Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006463.1

Orthogroup ID

OG0008015

Physical Location & Seq

Genomic Coordinates Forward (+)

87660 .. 89487

Gene Structure 1828 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006463.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

atgcaggcggaggaggaggagaagcagcagcaaaaggaaaatggcggcaactatcggaccctcatgcccgacactcactttttgtgggccggagccagcgcggcccagttcggctgggcggtagtcttgtaccggaaaggatccggcgcccactccacttccatgcctttcagggctttcgctgtcgcatccctcttcgtcggcgctggcgccaccgccgccttcgctggcctccgtgcttctggtatccacaaggtggaggacctaattcagttgggtgcaaacataagaactggcctcggggtacaacggagggcaagggatgaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

109

Amino Acids

11.74

Weight (kDa)

9.3

Isoelectric Point (pI)

33.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008015)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60480 AT3G60480 AT3G60480
fragaria_vesca	FvH4_7g09680
malus_domestica	MD00G1058900.v1.1 MD07G1101100.v1.1 MD07G1101200.v1.1
prunus_persica	Prupe.2G124300_v2.0.a1 Prupe.2G124300_v2.0.a1 Prupe.2G124300_v2.0.a1 Prupe.2G124300_v2.0.a1
pyrus_communis	pycom02g18170
rosa_chinensis	RchiOBHm_Chr1g0346581
rosa_laevigata	RLG00000028791
rosa_multiflora	Rmu_sc0002640.1_g000001 Rmu_sc0002640.1_g000008 Rmu_sc0006463.1_g000018
rosa_roxburghii	Rroxscaffold_4G00308290
rosa_rugosa	Rorug01G0181400
rosa_samantha	Rh1AG200500 Rh1BG166800 Rh1CG185500 Rh1DG197600
rosa_wichuraiana	Rw1G016800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	146, 209
AccB7I	CCANNNNNTGG	1 cut(s)	256
AccII	CGCG	1 cut(s)	101
AciI	CCGC	6 cut(s)	8, 45, 101, 119, 216, 219
AclWI	GGATC	2 cut(s)	135, 148
AcyI	GRCGYC	2 cut(s)	147, 210
AdeI	CACNNNGTG	1 cut(s)	256
AfaI	GTAC	2 cut(s)	131, 306
AfiI	CCNNNNNNNGG	1 cut(s)	256
AlwI	GGATC	2 cut(s)	135, 148
Ama87I	CYCGRG	1 cut(s)	299
AoxI	GGCC	4 cut(s)	87, 102, 229, 295
ApeKI	GCWGC	2 cut(s)	25, 28
AspLEI	GCGC	4 cut(s)	101, 149, 206, 212
AspS9I	GGNCC	4 cut(s)	57, 87, 103, 262
AvaI	CYCGRG	1 cut(s)	299
AvaII	GGWCC	2 cut(s)	57, 262
BamHI	GGATCC	1 cut(s)	140
BanI	GGYRCC	2 cut(s)	146, 209
BbvI	GCAGC	2 cut(s)	37, 40
BciVI	GTATCC	1 cut(s)	257
BfoI	RGCGCY	3 cut(s)	150, 207, 213
BfuI	GTATCC	1 cut(s)	257
BglI	GCCNNNNNGGC	1 cut(s)	101
BisI	GCNGC	5 cut(s)	26, 29, 46, 102, 219
BlsI	GCNGC	5 cut(s)	27, 30, 47, 103, 220
Bme18I	GGWCC	2 cut(s)	57, 262
BmeT110I	CYCGRG	1 cut(s)	299
BmgT120I	GGNCC	4 cut(s)	57, 87, 103, 262
BmiI	GGNNCC	5 cut(s)	59, 94, 142, 148, 211
BmrI	ACTGGG	1 cut(s)	100
BmsI	GCATC	1 cut(s)	197
BmuI	ACTGGG	1 cut(s)	100
BsaHI	GRCGYC	2 cut(s)	147, 210
BsaJI	CCNNGG	1 cut(s)	298
BsaWI	WCCGGW	1 cut(s)	132
Bsc4I	CCNNNNNNNGG	1 cut(s)	256
Bse1I	ACTGG	2 cut(s)	106, 298
BseDI	CCNNGG	1 cut(s)	298
BseGI	GGATG	2 cut(s)	188, 328
BseLI	CCNNNNNNNGG	1 cut(s)	256
BseNI	ACTGG	2 cut(s)	106, 298
BseRI	GAGGAG	3 cut(s)	26, 29, 32
BseXI	GCAGC	2 cut(s)	37, 40
BseYI	CCCAGC	1 cut(s)	114
Bsh1236I	CGCG	1 cut(s)	101
BshFI	GGCC	4 cut(s)	89, 104, 231, 297
BshNI	GGYRCC	2 cut(s)	146, 209
BsiHKCI	CYCGRG	1 cut(s)	299
BsiSI	CCGG	3 cut(s)	90, 133, 144
BslI	CCNNNNNNNGG	1 cut(s)	256
BsnI	GGCC	4 cut(s)	89, 104, 231, 297
BsoBI	CYCGRG	1 cut(s)	299
Bsp143I	GATC	1 cut(s)	140
BspACI	CCGC	6 cut(s)	8, 45, 101, 119, 216, 219
BspANI	GGCC	4 cut(s)	89, 104, 231, 297
BspFNI	CGCG	1 cut(s)	101
BspLI	GGNNCC	5 cut(s)	59, 94, 142, 148, 211
BspPI	GGATC	2 cut(s)	135, 148
BspT107I	GGYRCC	2 cut(s)	146, 209
BsrI	ACTGG	2 cut(s)	106, 298
BssECI	CCNNGG	1 cut(s)	298
BssMI	GATC	1 cut(s)	140
BssNI	GRCGYC	2 cut(s)	147, 210
Bst6I	CTCTTC	1 cut(s)	200
BstACI	GRCGYC	2 cut(s)	147, 210
BstC8I	GCNNGC	4 cut(s)	6, 97, 208, 229
BstF5I	GGATG	2 cut(s)	188, 328
BstFNI	CGCG	1 cut(s)	101
BstH2I	RGCGCY	3 cut(s)	150, 207, 213
BstHHI	GCGC	4 cut(s)	101, 149, 206, 212
BstKTI	GATC	1 cut(s)	143
BstMBI	GATC	1 cut(s)	140
BstMWI	GCNNNNNNNGC	3 cut(s)	101, 218, 224
BstUI	CGCG	1 cut(s)	101
BstV1I	GCAGC	2 cut(s)	37, 40
BstX2I	RGATCY	1 cut(s)	140
BstYI	RGATCY	1 cut(s)	140
BsuI	GTATCC	1 cut(s)	257
BsuRI	GGCC	4 cut(s)	89, 104, 231, 297
BtsCI	GGATG	2 cut(s)	188, 328
Cac8I	GCNNGC	4 cut(s)	6, 97, 208, 229
CfoI	GCGC	4 cut(s)	101, 149, 206, 212
Cfr13I	GGNCC	4 cut(s)	57, 87, 103, 262
Csp6I	GTAC	2 cut(s)	130, 305
CviAII	CATG	2 cut(s)	64, 163
CviJI	RGCY	7 cut(s)	89, 95, 104, 114, 176, 231, 297
CviKI_1	RGCY	7 cut(s)	89, 95, 104, 114, 176, 231, 297
CviQI	GTAC	2 cut(s)	130, 305
DinI	GGCGCC	2 cut(s)	148, 211
DpnI	GATC	1 cut(s)	142
DpnII	GATC	1 cut(s)	140
DraIII	CACNNNGTG	1 cut(s)	256
Eam1104I	CTCTTC	1 cut(s)	200
EarI	CTCTTC	1 cut(s)	200
EciI	GGCGGA	1 cut(s)	23
Eco47I	GGWCC	2 cut(s)	57, 262
Eco88I	CYCGRG	1 cut(s)	299
EcoO109I	RGGNCCY	1 cut(s)	262
EgeI	GGCGCC	2 cut(s)	148, 211
EheI	GGCGCC	2 cut(s)	148, 211
FaeI	CATG	2 cut(s)	67, 166
FaiI	YATR	3 cut(s)	65, 164, 287
FatI	CATG	2 cut(s)	63, 162
Fnu4HI	GCNGC	5 cut(s)	26, 29, 46, 102, 219
FokI	GGATG	1 cut(s)	175
Fsp4HI	GCNGC	5 cut(s)	26, 29, 46, 102, 219
GlaI	GCGC	4 cut(s)	100, 148, 205, 211
GluI	GCNGC	5 cut(s)	26, 29, 46, 102, 219
GsaI	CCCAGC	1 cut(s)	118
HaeII	RGCGCY	3 cut(s)	150, 207, 213
HaeIII	GGCC	4 cut(s)	89, 104, 231, 297
HapII	CCGG	3 cut(s)	90, 133, 144
HhaI	GCGC	4 cut(s)	101, 149, 206, 212
Hin1I	GRCGYC	2 cut(s)	147, 210
Hin1II	CATG	2 cut(s)	67, 166
Hin6I	GCGC	4 cut(s)	99, 147, 204, 210
HinP1I	GCGC	4 cut(s)	99, 147, 204, 210
HpaII	CCGG	3 cut(s)	90, 133, 144
Hpy188I	TCNGA	1 cut(s)	57
Hpy99I	CGWCG	1 cut(s)	203
HpyAV	CCTTC	1 cut(s)	232
HpyCH4V	TGCA	2 cut(s)	4, 281
HpyF10VI	GCNNNNNNNGC	3 cut(s)	101, 218, 224
Hsp92I	GRCGYC	2 cut(s)	147, 210
Hsp92II	CATG	2 cut(s)	67, 166
HspAI	GCGC	4 cut(s)	99, 147, 204, 210
KasI	GGCGCC	2 cut(s)	146, 209
Kzo9I	GATC	1 cut(s)	140
LmnI	GCTCC	1 cut(s)	92
Lsp1109I	GCAGC	2 cut(s)	37, 40
LweI	GCATC	1 cut(s)	197
MalI	GATC	1 cut(s)	142
MboI	GATC	1 cut(s)	140
MboII	GAAGA	1 cut(s)	187
MflI	RGATCY	1 cut(s)	140
MluCI	AATT	1 cut(s)	267
Mly113I	GGCGCC	2 cut(s)	147, 210
MnlI	CCTC	9 cut(s)	4, 7, 10, 71, 203, 242, 253, 306, 308
MslI	CAYNNNNRTG	1 cut(s)	161
MspI	CCGG	3 cut(s)	90, 133, 144
MvnI	CGCG	1 cut(s)	101
MwoI	GCNNNNNNNGC	3 cut(s)	101, 218, 224
NarI	GGCGCC	2 cut(s)	147, 210
NdeII	GATC	1 cut(s)	140
NlaIII	CATG	2 cut(s)	67, 166
NlaIV	GGNNCC	5 cut(s)	59, 94, 142, 148, 211
PflMI	CCANNNNNTGG	1 cut(s)	256
PkrI	GCNGC	5 cut(s)	27, 30, 47, 103, 220
PluTI	GGCGCC	2 cut(s)	150, 213
PpuMI	RGGWCCY	1 cut(s)	262
Psp5II	RGGWCCY	1 cut(s)	262
PspFI	CCCAGC	1 cut(s)	114
PspN4I	GGNNCC	5 cut(s)	59, 94, 142, 148, 211
PspPI	GGNCC	4 cut(s)	57, 87, 103, 262
PspPPI	RGGWCCY	1 cut(s)	262
PsuI	RGATCY	1 cut(s)	140
RsaI	GTAC	2 cut(s)	131, 306
RsaNI	GTAC	2 cut(s)	130, 305
RseI	CAYNNNNRTG	1 cut(s)	161
SatI	GCNGC	5 cut(s)	26, 29, 46, 102, 219
Sau3AI	GATC	1 cut(s)	140
Sau96I	GGNCC	4 cut(s)	57, 87, 103, 262
SetI	ASST	2 cut(s)	258, 267
SfaNI	GCATC	1 cut(s)	197
SfoI	GGCGCC	2 cut(s)	148, 211
SinI	GGWCC	2 cut(s)	57, 262
SmiMI	CAYNNNNRTG	1 cut(s)	161
Sse9I	AATT	1 cut(s)	267
SsiI	CCGC	6 cut(s)	8, 45, 101, 119, 216, 219
SspDI	GGCGCC	2 cut(s)	146, 209
TasI	AATT	1 cut(s)	267
TauI	GCSGC	3 cut(s)	48, 104, 221
TseI	GCWGC	2 cut(s)	25, 28
TspGWI	ACGGA	2 cut(s)	224, 325
Van91I	CCANNNNNTGG	1 cut(s)	256
VpaK11BI	GGWCC	2 cut(s)	57, 262

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.