNNGA	1 cut(s)	17
Hpy99I	CGWCG	1 cut(s)	206
HpyAV	CCTTC	1 cut(s)	166
HpyCH4IV	ACGT	1 cut(s)	177
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	6 cut(s)	36, 39, 80, 126, 203, 207
HpyF3I	CTNAG	2 cut(s)	84, 339
HpySE526I	ACGT	1 cut(s)	177
Hsp92I	GRCGYC	1 cut(s)	201
Hsp92II	CATG	1 cut(s)	218
HspAI	GCGC	2 cut(s)	78, 123
Kpn2I	TCCGGA	1 cut(s)	16
KroI	GCCGGC	2 cut(s)	125, 197
KroNI	GCCGGC	2 cut(s)	127, 199
Kzo9I	GATC	1 cut(s)	319
LmnI	GCTCC	1 cut(s)	188
LpnPI	CCDG	9 cut(s)	30, 74, 82, 88, 125, 139, 192, 207, 211
Lsp1109I	GCAGC	1 cut(s)	107
LweI	GCATC	2 cut(s)	132, 234
MaeII	ACGT	1 cut(s)	177
MaeIII	GTNAC	1 cut(s)	45
MalI	GATC	1 cut(s)	321
MboI	GATC	1 cut(s)	319
MflI	RGATCY	1 cut(s)	319
MluCI	AATT	1 cut(s)	264
MnlI	CCTC	4 cut(s)	182, 221, 226, 229
MreI	CGCCGGCG	1 cut(s)	197
MroI	TCCGGA	1 cut(s)	16
MroNI	GCCGGC	2 cut(s)	125, 197
MspA1I	CMGCKG	1 cut(s)	88
MspI	CCGG	5 cut(s)	17, 69, 112, 126, 198
MspR9I	CCNGG	2 cut(s)	70, 112
MvnI	CGCG	1 cut(s)	80
MwoI	GCNNNNNNNGC	6 cut(s)	36, 39, 80, 126, 203, 207
NaeI	GCCGGC	2 cut(s)	127, 199
NciI	CCSGG	2 cut(s)	70, 112
NdeII	GATC	1 cut(s)	319
NgoMIV	GCCGGC	2 cut(s)	125, 197
NlaIII	CATG	1 cut(s)	218
NlaIV	GGNNCC	3 cut(s)	73, 184, 302
NmuCI	GTSAC	1 cut(s)	45
PceI	AGGCCT	1 cut(s)	155
PdiI	GCCGGC	2 cut(s)	127, 199
PfeI	GAWTC	2 cut(s)	259, 335
PfoI	TCCNGGA	1 cut(s)	110
PkrI	GCNGC	4 cut(s)	32, 41, 82, 122
PspFI	CCCAGC	1 cut(s)	88
PspN4I	GGNNCC	3 cut(s)	73, 184, 302
PspPI	GGNCC	3 cut(s)	66, 72, 96
PsuI	RGATCY	1 cut(s)	319
PvuII	CAGCTG	1 cut(s)	88
SatI	GCNGC	4 cut(s)	31, 40, 81, 121
Sau3AI	GATC	1 cut(s)	319
Sau96I	GGNCC	3 cut(s)	66, 72, 96
ScrFI	CCNGG	2 cut(s)	70, 112
SetI	ASST	4 cut(s)	90, 180, 237, 276
SfaNI	GCATC	2 cut(s)	132, 234
SgrAI	CRCCGGYG	1 cut(s)	197
Sse9I	AATT	1 cut(s)	264
SseBI	AGGCCT	1 cut(s)	155
SsiI	CCGC	7 cut(s)	30, 33, 39, 42, 80, 195, 279
StuI	AGGCCT	1 cut(s)	155
StyD4I	CCNGG	2 cut(s)	68, 110
TaiI	ACGT	1 cut(s)	180
TasI	AATT	1 cut(s)	264
TauI	GCSGC	3 cut(s)	33, 42, 83
TfiI	GAWTC	2 cut(s)	259, 335
TseFI	GTSAC	1 cut(s)	45
TseI	GCWGC	1 cut(s)	120
Tsp45I	GTSAC	1 cut(s)	45
TspGWI	ACGGA	1 cut(s)	302
XapI	RAATTY	1 cut(s)	264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.