Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0008015

Physical Location & Seq

Genomic Coordinates Reverse (-)

11199503 .. 11200384

Gene Structure 882 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1101100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGGGTAAGCCAACAGTTCTTCTGCTAACAAGGGCGTTTCTACGGTCCCAAAACGAAGAAAAGCTCACATTACCAAAACAAGCCCACTCCAACAGATCAGCCCAATACTACAACATGCATACCGAATTCTTCCGAGCAAAGCACTACCAGGTGCTTCATTATCATCGGTCGGAGATACTCAGATGCAAGAGGAGGAGACTCCGGAGAATGGAAACGGCAGTAGCGGTGGGTCCCAGACCCACTTGTGGTGGGCGGTGCCACGCGGCTCAGCTCGGTTGGGCCGTAATGTCGTCCCGAAAAGCCTGCGCCGGCAACTCCTTTACGATGCCATTCAAGGCCTTCGCAGTTGCTTCCCTCTACATCGGCTCCATCGCCACCGCGGGCGTCGCTGGCATCCGCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

135

Amino Acids

15.1

Weight (kDa)

10.97

Isoelectric Point (pI)

75.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008015)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60480 AT3G60480 AT3G60480
fragaria_vesca	FvH4_7g09680
malus_domestica	MD00G1058900.v1.1 MD07G1101100.v1.1 MD07G1101200.v1.1
prunus_persica	Prupe.2G124300_v2.0.a1 Prupe.2G124300_v2.0.a1 Prupe.2G124300_v2.0.a1 Prupe.2G124300_v2.0.a1
pyrus_communis	pycom02g18170
rosa_chinensis	RchiOBHm_Chr1g0346581
rosa_laevigata	RLG00000028791
rosa_multiflora	Rmu_sc0002640.1_g000001 Rmu_sc0002640.1_g000008 Rmu_sc0006463.1_g000018
rosa_roxburghii	Rroxscaffold_4G00308290
rosa_rugosa	Rorug01G0181400
rosa_samantha	Rh1AG200500 Rh1BG166800 Rh1CG185500 Rh1DG197600
rosa_wichuraiana	Rw1G016800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	255
AccII	CGCG	2 cut(s)	263, 380
AccIII	TCCGGA	1 cut(s)	201
AciI	CCGC	6 cut(s)	224, 253, 263, 378, 380, 397
AcsI	RAATTY	1 cut(s)	125
AcyI	GRCGYC	1 cut(s)	384
AfiI	CCNNNNNNNGG	2 cut(s)	208, 245
AgsI	TTSAA	1 cut(s)	334
AjnI	CCWGG	1 cut(s)	147
AluBI	AGCT	2 cut(s)	64, 271
AluI	AGCT	2 cut(s)	64, 271
Alw26I	GTCTC	1 cut(s)	190
Aor13HI	TCCGGA	1 cut(s)	201
AoxI	GGCC	2 cut(s)	279, 336
ApoI	RAATTY	1 cut(s)	125
AspLEI	GCGC	1 cut(s)	308
AspS9I	GGNCC	3 cut(s)	45, 230, 279
AvaII	GGWCC	2 cut(s)	45, 230
BanI	GGYRCC	1 cut(s)	255
BccI	CCATC	1 cut(s)	377
BceAI	ACGGC	2 cut(s)	231, 266
BcgI	CGANNNNNNTGC	2 cut(s)	285, 319
BciT130I	CCWGG	1 cut(s)	149
BcoDI	GTCTC	1 cut(s)	190
BisI	GCNGC	1 cut(s)	264
BlpI	GCTNAGC	1 cut(s)	267
BlsI	GCNGC	1 cut(s)	265
Bme1390I	CCNGG	1 cut(s)	149
Bme18I	GGWCC	2 cut(s)	45, 230
BmgT120I	GGNCC	3 cut(s)	45, 230, 279
BmiI	GGNNCC	5 cut(s)	47, 231, 232, 257, 367
BmrFI	CCNGG	1 cut(s)	149
BmsI	GCATC	2 cut(s)	173, 315
Bpu1102I	GCTNAGC	1 cut(s)	267
BsaHI	GRCGYC	1 cut(s)	384
BsaJI	CCNNGG	1 cut(s)	378
BsaWI	WCCGGW	1 cut(s)	201
BsaXI	ACNNNNNCTCC	2 cut(s)	350, 380
Bsc4I	CCNNNNNNNGG	2 cut(s)	208, 245
Bse118I	RCCGGY	1 cut(s)	308
BseAI	TCCGGA	1 cut(s)	201
BseBI	CCWGG	1 cut(s)	149
BseDI	CCNNGG	1 cut(s)	378
BseGI	GGATG	1 cut(s)	393
BseLI	CCNNNNNNNGG	2 cut(s)	208, 245
BseMII	CTCAG	2 cut(s)	193, 281
BseRI	GAGGAG	2 cut(s)	205, 208
Bsh1236I	CGCG	2 cut(s)	263, 380
Bsh1285I	CGRYCG	1 cut(s)	170
BshFI	GGCC	2 cut(s)	281, 338
BshNI	GGYRCC	1 cut(s)	255
BsiEI	CGRYCG	1 cut(s)	170
BsiSI	CCGG	2 cut(s)	202, 309
BslFI	GGGAC	3 cut(s)	31, 216, 277
BslI	CCNNNNNNNGG	2 cut(s)	208, 245
BsmAI	GTCTC	1 cut(s)	190
BsmFI	GGGAC	3 cut(s)	31, 216, 277
BsnI	GGCC	2 cut(s)	281, 338
Bsp13I	TCCGGA	1 cut(s)	201
Bsp143I	GATC	1 cut(s)	95
Bsp1720I	GCTNAGC	1 cut(s)	267
BspACI	CCGC	6 cut(s)	224, 253, 263, 378, 380, 397
BspANI	GGCC	2 cut(s)	281, 338
BspCNI	CTCAG	2 cut(s)	192, 280
BspEI	TCCGGA	1 cut(s)	201
BspFNI	CGCG	2 cut(s)	263, 380
BspLI	GGNNCC	5 cut(s)	47, 231, 232, 257, 367
BspT107I	GGYRCC	1 cut(s)	255
BsrFI	RCCGGY	1 cut(s)	308
BssAI	RCCGGY	1 cut(s)	308
BssECI	CCNNGG	1 cut(s)	378
BssMI	GATC	1 cut(s)	95
BssNI	GRCGYC	1 cut(s)	384
Bst2UI	CCWGG	1 cut(s)	149
Bst4CI	ACNGT	2 cut(s)	16, 45
BstACI	GRCGYC	1 cut(s)	384
BstC8I	GCNNGC	4 cut(s)	304, 310, 382, 391
BstDEI	CTNAG	2 cut(s)	179, 267
BstDSI	CCRYGG	1 cut(s)	378
BstF5I	GGATG	1 cut(s)	393
BstFNI	CGCG	2 cut(s)	263, 380
BstHHI	GCGC	1 cut(s)	308
BstKTI	GATC	1 cut(s)	98
BstMAI	GTCTC	1 cut(s)	190
BstMBI	GATC	1 cut(s)	95
BstMCI	CGRYCG	1 cut(s)	170
BstMWI	GCNNNNNNNGC	2 cut(s)	386, 390
BstNI	CCWGG	1 cut(s)	149
BstNSI	RCATGY	1 cut(s)	118
BstSCI	CCNGG	1 cut(s)	147
BstUI	CGCG	2 cut(s)	263, 380
BsuRI	GGCC	2 cut(s)	281, 338
BtgI	CCRYGG	1 cut(s)	378
BtgZI	GCGATG	1 cut(s)	355
BtsCI	GGATG	1 cut(s)	393
Cac8I	GCNNGC	4 cut(s)	304, 310, 382, 391
CfoI	GCGC	1 cut(s)	308
Cfr10I	RCCGGY	1 cut(s)	308
Cfr13I	GGNCC	3 cut(s)	45, 230, 279
Cfr42I	CCGCGG	1 cut(s)	381
CseI	GACGC	1 cut(s)	373
CsiI	ACCWGGT	1 cut(s)	147
CviAII	CATG	1 cut(s)	115
DdeI	CTNAG	2 cut(s)	179, 267
DpnI	GATC	1 cut(s)	97
DpnII	GATC	1 cut(s)	95
Eco147I	AGGCCT	1 cut(s)	338
Eco47I	GGWCC	2 cut(s)	45, 230
EcoO109I	RGGNCCY	1 cut(s)	230
EcoRI	GAATTC	1 cut(s)	125
EcoRII	CCWGG	1 cut(s)	147
EcoT22I	ATGCAT	1 cut(s)	120
FaeI	CATG	1 cut(s)	118
FaiI	YATR	2 cut(s)	116, 120
FaqI	GGGAC	3 cut(s)	31, 216, 277
FatI	CATG	1 cut(s)	114
FauI	CCCGC	1 cut(s)	373
Fnu4HI	GCNGC	1 cut(s)	264
FokI	GGATG	1 cut(s)	380
Fsp4HI	GCNGC	1 cut(s)	264
GlaI	GCGC	1 cut(s)	307
GluI	GCNGC	1 cut(s)	264
HaeIII	GGCC	2 cut(s)	281, 338
HapII	CCGG	2 cut(s)	202, 309
HgaI	GACGC	1 cut(s)	373
HhaI	GCGC	1 cut(s)	308
Hin1I	GRCGYC	1 cut(s)	384
Hin1II	CATG	1 cut(s)	118
Hin6I	GCGC	1 cut(s)	306
HinP1I	GCGC	1 cut(s)	306
HinfI	GANTC	1 cut(s)	198
HpaII	CCGG	2 cut(s)	202, 309
Hpy188I	TCNGA	3 cut(s)	134, 172, 182
Hpy188III	TCNNGA	2 cut(s)	202, 294
Hpy99I	CGWCG	1 cut(s)	389
HpyAV	CCTTC	1 cut(s)	349
HpyCH4III	ACNGT	2 cut(s)	16, 45
HpyCH4V	TGCA	2 cut(s)	118, 186
HpyF10VI	GCNNNNNNNGC	2 cut(s)	386, 390
HpyF3I	CTNAG	2 cut(s)	179, 267
Hsp92I	GRCGYC	1 cut(s)	384
Hsp92II	CATG	1 cut(s)	118
HspAI	GCGC	1 cut(s)	306
KflI	GGGWCCC	1 cut(s)	230
Kpn2I	TCCGGA	1 cut(s)	201
KroI	GCCGGC	1 cut(s)	308
KroNI	GCCGGC	1 cut(s)	310
KspI	CCGCGG	1 cut(s)	381
Kzo9I	GATC	1 cut(s)	95
LmnI	GCTCC	1 cut(s)	371
LpnPI	CCDG	7 cut(s)	134, 161, 215, 247, 316, 322, 375
LweI	GCATC	2 cut(s)	173, 315
MabI	ACCWGGT	1 cut(s)	147
MalI	GATC	1 cut(s)	97
MboI	GATC	1 cut(s)	95
MboII	GAAGA	3 cut(s)	11, 68, 121
MluCI	AATT	1 cut(s)	125
MlyI	GAGTC	1 cut(s)	192
MmeI	TCCRAC	2 cut(s)	114, 150
MnlI	CCTC	3 cut(s)	183, 186, 365
Mph1103I	ATGCAT	1 cut(s)	120
MroI	TCCGGA	1 cut(s)	201
MroNI	GCCGGC	1 cut(s)	308
MspA1I	CMGCKG	1 cut(s)	380
MspI	CCGG	2 cut(s)	202, 309
MspR9I	CCNGG	1 cut(s)	149
MvaI	CCWGG	1 cut(s)	149
MvnI	CGCG	2 cut(s)	263, 380
MwoI	GCNNNNNNNGC	2 cut(s)	386, 390
NaeI	GCCGGC	1 cut(s)	310
NdeII	GATC	1 cut(s)	95
NgoMIV	GCCGGC	1 cut(s)	308
NlaIII	CATG	1 cut(s)	118
NlaIV	GGNNCC	5 cut(s)	47, 231, 232, 257, 367
NsiI	ATGCAT	1 cut(s)	120
NspI	RCATGY	1 cut(s)	118
PceI	AGGCCT	1 cut(s)	338
PcsI	WCGNNNNNNNCGW	1 cut(s)	279
PdiI	GCCGGC	1 cut(s)	310
PkrI	GCNGC	1 cut(s)	265
PleI	GAGTC	1 cut(s)	192
PpsI	GAGTC	1 cut(s)	192
PpuMI	RGGWCCY	1 cut(s)	230
Psp5II	RGGWCCY	1 cut(s)	230
Psp6I	CCWGG	1 cut(s)	147
PspGI	CCWGG	1 cut(s)	147
PspN4I	GGNNCC	5 cut(s)	47, 231, 232, 257, 367
PspPI	GGNCC	3 cut(s)	45, 230, 279
PspPPI	RGGWCCY	1 cut(s)	230
SacII	CCGCGG	1 cut(s)	381
SatI	GCNGC	1 cut(s)	264
Sau3AI	GATC	1 cut(s)	95
Sau96I	GGNCC	3 cut(s)	45, 230, 279
SchI	GAGTC	1 cut(s)	192
ScrFI	CCNGG	1 cut(s)	149
SetI	ASST	3 cut(s)	66, 153, 273
SexAI	ACCWGGT	1 cut(s)	147
SfaNI	GCATC	2 cut(s)	173, 315
Sfr303I	CCGCGG	1 cut(s)	381
SgrBI	CCGCGG	1 cut(s)	381
SinI	GGWCC	2 cut(s)	45, 230
Sse9I	AATT	1 cut(s)	125
SseBI	AGGCCT	1 cut(s)	338
SsiI	CCGC	6 cut(s)	224, 253, 263, 378, 380, 397
StuI	AGGCCT	1 cut(s)	338
StyD4I	CCNGG	1 cut(s)	147
TaaI	ACNGT	2 cut(s)	16, 45
TaqII	GACCGA	1 cut(s)	156
TasI	AATT	1 cut(s)	125
TauI	GCSGC	1 cut(s)	266
TspDTI	ATGAA	1 cut(s)	146
VpaK11BI	GGWCC	2 cut(s)	45, 230
XapI	RAATTY	1 cut(s)	125
XceI	RCATGY	1 cut(s)	118
Zsp2I	ATGCAT	1 cut(s)	120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.