RchiOBHm_Chr1g0346581

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0008015
Physical Location & Seq
Reverse (-)
38997619 .. 38999843
2225 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ57285

Sequence Viewer

Length: 327 bp
ATGCAGGCGGAGGAGGAGGAGCAGCAGCACAAGGAAAATGGCGGCAACTATCGGACCCTCATGCCCGACACTCACTTTTTGTGGGCCGGAGCCAGCGCGGCCCAGTTCGGCTGGGCGGTAGTCTTGTACCGGAAAGGATCCGGCGCCCACTCCACTTCCATGCCTTTCAGGGCTTTCGCTGTCGCATCCCTCTTCGTCGGCGCCGGAGCCACCGCCGCCTTCGCTGGCCTCCGTGCATCTGGTATCCACAAGGTGGAGGACCTAATTCAGTTGGGTGCAAACATAAGAACTGGCCTCGGGGTACAACGGAGGGCAAGGGATGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

108

Amino Acids

11.62

Weight (kDa)

8.22

Isoelectric Point (pI)

34.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 143, 200
AccB7I CCANNNNNTGG 1 cut(s) 253
AccII CGCG 1 cut(s) 98
AciI CCGC 6 cut(s) 8, 42, 98, 116, 213, 216
AclWI GGATC 2 cut(s) 132, 145
AcyI GRCGYC 2 cut(s) 144, 201
AdeI CACNNNGTG 1 cut(s) 253
AfaI GTAC 2 cut(s) 128, 303
AfiI CCNNNNNNNGG 1 cut(s) 253
AlwI GGATC 2 cut(s) 132, 145
Ama87I CYCGRG 1 cut(s) 296
AoxI GGCC 4 cut(s) 84, 99, 226, 292
ApeKI GCWGC 2 cut(s) 22, 25
AspLEI GCGC 3 cut(s) 98, 146, 203
AspS9I GGNCC 4 cut(s) 54, 84, 100, 259
AvaI CYCGRG 1 cut(s) 296
AvaII GGWCC 2 cut(s) 54, 259
BamHI GGATCC 1 cut(s) 137
BanI GGYRCC 2 cut(s) 143, 200
BbvI GCAGC 2 cut(s) 34, 37
BciVI GTATCC 1 cut(s) 254
BfoI RGCGCY 2 cut(s) 147, 204
BfuI GTATCC 1 cut(s) 254
BglI GCCNNNNNGGC 1 cut(s) 98
BisI GCNGC 5 cut(s) 23, 26, 43, 99, 216
BlsI GCNGC 5 cut(s) 24, 27, 44, 100, 217
Bme18I GGWCC 2 cut(s) 54, 259
BmeT110I CYCGRG 1 cut(s) 296
BmgT120I GGNCC 4 cut(s) 54, 84, 100, 259
BmiI GGNNCC 6 cut(s) 56, 91, 139, 145, 202, 208
BmrI ACTGGG 1 cut(s) 97
BmsI GCATC 2 cut(s) 194, 245
BmuI ACTGGG 1 cut(s) 97
BsaHI GRCGYC 2 cut(s) 144, 201
BsaJI CCNNGG 1 cut(s) 295
BsaWI WCCGGW 1 cut(s) 129
Bsc4I CCNNNNNNNGG 1 cut(s) 253
Bse1I ACTGG 2 cut(s) 103, 295
BseDI CCNNGG 1 cut(s) 295
BseGI GGATG 2 cut(s) 185, 325
BseLI CCNNNNNNNGG 1 cut(s) 253
BseNI ACTGG 2 cut(s) 103, 295
BseRI GAGGAG 3 cut(s) 26, 29, 32
BseXI GCAGC 2 cut(s) 34, 37
BseYI CCCAGC 1 cut(s) 111
Bsh1236I CGCG 1 cut(s) 98
BshFI GGCC 4 cut(s) 86, 101, 228, 294
BshNI GGYRCC 2 cut(s) 143, 200
BsiHKCI CYCGRG 1 cut(s) 296
BsiSI CCGG 4 cut(s) 87, 130, 141, 204
BslI CCNNNNNNNGG 1 cut(s) 253
BsnI GGCC 4 cut(s) 86, 101, 228, 294
BsoBI CYCGRG 1 cut(s) 296
Bsp143I GATC 1 cut(s) 137
BspACI CCGC 6 cut(s) 8, 42, 98, 116, 213, 216
BspANI GGCC 4 cut(s) 86, 101, 228, 294
BspFNI CGCG 1 cut(s) 98
BspLI GGNNCC 6 cut(s) 56, 91, 139, 145, 202, 208
BspPI GGATC 2 cut(s) 132, 145
BspT107I GGYRCC 2 cut(s) 143, 200
BsrI ACTGG 2 cut(s) 103, 295
BssECI CCNNGG 1 cut(s) 295
BssMI GATC 1 cut(s) 137
BssNI GRCGYC 2 cut(s) 144, 201
Bst6I CTCTTC 1 cut(s) 197
BstACI GRCGYC 2 cut(s) 144, 201
BstC8I GCNNGC 3 cut(s) 6, 94, 226
BstF5I GGATG 2 cut(s) 185, 325
BstFNI CGCG 1 cut(s) 98
BstH2I RGCGCY 2 cut(s) 147, 204
BstHHI GCGC 3 cut(s) 98, 146, 203
BstKTI GATC 1 cut(s) 140
BstMBI GATC 1 cut(s) 137
BstMWI GCNNNNNNNGC 3 cut(s) 98, 215, 221
BstUI CGCG 1 cut(s) 98
BstV1I GCAGC 2 cut(s) 34, 37
BstX2I RGATCY 1 cut(s) 137
BstYI RGATCY 1 cut(s) 137
BsuI GTATCC 1 cut(s) 254
BsuRI GGCC 4 cut(s) 86, 101, 228, 294
BtsCI GGATG 2 cut(s) 185, 325
Cac8I GCNNGC 3 cut(s) 6, 94, 226
CfoI GCGC 3 cut(s) 98, 146, 203
Cfr13I GGNCC 4 cut(s) 54, 84, 100, 259
Csp6I GTAC 2 cut(s) 127, 302
CviAII CATG 2 cut(s) 61, 160
CviJI RGCY 8 cut(s) 86, 92, 101, 111, 173, 209, 228, 294
CviKI_1 RGCY 8 cut(s) 86, 92, 101, 111, 173, 209, 228, 294
CviQI GTAC 2 cut(s) 127, 302
DinI GGCGCC 2 cut(s) 145, 202
DpnI GATC 1 cut(s) 139
DpnII GATC 1 cut(s) 137
DraIII CACNNNGTG 1 cut(s) 253
Eam1104I CTCTTC 1 cut(s) 197
EarI CTCTTC 1 cut(s) 197
EciI GGCGGA 1 cut(s) 23
Eco47I GGWCC 2 cut(s) 54, 259
Eco88I CYCGRG 1 cut(s) 296
EcoO109I RGGNCCY 1 cut(s) 259
EgeI GGCGCC 2 cut(s) 145, 202
EheI GGCGCC 2 cut(s) 145, 202
FaeI CATG 2 cut(s) 64, 163
FaiI YATR 3 cut(s) 62, 161, 284
FatI CATG 2 cut(s) 60, 159
Fnu4HI GCNGC 5 cut(s) 23, 26, 43, 99, 216
FokI GGATG 1 cut(s) 172
Fsp4HI GCNGC 5 cut(s) 23, 26, 43, 99, 216
GlaI GCGC 3 cut(s) 97, 145, 202
GluI GCNGC 5 cut(s) 23, 26, 43, 99, 216
GsaI CCCAGC 1 cut(s) 115
HaeII RGCGCY 2 cut(s) 147, 204
HaeIII GGCC 4 cut(s) 86, 101, 228, 294
HapII CCGG 4 cut(s) 87, 130, 141, 204
HhaI GCGC 3 cut(s) 98, 146, 203
Hin1I GRCGYC 2 cut(s) 144, 201
Hin1II CATG 2 cut(s) 64, 163
Hin6I GCGC 3 cut(s) 96, 144, 201
HinP1I GCGC 3 cut(s) 96, 144, 201
HpaII CCGG 4 cut(s) 87, 130, 141, 204
Hpy188I TCNGA 1 cut(s) 54
Hpy99I CGWCG 1 cut(s) 200
HpyAV CCTTC 1 cut(s) 229
HpyCH4V TGCA 3 cut(s) 4, 236, 278
HpyF10VI GCNNNNNNNGC 3 cut(s) 98, 215, 221
Hsp92I GRCGYC 2 cut(s) 144, 201
Hsp92II CATG 2 cut(s) 64, 163
HspAI GCGC 3 cut(s) 96, 144, 201
KasI GGCGCC 2 cut(s) 143, 200
Kzo9I GATC 1 cut(s) 137
LmnI GCTCC 3 cut(s) 19, 89, 206
Lsp1109I GCAGC 2 cut(s) 34, 37
LweI GCATC 2 cut(s) 194, 245
MalI GATC 1 cut(s) 139
MboI GATC 1 cut(s) 137
MboII GAAGA 1 cut(s) 184
MflI RGATCY 1 cut(s) 137
MluCI AATT 1 cut(s) 264
Mly113I GGCGCC 2 cut(s) 144, 201
MnlI CCTC 9 cut(s) 4, 7, 10, 68, 200, 239, 250, 303, 305
MslI CAYNNNNRTG 1 cut(s) 158
MspI CCGG 4 cut(s) 87, 130, 141, 204
MvnI CGCG 1 cut(s) 98
MwoI GCNNNNNNNGC 3 cut(s) 98, 215, 221
NarI GGCGCC 2 cut(s) 144, 201
NdeII GATC 1 cut(s) 137
NlaIII CATG 2 cut(s) 64, 163
NlaIV GGNNCC 6 cut(s) 56, 91, 139, 145, 202, 208
PflMI CCANNNNNTGG 1 cut(s) 253
PkrI GCNGC 5 cut(s) 24, 27, 44, 100, 217
PluTI GGCGCC 2 cut(s) 147, 204
PpuMI RGGWCCY 1 cut(s) 259
Psp5II RGGWCCY 1 cut(s) 259
PspFI CCCAGC 1 cut(s) 111
PspN4I GGNNCC 6 cut(s) 56, 91, 139, 145, 202, 208
PspPI GGNCC 4 cut(s) 54, 84, 100, 259
PspPPI RGGWCCY 1 cut(s) 259
PsuI RGATCY 1 cut(s) 137
RsaI GTAC 2 cut(s) 128, 303
RsaNI GTAC 2 cut(s) 127, 302
RseI CAYNNNNRTG 1 cut(s) 158
SatI GCNGC 5 cut(s) 23, 26, 43, 99, 216
Sau3AI GATC 1 cut(s) 137
Sau96I GGNCC 4 cut(s) 54, 84, 100, 259
SetI ASST 2 cut(s) 255, 264
SfaNI GCATC 2 cut(s) 194, 245
SfoI GGCGCC 2 cut(s) 145, 202
SinI GGWCC 2 cut(s) 54, 259
SmiMI CAYNNNNRTG 1 cut(s) 158
Sse9I AATT 1 cut(s) 264
SsiI CCGC 6 cut(s) 8, 42, 98, 116, 213, 216
SspDI GGCGCC 2 cut(s) 143, 200
TasI AATT 1 cut(s) 264
TauI GCSGC 3 cut(s) 45, 101, 218
TseI GCWGC 2 cut(s) 22, 25
TspGWI ACGGA 2 cut(s) 221, 322
Van91I CCANNNNNTGG 1 cut(s) 253
VpaK11BI GGWCC 2 cut(s) 54, 259
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.