Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0008015

Physical Location & Seq

Genomic Coordinates Reverse (-)

11218821 .. 11224058

Gene Structure 5238 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1101200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

ATGGAAACGGCAGTAGCGGTGGGTCCCAGACCCACTTGTGGTGGGCGGTGCCACGCGGCTCAGCTCGGTTGGGCCGTAATGTCGTCCCGAAAAGCCTGCGCCGGCAACTCCTTTACGATGCCATTCAAGGCCTTCGCAGTTGCTTCCCTCTACATCGGCTCCATCGCCACCGCGGGCGTCGCTGGCATCCGCAAGGCGGGGGATCTCGTAGAGCTTGGTGCAAACCTAAGAACTGGACTTGGGGTACCTCGGAGGACGACGAGGGATGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

91

Amino Acids

9.25

Weight (kDa)

10.06

Isoelectric Point (pI)

40.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008015)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60480 AT3G60480 AT3G60480
fragaria_vesca	FvH4_7g09680
malus_domestica	MD00G1058900.v1.1 MD07G1101100.v1.1 MD07G1101200.v1.1
prunus_persica	Prupe.2G124300_v2.0.a1 Prupe.2G124300_v2.0.a1 Prupe.2G124300_v2.0.a1 Prupe.2G124300_v2.0.a1
pyrus_communis	pycom02g18170
rosa_chinensis	RchiOBHm_Chr1g0346581
rosa_laevigata	RLG00000028791
rosa_multiflora	Rmu_sc0002640.1_g000001 Rmu_sc0002640.1_g000008 Rmu_sc0006463.1_g000018
rosa_roxburghii	Rroxscaffold_4G00308290
rosa_rugosa	Rorug01G0181400
rosa_samantha	Rh1AG200500 Rh1BG166800 Rh1CG185500 Rh1DG197600
rosa_wichuraiana	Rw1G016800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	244
AccB1I	GGYRCC	2 cut(s)	48, 244
AccII	CGCG	2 cut(s)	56, 173
AciI	CCGC	7 cut(s)	17, 46, 56, 171, 173, 190, 197
AclWI	GGATC	1 cut(s)	210
AcyI	GRCGYC	1 cut(s)	177
AfaI	GTAC	1 cut(s)	246
AfiI	CCNNNNNNNGG	2 cut(s)	38, 196
AgsI	TTSAA	1 cut(s)	127
AluBI	AGCT	2 cut(s)	64, 214
AluI	AGCT	2 cut(s)	64, 214
AlwI	GGATC	1 cut(s)	210
AoxI	GGCC	2 cut(s)	72, 129
Asp718I	GGTACC	1 cut(s)	244
AspLEI	GCGC	1 cut(s)	101
AspS9I	GGNCC	2 cut(s)	23, 72
AvaII	GGWCC	1 cut(s)	23
BanI	GGYRCC	2 cut(s)	48, 244
BccI	CCATC	1 cut(s)	170
BceAI	ACGGC	2 cut(s)	24, 59
BcgI	CGANNNNNNTGC	2 cut(s)	78, 112
BisI	GCNGC	1 cut(s)	57
BlpI	GCTNAGC	1 cut(s)	60
BlsI	GCNGC	1 cut(s)	58
Bme18I	GGWCC	1 cut(s)	23
BmgT120I	GGNCC	2 cut(s)	23, 72
BmiI	GGNNCC	5 cut(s)	24, 25, 50, 160, 246
BmsI	GCATC	2 cut(s)	108, 195
Bpu1102I	GCTNAGC	1 cut(s)	60
BsaHI	GRCGYC	1 cut(s)	177
BsaJI	CCNNGG	2 cut(s)	171, 248
BsaXI	ACNNNNNCTCC	2 cut(s)	143, 173
Bsc4I	CCNNNNNNNGG	2 cut(s)	38, 196
Bse118I	RCCGGY	1 cut(s)	101
Bse1I	ACTGG	1 cut(s)	238
BseDI	CCNNGG	2 cut(s)	171, 248
BseGI	GGATG	2 cut(s)	186, 271
BseLI	CCNNNNNNNGG	2 cut(s)	38, 196
BseMII	CTCAG	1 cut(s)	74
BseNI	ACTGG	1 cut(s)	238
Bsh1236I	CGCG	2 cut(s)	56, 173
BshFI	GGCC	2 cut(s)	74, 131
BshNI	GGYRCC	2 cut(s)	48, 244
BsiSI	CCGG	1 cut(s)	102
BslFI	GGGAC	2 cut(s)	9, 70
BslI	CCNNNNNNNGG	2 cut(s)	38, 196
BsmFI	GGGAC	2 cut(s)	9, 70
BsnI	GGCC	2 cut(s)	74, 131
Bsp143I	GATC	1 cut(s)	202
Bsp1720I	GCTNAGC	1 cut(s)	60
BspACI	CCGC	7 cut(s)	17, 46, 56, 171, 173, 190, 197
BspANI	GGCC	2 cut(s)	74, 131
BspCNI	CTCAG	1 cut(s)	73
BspFNI	CGCG	2 cut(s)	56, 173
BspLI	GGNNCC	5 cut(s)	24, 25, 50, 160, 246
BspPI	GGATC	1 cut(s)	210
BspT107I	GGYRCC	2 cut(s)	48, 244
BsrFI	RCCGGY	1 cut(s)	101
BsrI	ACTGG	1 cut(s)	238
BssAI	RCCGGY	1 cut(s)	101
BssECI	CCNNGG	2 cut(s)	171, 248
BssMI	GATC	1 cut(s)	202
BssNI	GRCGYC	1 cut(s)	177
BstACI	GRCGYC	1 cut(s)	177
BstC8I	GCNNGC	4 cut(s)	97, 103, 175, 184
BstDEI	CTNAG	2 cut(s)	60, 227
BstDSI	CCRYGG	1 cut(s)	171
BstF5I	GGATG	2 cut(s)	186, 271
BstFNI	CGCG	2 cut(s)	56, 173
BstHHI	GCGC	1 cut(s)	101
BstKTI	GATC	1 cut(s)	205
BstMBI	GATC	1 cut(s)	202
BstMWI	GCNNNNNNNGC	2 cut(s)	179, 183
BstUI	CGCG	2 cut(s)	56, 173
BstX2I	RGATCY	1 cut(s)	202
BstYI	RGATCY	1 cut(s)	202
BsuRI	GGCC	2 cut(s)	74, 131
BtgI	CCRYGG	1 cut(s)	171
BtgZI	GCGATG	1 cut(s)	148
BtsCI	GGATG	2 cut(s)	186, 271
Cac8I	GCNNGC	4 cut(s)	97, 103, 175, 184
CfoI	GCGC	1 cut(s)	101
Cfr10I	RCCGGY	1 cut(s)	101
Cfr13I	GGNCC	2 cut(s)	23, 72
Cfr42I	CCGCGG	1 cut(s)	174
CseI	GACGC	1 cut(s)	166
Csp6I	GTAC	1 cut(s)	245
CviJI	RGCY	7 cut(s)	59, 64, 74, 95, 131, 159, 214
CviKI_1	RGCY	7 cut(s)	59, 64, 74, 95, 131, 159, 214
CviQI	GTAC	1 cut(s)	245
DdeI	CTNAG	2 cut(s)	60, 227
DpnI	GATC	1 cut(s)	204
DpnII	GATC	1 cut(s)	202
Eco147I	AGGCCT	1 cut(s)	131
Eco47I	GGWCC	1 cut(s)	23
EcoO109I	RGGNCCY	1 cut(s)	23
FaqI	GGGAC	2 cut(s)	9, 70
FauI	CCCGC	2 cut(s)	166, 190
Fnu4HI	GCNGC	1 cut(s)	57
FokI	GGATG	1 cut(s)	173
Fsp4HI	GCNGC	1 cut(s)	57
GlaI	GCGC	1 cut(s)	100
GluI	GCNGC	1 cut(s)	57
HaeIII	GGCC	2 cut(s)	74, 131
HapII	CCGG	1 cut(s)	102
HgaI	GACGC	1 cut(s)	166
HhaI	GCGC	1 cut(s)	101
Hin1I	GRCGYC	1 cut(s)	177
Hin6I	GCGC	1 cut(s)	99
HinP1I	GCGC	1 cut(s)	99
HpaII	CCGG	1 cut(s)	102
Hpy188I	TCNGA	1 cut(s)	252
Hpy188III	TCNNGA	1 cut(s)	87
Hpy99I	CGWCG	2 cut(s)	182, 262
HpyAV	CCTTC	1 cut(s)	142
HpyCH4V	TGCA	1 cut(s)	221
HpyF10VI	GCNNNNNNNGC	2 cut(s)	179, 183
HpyF3I	CTNAG	2 cut(s)	60, 227
Hsp92I	GRCGYC	1 cut(s)	177
HspAI	GCGC	1 cut(s)	99
KflI	GGGWCCC	1 cut(s)	23
KpnI	GGTACC	1 cut(s)	248
KroI	GCCGGC	1 cut(s)	101
KroNI	GCCGGC	1 cut(s)	103
KspI	CCGCGG	1 cut(s)	174
Kzo9I	GATC	1 cut(s)	202
LmnI	GCTCC	1 cut(s)	164
LpnPI	CCDG	5 cut(s)	40, 109, 115, 168, 219
LweI	GCATC	2 cut(s)	108, 195
MalI	GATC	1 cut(s)	204
MboI	GATC	1 cut(s)	202
MflI	RGATCY	1 cut(s)	202
MnlI	CCTC	4 cut(s)	158, 246, 255, 258
MroNI	GCCGGC	1 cut(s)	101
MspA1I	CMGCKG	1 cut(s)	173
MspI	CCGG	1 cut(s)	102
MvnI	CGCG	2 cut(s)	56, 173
MwoI	GCNNNNNNNGC	2 cut(s)	179, 183
NaeI	GCCGGC	1 cut(s)	103
NdeII	GATC	1 cut(s)	202
NgoMIV	GCCGGC	1 cut(s)	101
NlaIV	GGNNCC	5 cut(s)	24, 25, 50, 160, 246
PceI	AGGCCT	1 cut(s)	131
PcsI	WCGNNNNNNNCGW	1 cut(s)	72
PdiI	GCCGGC	1 cut(s)	103
PkrI	GCNGC	1 cut(s)	58
PpuMI	RGGWCCY	1 cut(s)	23
Psp5II	RGGWCCY	1 cut(s)	23
PspN4I	GGNNCC	5 cut(s)	24, 25, 50, 160, 246
PspPI	GGNCC	2 cut(s)	23, 72
PspPPI	RGGWCCY	1 cut(s)	23
PsuI	RGATCY	1 cut(s)	202
RsaI	GTAC	1 cut(s)	246
RsaNI	GTAC	1 cut(s)	245
SacII	CCGCGG	1 cut(s)	174
SatI	GCNGC	1 cut(s)	57
Sau3AI	GATC	1 cut(s)	202
Sau96I	GGNCC	2 cut(s)	23, 72
SetI	ASST	4 cut(s)	66, 216, 228, 250
SfaNI	GCATC	2 cut(s)	108, 195
Sfr303I	CCGCGG	1 cut(s)	174
SgrBI	CCGCGG	1 cut(s)	174
SinI	GGWCC	1 cut(s)	23
SseBI	AGGCCT	1 cut(s)	131
SsiI	CCGC	7 cut(s)	17, 46, 56, 171, 173, 190, 197
StuI	AGGCCT	1 cut(s)	131
TauI	GCSGC	1 cut(s)	59
VpaK11BI	GGWCC	1 cut(s)	23

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.