Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002640.1

Orthogroup ID

OG0008015

Physical Location & Seq

Genomic Coordinates Reverse (-)

40829 .. 42652

Gene Structure 1824 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002640.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

atgcaggcggaggaggaggagcagcagcaaaaggaaaatggcggcaactatcggaccctcatgcccgacactcaccttttgtgggccggagccagcgtggcccagttcggctgggcggtagtcctgtaccggaaaggatccggcgcccactccacttctatgcctttcagggctttcgctgtcgcatcactcttcgtcggcgccggcgccaccgccgccttcgctggcctccgtgcttctggtatccacaaggtggaggacctaattcagttgggtgcaaacataagaactggcctcggggtacaacggagggcaagggatgaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

108

Amino Acids

11.6

Weight (kDa)

8.2

Isoelectric Point (pI)

34.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008015)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60480 AT3G60480 AT3G60480
fragaria_vesca	FvH4_7g09680
malus_domestica	MD00G1058900.v1.1 MD07G1101100.v1.1 MD07G1101200.v1.1
prunus_persica	Prupe.2G124300_v2.0.a1 Prupe.2G124300_v2.0.a1 Prupe.2G124300_v2.0.a1 Prupe.2G124300_v2.0.a1
pyrus_communis	pycom02g18170
rosa_chinensis	RchiOBHm_Chr1g0346581
rosa_laevigata	RLG00000028791
rosa_multiflora	Rmu_sc0002640.1_g000001 Rmu_sc0002640.1_g000008 Rmu_sc0006463.1_g000018
rosa_roxburghii	Rroxscaffold_4G00308290
rosa_rugosa	Rorug01G0181400
rosa_samantha	Rh1AG200500 Rh1BG166800 Rh1CG185500 Rh1DG197600
rosa_wichuraiana	Rw1G016800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	143, 200, 206
AccB7I	CCANNNNNTGG	1 cut(s)	253
AciI	CCGC	5 cut(s)	8, 42, 116, 213, 216
AclWI	GGATC	2 cut(s)	132, 145
AcyI	GRCGYC	3 cut(s)	144, 201, 207
AdeI	CACNNNGTG	1 cut(s)	253
AfaI	GTAC	2 cut(s)	128, 303
AfiI	CCNNNNNNNGG	2 cut(s)	82, 253
AlwI	GGATC	2 cut(s)	132, 145
Ama87I	CYCGRG	1 cut(s)	296
AoxI	GGCC	4 cut(s)	84, 99, 226, 292
ApeKI	GCWGC	2 cut(s)	22, 25
AspLEI	GCGC	3 cut(s)	146, 203, 209
AspS9I	GGNCC	4 cut(s)	54, 84, 100, 259
AsuHPI	GGTGA	1 cut(s)	65
AvaI	CYCGRG	1 cut(s)	296
AvaII	GGWCC	2 cut(s)	54, 259
BamHI	GGATCC	1 cut(s)	137
BanI	GGYRCC	3 cut(s)	143, 200, 206
BbvI	GCAGC	2 cut(s)	34, 37
BciVI	GTATCC	1 cut(s)	254
BfoI	RGCGCY	3 cut(s)	147, 204, 210
BfuI	GTATCC	1 cut(s)	254
BglI	GCCNNNNNGGC	1 cut(s)	98
BisI	GCNGC	4 cut(s)	23, 26, 43, 216
BlsI	GCNGC	4 cut(s)	24, 27, 44, 217
Bme18I	GGWCC	2 cut(s)	54, 259
BmeT110I	CYCGRG	1 cut(s)	296
BmgT120I	GGNCC	4 cut(s)	54, 84, 100, 259
BmiI	GGNNCC	6 cut(s)	56, 91, 139, 145, 202, 208
BmrI	ACTGGG	1 cut(s)	97
BmsI	GCATC	1 cut(s)	194
BmuI	ACTGGG	1 cut(s)	97
BsaHI	GRCGYC	3 cut(s)	144, 201, 207
BsaJI	CCNNGG	1 cut(s)	295
BsaWI	WCCGGW	1 cut(s)	129
BsaXI	ACNNNNNCTCC	2 cut(s)	81, 111
Bsc4I	CCNNNNNNNGG	2 cut(s)	82, 253
Bse118I	RCCGGY	1 cut(s)	203
Bse1I	ACTGG	2 cut(s)	103, 295
BseDI	CCNNGG	1 cut(s)	295
BseGI	GGATG	1 cut(s)	325
BseLI	CCNNNNNNNGG	2 cut(s)	82, 253
BseNI	ACTGG	2 cut(s)	103, 295
BseRI	GAGGAG	3 cut(s)	26, 29, 32
BseXI	GCAGC	2 cut(s)	34, 37
BseYI	CCCAGC	1 cut(s)	111
BshFI	GGCC	4 cut(s)	86, 101, 228, 294
BshNI	GGYRCC	3 cut(s)	143, 200, 206
BsiHKCI	CYCGRG	1 cut(s)	296
BsiSI	CCGG	4 cut(s)	87, 130, 141, 204
BslI	CCNNNNNNNGG	2 cut(s)	82, 253
BsnI	GGCC	4 cut(s)	86, 101, 228, 294
BsoBI	CYCGRG	1 cut(s)	296
Bsp143I	GATC	1 cut(s)	137
BspACI	CCGC	5 cut(s)	8, 42, 116, 213, 216
BspANI	GGCC	4 cut(s)	86, 101, 228, 294
BspLI	GGNNCC	6 cut(s)	56, 91, 139, 145, 202, 208
BspPI	GGATC	2 cut(s)	132, 145
BspT107I	GGYRCC	3 cut(s)	143, 200, 206
BsrFI	RCCGGY	1 cut(s)	203
BsrI	ACTGG	2 cut(s)	103, 295
BssAI	RCCGGY	1 cut(s)	203
BssECI	CCNNGG	1 cut(s)	295
BssMI	GATC	1 cut(s)	137
BssNI	GRCGYC	3 cut(s)	144, 201, 207
Bst6I	CTCTTC	1 cut(s)	197
BstACI	GRCGYC	3 cut(s)	144, 201, 207
BstC8I	GCNNGC	4 cut(s)	6, 94, 205, 226
BstF5I	GGATG	1 cut(s)	325
BstH2I	RGCGCY	3 cut(s)	147, 204, 210
BstHHI	GCGC	3 cut(s)	146, 203, 209
BstKTI	GATC	1 cut(s)	140
BstMBI	GATC	1 cut(s)	137
BstMWI	GCNNNNNNNGC	3 cut(s)	98, 215, 221
BstV1I	GCAGC	2 cut(s)	34, 37
BstX2I	RGATCY	1 cut(s)	137
BstYI	RGATCY	1 cut(s)	137
BsuI	GTATCC	1 cut(s)	254
BsuRI	GGCC	4 cut(s)	86, 101, 228, 294
BtsCI	GGATG	1 cut(s)	325
Cac8I	GCNNGC	4 cut(s)	6, 94, 205, 226
CfoI	GCGC	3 cut(s)	146, 203, 209
Cfr10I	RCCGGY	1 cut(s)	203
Cfr13I	GGNCC	4 cut(s)	54, 84, 100, 259
Csp6I	GTAC	2 cut(s)	127, 302
CviAII	CATG	1 cut(s)	61
CviJI	RGCY	7 cut(s)	86, 92, 101, 111, 173, 228, 294
CviKI_1	RGCY	7 cut(s)	86, 92, 101, 111, 173, 228, 294
CviQI	GTAC	2 cut(s)	127, 302
DinI	GGCGCC	3 cut(s)	145, 202, 208
DpnI	GATC	1 cut(s)	139
DpnII	GATC	1 cut(s)	137
DraIII	CACNNNGTG	1 cut(s)	253
Eam1104I	CTCTTC	1 cut(s)	197
EarI	CTCTTC	1 cut(s)	197
EciI	GGCGGA	1 cut(s)	23
Eco47I	GGWCC	2 cut(s)	54, 259
Eco88I	CYCGRG	1 cut(s)	296
EcoO109I	RGGNCCY	1 cut(s)	259
EgeI	GGCGCC	3 cut(s)	145, 202, 208
EheI	GGCGCC	3 cut(s)	145, 202, 208
FaeI	CATG	1 cut(s)	64
FaiI	YATR	3 cut(s)	62, 161, 284
FatI	CATG	1 cut(s)	60
Fnu4HI	GCNGC	4 cut(s)	23, 26, 43, 216
Fsp4HI	GCNGC	4 cut(s)	23, 26, 43, 216
GlaI	GCGC	3 cut(s)	145, 202, 208
GluI	GCNGC	4 cut(s)	23, 26, 43, 216
GsaI	CCCAGC	1 cut(s)	115
HaeII	RGCGCY	3 cut(s)	147, 204, 210
HaeIII	GGCC	4 cut(s)	86, 101, 228, 294
HapII	CCGG	4 cut(s)	87, 130, 141, 204
HhaI	GCGC	3 cut(s)	146, 203, 209
Hin1I	GRCGYC	3 cut(s)	144, 201, 207
Hin1II	CATG	1 cut(s)	64
Hin6I	GCGC	3 cut(s)	144, 201, 207
HinP1I	GCGC	3 cut(s)	144, 201, 207
HpaII	CCGG	4 cut(s)	87, 130, 141, 204
HphI	GGTGA	1 cut(s)	65
Hpy188I	TCNGA	1 cut(s)	54
Hpy99I	CGWCG	1 cut(s)	200
HpyAV	CCTTC	1 cut(s)	229
HpyCH4V	TGCA	2 cut(s)	4, 278
HpyF10VI	GCNNNNNNNGC	3 cut(s)	98, 215, 221
Hsp92I	GRCGYC	3 cut(s)	144, 201, 207
Hsp92II	CATG	1 cut(s)	64
HspAI	GCGC	3 cut(s)	144, 201, 207
KasI	GGCGCC	3 cut(s)	143, 200, 206
KroI	GCCGGC	1 cut(s)	203
KroNI	GCCGGC	1 cut(s)	205
Kzo9I	GATC	1 cut(s)	137
LmnI	GCTCC	2 cut(s)	19, 89
Lsp1109I	GCAGC	2 cut(s)	34, 37
LweI	GCATC	1 cut(s)	194
MalI	GATC	1 cut(s)	139
MboI	GATC	1 cut(s)	137
MboII	GAAGA	1 cut(s)	184
MflI	RGATCY	1 cut(s)	137
MluCI	AATT	1 cut(s)	264
Mly113I	GGCGCC	3 cut(s)	144, 201, 207
MnlI	CCTC	8 cut(s)	4, 7, 10, 68, 239, 250, 303, 305
MreI	CGCCGGCG	1 cut(s)	203
MroNI	GCCGGC	1 cut(s)	203
MslI	CAYNNNNRTG	1 cut(s)	158
MspI	CCGG	4 cut(s)	87, 130, 141, 204
MwoI	GCNNNNNNNGC	3 cut(s)	98, 215, 221
NaeI	GCCGGC	1 cut(s)	205
NarI	GGCGCC	3 cut(s)	144, 201, 207
NdeII	GATC	1 cut(s)	137
NgoMIV	GCCGGC	1 cut(s)	203
NlaIII	CATG	1 cut(s)	64
NlaIV	GGNNCC	6 cut(s)	56, 91, 139, 145, 202, 208
PdiI	GCCGGC	1 cut(s)	205
PflMI	CCANNNNNTGG	1 cut(s)	253
PkrI	GCNGC	4 cut(s)	24, 27, 44, 217
PluTI	GGCGCC	3 cut(s)	147, 204, 210
PpuMI	RGGWCCY	1 cut(s)	259
Psp5II	RGGWCCY	1 cut(s)	259
PspFI	CCCAGC	1 cut(s)	111
PspN4I	GGNNCC	6 cut(s)	56, 91, 139, 145, 202, 208
PspPI	GGNCC	4 cut(s)	54, 84, 100, 259
PspPPI	RGGWCCY	1 cut(s)	259
PsuI	RGATCY	1 cut(s)	137
RsaI	GTAC	2 cut(s)	128, 303
RsaNI	GTAC	2 cut(s)	127, 302
RseI	CAYNNNNRTG	1 cut(s)	158
SatI	GCNGC	4 cut(s)	23, 26, 43, 216
Sau3AI	GATC	1 cut(s)	137
Sau96I	GGNCC	4 cut(s)	54, 84, 100, 259
SetI	ASST	3 cut(s)	78, 255, 264
SfaNI	GCATC	1 cut(s)	194
SfoI	GGCGCC	3 cut(s)	145, 202, 208
SgrAI	CRCCGGYG	1 cut(s)	203
SinI	GGWCC	2 cut(s)	54, 259
SmiMI	CAYNNNNRTG	1 cut(s)	158
Sse9I	AATT	1 cut(s)	264
SsiI	CCGC	5 cut(s)	8, 42, 116, 213, 216
SspDI	GGCGCC	3 cut(s)	143, 200, 206
TasI	AATT	1 cut(s)	264
TauI	GCSGC	2 cut(s)	45, 218
TseI	GCWGC	2 cut(s)	22, 25
TspGWI	ACGGA	2 cut(s)	221, 322
Van91I	CCANNNNNTGG	1 cut(s)	253
VpaK11BI	GGWCC	2 cut(s)	54, 259

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.