Rh1BG166800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0008015
Physical Location & Seq
Reverse (-)
26754844 .. 26756738
1895 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG166800.1

Sequence Viewer

Length: 324 bp
ATGCAGGCGGAGGAGGAGCAGCAGCAAAAGGAAAATGGCGGCAACTATCGGACCCTCATGCCCGACACTCACTTTTTGTGGGCCGGAGCCAGCGCGGCCCAGTTCGGCTGGGCGGTAGTCTTGTACCGGAAAGGATCCGGCGCCCACTCCACTTCTATGCCTTTCAGGGCTTTCGCTGTCGCATCCCTCTTCGTCGGCGCCGGCGCCACCGCCGCCTTCGCTGGCCTCCGTGCTTCTGGTATCCACAAGGTGGAGGACCTAATTCAGTTGGGTGCAAACATAAGAACTGGCCTCGGGGTACAACGGAGGGCAAGGGATGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

107

Amino Acids

11.48

Weight (kDa)

9.39

Isoelectric Point (pI)

30.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 140, 197, 203
AccB7I CCANNNNNTGG 1 cut(s) 250
AccII CGCG 1 cut(s) 95
AciI CCGC 6 cut(s) 8, 39, 95, 113, 210, 213
AclWI GGATC 2 cut(s) 129, 142
AcyI GRCGYC 3 cut(s) 141, 198, 204
AdeI CACNNNGTG 1 cut(s) 250
AfaI GTAC 2 cut(s) 125, 300
AfiI CCNNNNNNNGG 1 cut(s) 250
AlwI GGATC 2 cut(s) 129, 142
Ama87I CYCGRG 1 cut(s) 293
AoxI GGCC 4 cut(s) 81, 96, 223, 289
ApeKI GCWGC 2 cut(s) 19, 22
AspLEI GCGC 4 cut(s) 95, 143, 200, 206
AspS9I GGNCC 4 cut(s) 51, 81, 97, 256
AvaI CYCGRG 1 cut(s) 293
AvaII GGWCC 2 cut(s) 51, 256
BamHI GGATCC 1 cut(s) 134
BanI GGYRCC 3 cut(s) 140, 197, 203
BbvI GCAGC 2 cut(s) 31, 34
BciVI GTATCC 1 cut(s) 251
BfoI RGCGCY 3 cut(s) 144, 201, 207
BfuI GTATCC 1 cut(s) 251
BglI GCCNNNNNGGC 1 cut(s) 95
BisI GCNGC 5 cut(s) 20, 23, 40, 96, 213
BlsI GCNGC 5 cut(s) 21, 24, 41, 97, 214
Bme18I GGWCC 2 cut(s) 51, 256
BmeT110I CYCGRG 1 cut(s) 293
BmgT120I GGNCC 4 cut(s) 51, 81, 97, 256
BmiI GGNNCC 6 cut(s) 53, 88, 136, 142, 199, 205
BmrI ACTGGG 1 cut(s) 94
BmsI GCATC 1 cut(s) 191
BmuI ACTGGG 1 cut(s) 94
BsaHI GRCGYC 3 cut(s) 141, 198, 204
BsaJI CCNNGG 1 cut(s) 292
BsaWI WCCGGW 1 cut(s) 126
Bsc4I CCNNNNNNNGG 1 cut(s) 250
Bse118I RCCGGY 1 cut(s) 200
Bse1I ACTGG 2 cut(s) 100, 292
BseDI CCNNGG 1 cut(s) 292
BseGI GGATG 2 cut(s) 182, 322
BseLI CCNNNNNNNGG 1 cut(s) 250
BseNI ACTGG 2 cut(s) 100, 292
BseRI GAGGAG 2 cut(s) 26, 29
BseXI GCAGC 2 cut(s) 31, 34
BseYI CCCAGC 1 cut(s) 108
Bsh1236I CGCG 1 cut(s) 95
BshFI GGCC 4 cut(s) 83, 98, 225, 291
BshNI GGYRCC 3 cut(s) 140, 197, 203
BsiHKCI CYCGRG 1 cut(s) 293
BsiSI CCGG 4 cut(s) 84, 127, 138, 201
BslI CCNNNNNNNGG 1 cut(s) 250
BsnI GGCC 4 cut(s) 83, 98, 225, 291
BsoBI CYCGRG 1 cut(s) 293
Bsp143I GATC 1 cut(s) 134
BspACI CCGC 6 cut(s) 8, 39, 95, 113, 210, 213
BspANI GGCC 4 cut(s) 83, 98, 225, 291
BspFNI CGCG 1 cut(s) 95
BspLI GGNNCC 6 cut(s) 53, 88, 136, 142, 199, 205
BspPI GGATC 2 cut(s) 129, 142
BspT107I GGYRCC 3 cut(s) 140, 197, 203
BsrFI RCCGGY 1 cut(s) 200
BsrI ACTGG 2 cut(s) 100, 292
BssAI RCCGGY 1 cut(s) 200
BssECI CCNNGG 1 cut(s) 292
BssMI GATC 1 cut(s) 134
BssNI GRCGYC 3 cut(s) 141, 198, 204
Bst6I CTCTTC 1 cut(s) 194
BstACI GRCGYC 3 cut(s) 141, 198, 204
BstC8I GCNNGC 4 cut(s) 6, 91, 202, 223
BstF5I GGATG 2 cut(s) 182, 322
BstFNI CGCG 1 cut(s) 95
BstH2I RGCGCY 3 cut(s) 144, 201, 207
BstHHI GCGC 4 cut(s) 95, 143, 200, 206
BstKTI GATC 1 cut(s) 137
BstMBI GATC 1 cut(s) 134
BstMWI GCNNNNNNNGC 3 cut(s) 95, 212, 218
BstUI CGCG 1 cut(s) 95
BstV1I GCAGC 2 cut(s) 31, 34
BstX2I RGATCY 1 cut(s) 134
BstYI RGATCY 1 cut(s) 134
BsuI GTATCC 1 cut(s) 251
BsuRI GGCC 4 cut(s) 83, 98, 225, 291
BtsCI GGATG 2 cut(s) 182, 322
Cac8I GCNNGC 4 cut(s) 6, 91, 202, 223
CfoI GCGC 4 cut(s) 95, 143, 200, 206
Cfr10I RCCGGY 1 cut(s) 200
Cfr13I GGNCC 4 cut(s) 51, 81, 97, 256
Csp6I GTAC 2 cut(s) 124, 299
CviAII CATG 1 cut(s) 58
CviJI RGCY 7 cut(s) 83, 89, 98, 108, 170, 225, 291
CviKI_1 RGCY 7 cut(s) 83, 89, 98, 108, 170, 225, 291
CviQI GTAC 2 cut(s) 124, 299
DinI GGCGCC 3 cut(s) 142, 199, 205
DpnI GATC 1 cut(s) 136
DpnII GATC 1 cut(s) 134
DraIII CACNNNGTG 1 cut(s) 250
Eam1104I CTCTTC 1 cut(s) 194
EarI CTCTTC 1 cut(s) 194
EciI GGCGGA 1 cut(s) 23
Eco47I GGWCC 2 cut(s) 51, 256
Eco88I CYCGRG 1 cut(s) 293
EcoO109I RGGNCCY 1 cut(s) 256
EgeI GGCGCC 3 cut(s) 142, 199, 205
EheI GGCGCC 3 cut(s) 142, 199, 205
FaeI CATG 1 cut(s) 61
FaiI YATR 3 cut(s) 59, 158, 281
FatI CATG 1 cut(s) 57
Fnu4HI GCNGC 5 cut(s) 20, 23, 40, 96, 213
FokI GGATG 1 cut(s) 169
Fsp4HI GCNGC 5 cut(s) 20, 23, 40, 96, 213
GlaI GCGC 4 cut(s) 94, 142, 199, 205
GluI GCNGC 5 cut(s) 20, 23, 40, 96, 213
GsaI CCCAGC 1 cut(s) 112
HaeII RGCGCY 3 cut(s) 144, 201, 207
HaeIII GGCC 4 cut(s) 83, 98, 225, 291
HapII CCGG 4 cut(s) 84, 127, 138, 201
HhaI GCGC 4 cut(s) 95, 143, 200, 206
Hin1I GRCGYC 3 cut(s) 141, 198, 204
Hin1II CATG 1 cut(s) 61
Hin6I GCGC 4 cut(s) 93, 141, 198, 204
HinP1I GCGC 4 cut(s) 93, 141, 198, 204
HpaII CCGG 4 cut(s) 84, 127, 138, 201
Hpy188I TCNGA 1 cut(s) 51
Hpy99I CGWCG 1 cut(s) 197
HpyAV CCTTC 1 cut(s) 226
HpyCH4V TGCA 2 cut(s) 4, 275
HpyF10VI GCNNNNNNNGC 3 cut(s) 95, 212, 218
Hsp92I GRCGYC 3 cut(s) 141, 198, 204
Hsp92II CATG 1 cut(s) 61
HspAI GCGC 4 cut(s) 93, 141, 198, 204
KasI GGCGCC 3 cut(s) 140, 197, 203
KroI GCCGGC 1 cut(s) 200
KroNI GCCGGC 1 cut(s) 202
Kzo9I GATC 1 cut(s) 134
LmnI GCTCC 2 cut(s) 16, 86
Lsp1109I GCAGC 2 cut(s) 31, 34
LweI GCATC 1 cut(s) 191
MalI GATC 1 cut(s) 136
MboI GATC 1 cut(s) 134
MboII GAAGA 1 cut(s) 181
MflI RGATCY 1 cut(s) 134
MluCI AATT 1 cut(s) 261
Mly113I GGCGCC 3 cut(s) 141, 198, 204
MnlI CCTC 8 cut(s) 4, 7, 65, 197, 236, 247, 300, 302
MreI CGCCGGCG 1 cut(s) 200
MroNI GCCGGC 1 cut(s) 200
MslI CAYNNNNRTG 1 cut(s) 155
MspI CCGG 4 cut(s) 84, 127, 138, 201
MvnI CGCG 1 cut(s) 95
MwoI GCNNNNNNNGC 3 cut(s) 95, 212, 218
NaeI GCCGGC 1 cut(s) 202
NarI GGCGCC 3 cut(s) 141, 198, 204
NdeII GATC 1 cut(s) 134
NgoMIV GCCGGC 1 cut(s) 200
NlaIII CATG 1 cut(s) 61
NlaIV GGNNCC 6 cut(s) 53, 88, 136, 142, 199, 205
PdiI GCCGGC 1 cut(s) 202
PflMI CCANNNNNTGG 1 cut(s) 250
PkrI GCNGC 5 cut(s) 21, 24, 41, 97, 214
PluTI GGCGCC 3 cut(s) 144, 201, 207
PpuMI RGGWCCY 1 cut(s) 256
Psp5II RGGWCCY 1 cut(s) 256
PspFI CCCAGC 1 cut(s) 108
PspN4I GGNNCC 6 cut(s) 53, 88, 136, 142, 199, 205
PspPI GGNCC 4 cut(s) 51, 81, 97, 256
PspPPI RGGWCCY 1 cut(s) 256
PsuI RGATCY 1 cut(s) 134
RsaI GTAC 2 cut(s) 125, 300
RsaNI GTAC 2 cut(s) 124, 299
RseI CAYNNNNRTG 1 cut(s) 155
SatI GCNGC 5 cut(s) 20, 23, 40, 96, 213
Sau3AI GATC 1 cut(s) 134
Sau96I GGNCC 4 cut(s) 51, 81, 97, 256
SetI ASST 2 cut(s) 252, 261
SfaNI GCATC 1 cut(s) 191
SfoI GGCGCC 3 cut(s) 142, 199, 205
SgrAI CRCCGGYG 1 cut(s) 200
SinI GGWCC 2 cut(s) 51, 256
SmiMI CAYNNNNRTG 1 cut(s) 155
Sse9I AATT 1 cut(s) 261
SsiI CCGC 6 cut(s) 8, 39, 95, 113, 210, 213
SspDI GGCGCC 3 cut(s) 140, 197, 203
TasI AATT 1 cut(s) 261
TauI GCSGC 3 cut(s) 42, 98, 215
TseI GCWGC 2 cut(s) 19, 22
TspGWI ACGGA 2 cut(s) 218, 319
Van91I CCANNNNNTGG 1 cut(s) 250
VpaK11BI GGWCC 2 cut(s) 51, 256
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.