Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0008015

Physical Location & Seq

Genomic Coordinates Reverse (-)

18046542 .. 18048730

Gene Structure 2189 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G124300.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGCAGGAGGAGGAGACTCTGGAGAGTGGAGGAAGTGGAGGTCGCGGTGGGTCCCGCGCTCATTTGTGGTGGGCCGGGGCCAGCGCGGCCCAGTTGGGTTGGGCCGTGGTGTCGTCCCGGAGAGGTTGCGCCGGAAACTCCACGACGATGCCTTTCAAGGCTTTTGCCGTTGCGTCCCTCTACGTCGGCTCCATCGCCACCGCAGGCGTAGCTGGCCTGCAAGCCTCTGGAATCCGCAAGGTGGAGGATCTAGTAGAGCTGGGTGCAAACATAAGAACTGGACTTGGGGTACATCGGAGGACAAGAGACGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

105

Amino Acids

10.73

Weight (kDa)

9.18

Isoelectric Point (pI)

45.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008015)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60480 AT3G60480 AT3G60480
fragaria_vesca	FvH4_7g09680
malus_domestica	MD00G1058900.v1.1 MD07G1101100.v1.1 MD07G1101200.v1.1
prunus_persica	Prupe.2G124300_v2.0.a1 Prupe.2G124300_v2.0.a1 Prupe.2G124300_v2.0.a1 Prupe.2G124300_v2.0.a1
pyrus_communis	pycom02g18170
rosa_chinensis	RchiOBHm_Chr1g0346581
rosa_laevigata	RLG00000028791
rosa_multiflora	Rmu_sc0002640.1_g000001 Rmu_sc0002640.1_g000008 Rmu_sc0006463.1_g000018
rosa_roxburghii	Rroxscaffold_4G00308290
rosa_rugosa	Rorug01G0181400
rosa_samantha	Rh1AG200500 Rh1BG166800 Rh1CG185500 Rh1DG197600
rosa_wichuraiana	Rw1G016800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	45, 57, 86
AciI	CCGC	5 cut(s)	45, 55, 86, 201, 235
AclWI	GGATC	1 cut(s)	255
AfaI	GTAC	1 cut(s)	291
AfiI	CCNNNNNNNGG	1 cut(s)	241
AgsI	TTSAA	1 cut(s)	157
AluBI	AGCT	2 cut(s)	212, 259
AluI	AGCT	2 cut(s)	212, 259
Alw26I	GTCTC	2 cut(s)	8, 300
AlwI	GGATC	1 cut(s)	255
AoxI	GGCC	5 cut(s)	72, 78, 87, 102, 214
AspLEI	GCGC	3 cut(s)	59, 86, 131
AspS9I	GGNCC	5 cut(s)	51, 72, 78, 88, 102
AsuC2I	CCSGG	2 cut(s)	76, 118
AvaII	GGWCC	1 cut(s)	51
BccI	CCATC	1 cut(s)	200
BceAI	ACGGC	2 cut(s)	89, 152
BcnI	CCSGG	2 cut(s)	76, 118
BcoDI	GTCTC	2 cut(s)	8, 300
BfaI	CTAG	1 cut(s)	251
BglI	GCCNNNNNGGC	1 cut(s)	86
BisI	GCNGC	1 cut(s)	87
BlsI	GCNGC	1 cut(s)	88
Bme1390I	CCNGG	2 cut(s)	76, 118
Bme18I	GGWCC	1 cut(s)	51
BmgT120I	GGNCC	5 cut(s)	51, 72, 78, 88, 102
BmiI	GGNNCC	4 cut(s)	52, 53, 79, 190
BmrFI	CCNGG	2 cut(s)	76, 118
BmrI	ACTGGG	1 cut(s)	85
BmsI	GCATC	1 cut(s)	138
BmuI	ACTGGG	1 cut(s)	85
BpmI	CTGGAG	1 cut(s)	41
BpuMI	CCSGG	2 cut(s)	76, 118
BsaJI	CCNNGG	2 cut(s)	75, 105
BsaXI	ACNNNNNCTCC	2 cut(s)	173, 203
Bsc4I	CCNNNNNNNGG	1 cut(s)	241
Bse1I	ACTGG	2 cut(s)	91, 283
BseDI	CCNNGG	2 cut(s)	75, 105
BseLI	CCNNNNNNNGG	1 cut(s)	241
BseNI	ACTGG	2 cut(s)	91, 283
BseRI	GAGGAG	2 cut(s)	23, 26
BseYI	CCCAGC	1 cut(s)	259
Bsh1236I	CGCG	3 cut(s)	45, 57, 86
BshFI	GGCC	5 cut(s)	74, 80, 89, 104, 216
BsiSI	CCGG	3 cut(s)	75, 118, 132
BslFI	GGGAC	3 cut(s)	37, 100, 160
BslI	CCNNNNNNNGG	1 cut(s)	241
BsmAI	GTCTC	2 cut(s)	8, 300
BsmBI	CGTCTC	1 cut(s)	300
BsmFI	GGGAC	3 cut(s)	37, 100, 160
BsnI	GGCC	5 cut(s)	74, 80, 89, 104, 216
Bsp143I	GATC	1 cut(s)	247
BspACI	CCGC	5 cut(s)	45, 55, 86, 201, 235
BspANI	GGCC	5 cut(s)	74, 80, 89, 104, 216
BspFNI	CGCG	3 cut(s)	45, 57, 86
BspLI	GGNNCC	4 cut(s)	52, 53, 79, 190
BspPI	GGATC	1 cut(s)	255
BsrI	ACTGG	2 cut(s)	91, 283
BssECI	CCNNGG	2 cut(s)	75, 105
BssMI	GATC	1 cut(s)	247
BstC8I	GCNNGC	5 cut(s)	82, 205, 214, 218, 222
BstDSI	CCRYGG	1 cut(s)	105
BstFNI	CGCG	3 cut(s)	45, 57, 86
BstHHI	GCGC	3 cut(s)	59, 86, 131
BstKTI	GATC	1 cut(s)	250
BstMAI	GTCTC	2 cut(s)	8, 300
BstMBI	GATC	1 cut(s)	247
BstMWI	GCNNNNNNNGC	3 cut(s)	86, 209, 213
BstSCI	CCNGG	2 cut(s)	74, 116
BstUI	CGCG	3 cut(s)	45, 57, 86
BstX2I	RGATCY	1 cut(s)	247
BstYI	RGATCY	1 cut(s)	247
BsuRI	GGCC	5 cut(s)	74, 80, 89, 104, 216
BtgI	CCRYGG	1 cut(s)	105
BtgZI	GCGATG	1 cut(s)	178
Cac8I	GCNNGC	5 cut(s)	82, 205, 214, 218, 222
CfoI	GCGC	3 cut(s)	59, 86, 131
Cfr13I	GGNCC	5 cut(s)	51, 72, 78, 88, 102
CseI	GACGC	1 cut(s)	162
Csp6I	GTAC	1 cut(s)	290
CviQI	GTAC	1 cut(s)	290
DpnI	GATC	1 cut(s)	249
DpnII	GATC	1 cut(s)	247
Eco47I	GGWCC	1 cut(s)	51
EcoO109I	RGGNCCY	1 cut(s)	51
Esp3I	CGTCTC	1 cut(s)	300
FaiI	YATR	1 cut(s)	272
FaqI	GGGAC	3 cut(s)	37, 100, 160
FauI	CCCGC	1 cut(s)	62
Fnu4HI	GCNGC	1 cut(s)	87
Fsp4HI	GCNGC	1 cut(s)	87
FspBI	CTAG	1 cut(s)	251
GlaI	GCGC	3 cut(s)	58, 85, 130
GluI	GCNGC	1 cut(s)	87
GsaI	CCCAGC	1 cut(s)	263
GsuI	CTGGAG	1 cut(s)	41
HaeIII	GGCC	5 cut(s)	74, 80, 89, 104, 216
HapII	CCGG	3 cut(s)	75, 118, 132
HgaI	GACGC	1 cut(s)	162
HhaI	GCGC	3 cut(s)	59, 86, 131
Hin6I	GCGC	3 cut(s)	57, 84, 129
HinP1I	GCGC	3 cut(s)	57, 84, 129
HinfI	GANTC	2 cut(s)	16, 231
HpaII	CCGG	3 cut(s)	75, 118, 132
Hpy188I	TCNGA	1 cut(s)	297
Hpy188III	TCNNGA	2 cut(s)	20, 228
Hpy99I	CGWCG	2 cut(s)	148, 188
HpyCH4IV	ACGT	1 cut(s)	183
HpyCH4V	TGCA	3 cut(s)	4, 220, 266
HpyF10VI	GCNNNNNNNGC	3 cut(s)	86, 209, 213
HpySE526I	ACGT	1 cut(s)	183
HspAI	GCGC	3 cut(s)	57, 84, 129
KflI	GGGWCCC	1 cut(s)	51
Kzo9I	GATC	1 cut(s)	247
LmnI	GCTCC	1 cut(s)	194
LweI	GCATC	1 cut(s)	138
MaeI	CTAG	1 cut(s)	251
MaeII	ACGT	1 cut(s)	183
MalI	GATC	1 cut(s)	249
MboI	GATC	1 cut(s)	247
MflI	RGATCY	1 cut(s)	247
MlyI	GAGTC	1 cut(s)	10
MnlI	CCTC	8 cut(s)	4, 23, 32, 116, 188, 235, 238, 291
MslI	CAYNNNNRTG	1 cut(s)	146
MspI	CCGG	3 cut(s)	75, 118, 132
MspR9I	CCNGG	2 cut(s)	76, 118
MvnI	CGCG	3 cut(s)	45, 57, 86
MwoI	GCNNNNNNNGC	3 cut(s)	86, 209, 213
NciI	CCSGG	2 cut(s)	76, 118
NdeII	GATC	1 cut(s)	247
NlaIV	GGNNCC	4 cut(s)	52, 53, 79, 190
PfeI	GAWTC	1 cut(s)	231
PfoI	TCCNGGA	1 cut(s)	116
PkrI	GCNGC	1 cut(s)	88
PleI	GAGTC	1 cut(s)	10
PpsI	GAGTC	1 cut(s)	10
PpuMI	RGGWCCY	1 cut(s)	51
Psp5II	RGGWCCY	1 cut(s)	51
PspFI	CCCAGC	1 cut(s)	259
PspN4I	GGNNCC	4 cut(s)	52, 53, 79, 190
PspPI	GGNCC	5 cut(s)	51, 72, 78, 88, 102
PspPPI	RGGWCCY	1 cut(s)	51
PsuI	RGATCY	1 cut(s)	247
RsaI	GTAC	1 cut(s)	291
RsaNI	GTAC	1 cut(s)	290
RseI	CAYNNNNRTG	1 cut(s)	146
SatI	GCNGC	1 cut(s)	87
Sau3AI	GATC	1 cut(s)	247
Sau96I	GGNCC	5 cut(s)	51, 72, 78, 88, 102
SchI	GAGTC	1 cut(s)	10
ScrFI	CCNGG	2 cut(s)	76, 118
SetI	ASST	6 cut(s)	43, 127, 186, 214, 243, 261
SfaNI	GCATC	1 cut(s)	138
SfiI	GGCCNNNNNGGCC	1 cut(s)	86
SinI	GGWCC	1 cut(s)	51
SmiMI	CAYNNNNRTG	1 cut(s)	146
SsiI	CCGC	5 cut(s)	45, 55, 86, 201, 235
SspMI	CTAG	1 cut(s)	251
StyD4I	CCNGG	2 cut(s)	74, 116
TaiI	ACGT	1 cut(s)	186
TauI	GCSGC	1 cut(s)	89
TfiI	GAWTC	1 cut(s)	231
VpaK11BI	GGWCC	1 cut(s)	51
XspI	CTAG	1 cut(s)	251

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.