Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0008015

Physical Location & Seq

Genomic Coordinates Reverse (-)

9268192 .. 9270805

Gene Structure 2614 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g09680.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGCAGGCGGAGGAGGACAAGGCAAATGGCGGCAACTACTACCGGACCCTCGTACCCGACTCTCACTTTATATGGGCCGGAGCCAGCGGGGCCCAGTTCACCTGGGCGGTAGTCCTGTACCGGAAAGGTTCCGGCCCCCACTCCACTTCCATGCCATTCCGGGCTTTCCTTGTCGCTTCCCTAATCGTCGGCGCCGGCGCCACCGCCGCCTTTGCTGGCATACGTGCCTCCGGTATCCACAAGGTGGAGGACCTAATTCGGTTGGGTGCAAACATAAGAACTGGCCTCGGTGTGCAACGGAGGGCAAGGGATGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

106

Amino Acids

11.23

Weight (kDa)

9.98

Isoelectric Point (pI)

18.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008015)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60480 AT3G60480 AT3G60480
fragaria_vesca	FvH4_7g09680
malus_domestica	MD00G1058900.v1.1 MD07G1101100.v1.1 MD07G1101200.v1.1
prunus_persica	Prupe.2G124300_v2.0.a1 Prupe.2G124300_v2.0.a1 Prupe.2G124300_v2.0.a1 Prupe.2G124300_v2.0.a1
pyrus_communis	pycom02g18170
rosa_chinensis	RchiOBHm_Chr1g0346581
rosa_laevigata	RLG00000028791
rosa_multiflora	Rmu_sc0002640.1_g000001 Rmu_sc0002640.1_g000008 Rmu_sc0006463.1_g000018
rosa_roxburghii	Rroxscaffold_4G00308290
rosa_rugosa	Rorug01G0181400
rosa_samantha	Rh1AG200500 Rh1BG166800 Rh1CG185500 Rh1DG197600
rosa_wichuraiana	Rw1G016800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	191, 197
AccB7I	CCANNNNNTGG	1 cut(s)	244
AciI	CCGC	6 cut(s)	8, 30, 87, 107, 204, 207
AcyI	GRCGYC	2 cut(s)	192, 198
AdeI	CACNNNGTG	1 cut(s)	244
AfaI	GTAC	2 cut(s)	54, 119
AfiI	CCNNNNNNNGG	1 cut(s)	244
AjnI	CCWGG	1 cut(s)	101
AoxI	GGCC	4 cut(s)	75, 90, 133, 283
ApaI	GGGCCC	1 cut(s)	94
AspLEI	GCGC	2 cut(s)	194, 200
AspS9I	GGNCC	6 cut(s)	45, 75, 90, 91, 134, 250
AsuC2I	CCSGG	1 cut(s)	161
AsuHPI	GGTGA	1 cut(s)	91
AvaII	GGWCC	2 cut(s)	45, 250
BaeGI	GKGCMC	1 cut(s)	94
BaeI	ACNNNNGTAYC	2 cut(s)	36, 69
BanI	GGYRCC	2 cut(s)	191, 197
BanII	GRGCYC	1 cut(s)	94
BciT130I	CCWGG	1 cut(s)	103
BciVI	GTATCC	1 cut(s)	245
BcnI	CCSGG	1 cut(s)	161
BfoI	RGCGCY	2 cut(s)	195, 201
BfuI	GTATCC	1 cut(s)	245
BglI	GCCNNNNNGGC	1 cut(s)	89
BisI	GCNGC	2 cut(s)	31, 207
BlsI	GCNGC	2 cut(s)	32, 208
Bme1390I	CCNGG	2 cut(s)	103, 161
Bme18I	GGWCC	2 cut(s)	45, 250
BmgT120I	GGNCC	6 cut(s)	45, 75, 90, 91, 134, 250
BmiI	GGNNCC	8 cut(s)	47, 82, 91, 92, 130, 136, 193, 199
BmrFI	CCNGG	2 cut(s)	103, 161
BmrI	ACTGGG	1 cut(s)	88
BmuI	ACTGGG	1 cut(s)	88
BpuMI	CCSGG	1 cut(s)	161
BsaAI	YACGTR	1 cut(s)	224
BsaHI	GRCGYC	2 cut(s)	192, 198
BsaJI	CCNNGG	2 cut(s)	102, 286
BsaWI	WCCGGW	3 cut(s)	42, 120, 230
Bsc4I	CCNNNNNNNGG	1 cut(s)	244
Bse118I	RCCGGY	1 cut(s)	194
Bse1I	ACTGG	2 cut(s)	94, 286
BseBI	CCWGG	1 cut(s)	103
BseDI	CCNNGG	2 cut(s)	102, 286
BseGI	GGATG	1 cut(s)	316
BseLI	CCNNNNNNNGG	1 cut(s)	244
BseNI	ACTGG	2 cut(s)	94, 286
BseRI	GAGGAG	1 cut(s)	26
BseSI	GKGCMC	1 cut(s)	94
BshFI	GGCC	4 cut(s)	77, 92, 135, 285
BshNI	GGYRCC	2 cut(s)	191, 197
BsiSI	CCGG	7 cut(s)	43, 78, 121, 132, 160, 195, 231
BslI	CCNNNNNNNGG	1 cut(s)	244
BsnI	GGCC	4 cut(s)	77, 92, 135, 285
Bsp120I	GGGCCC	1 cut(s)	90
Bsp1286I	GDGCHC	1 cut(s)	94
BspACI	CCGC	6 cut(s)	8, 30, 87, 107, 204, 207
BspANI	GGCC	4 cut(s)	77, 92, 135, 285
BspLI	GGNNCC	8 cut(s)	47, 82, 91, 92, 130, 136, 193, 199
BspT107I	GGYRCC	2 cut(s)	191, 197
BsrFI	RCCGGY	1 cut(s)	194
BsrI	ACTGG	2 cut(s)	94, 286
BssAI	RCCGGY	1 cut(s)	194
BssECI	CCNNGG	2 cut(s)	102, 286
BssNI	GRCGYC	2 cut(s)	192, 198
Bst2UI	CCWGG	1 cut(s)	103
BstACI	GRCGYC	2 cut(s)	192, 198
BstBAI	YACGTR	1 cut(s)	224
BstC8I	GCNNGC	4 cut(s)	6, 85, 196, 217
BstF5I	GGATG	1 cut(s)	316
BstH2I	RGCGCY	2 cut(s)	195, 201
BstHHI	GCGC	2 cut(s)	194, 200
BstMWI	GCNNNNNNNGC	3 cut(s)	89, 206, 212
BstNI	CCWGG	1 cut(s)	103
BstSCI	CCNGG	2 cut(s)	101, 159
BstSLI	GKGCMC	1 cut(s)	94
BsuI	GTATCC	1 cut(s)	245
BsuRI	GGCC	4 cut(s)	77, 92, 135, 285
BtsCI	GGATG	1 cut(s)	316
Cac8I	GCNNGC	4 cut(s)	6, 85, 196, 217
CfoI	GCGC	2 cut(s)	194, 200
Cfr10I	RCCGGY	1 cut(s)	194
Cfr13I	GGNCC	6 cut(s)	45, 75, 90, 91, 134, 250
Csp6I	GTAC	2 cut(s)	53, 118
CviAII	CATG	1 cut(s)	151
CviJI	RGCY	6 cut(s)	77, 83, 92, 135, 164, 285
CviKI_1	RGCY	6 cut(s)	77, 83, 92, 135, 164, 285
CviQI	GTAC	2 cut(s)	53, 118
DinI	GGCGCC	2 cut(s)	193, 199
DraIII	CACNNNGTG	1 cut(s)	244
EciI	GGCGGA	1 cut(s)	23
Eco24I	GRGCYC	1 cut(s)	94
Eco47I	GGWCC	2 cut(s)	45, 250
EcoO109I	RGGNCCY	2 cut(s)	90, 250
EcoRII	CCWGG	1 cut(s)	101
EcoT38I	GRGCYC	1 cut(s)	94
EgeI	GGCGCC	2 cut(s)	193, 199
EheI	GGCGCC	2 cut(s)	193, 199
FaeI	CATG	1 cut(s)	154
FaiI	YATR	5 cut(s)	71, 73, 152, 221, 275
FatI	CATG	1 cut(s)	150
FauI	CCCGC	1 cut(s)	80
Fnu4HI	GCNGC	2 cut(s)	31, 207
FriOI	GRGCYC	1 cut(s)	94
Fsp4HI	GCNGC	2 cut(s)	31, 207
GlaI	GCGC	2 cut(s)	193, 199
GluI	GCNGC	2 cut(s)	31, 207
HaeII	RGCGCY	2 cut(s)	195, 201
HaeIII	GGCC	4 cut(s)	77, 92, 135, 285
HapII	CCGG	7 cut(s)	43, 78, 121, 132, 160, 195, 231
HhaI	GCGC	2 cut(s)	194, 200
Hin1I	GRCGYC	2 cut(s)	192, 198
Hin1II	CATG	1 cut(s)	154
Hin6I	GCGC	2 cut(s)	192, 198
HinP1I	GCGC	2 cut(s)	192, 198
HinfI	GANTC	1 cut(s)	59
HpaII	CCGG	7 cut(s)	43, 78, 121, 132, 160, 195, 231
HphI	GGTGA	1 cut(s)	91
Hpy166II	GTNNAC	1 cut(s)	99
Hpy8I	GTNNAC	1 cut(s)	99
Hpy99I	CGWCG	1 cut(s)	191
HpyCH4IV	ACGT	1 cut(s)	223
HpyCH4V	TGCA	3 cut(s)	4, 269, 295
HpyF10VI	GCNNNNNNNGC	3 cut(s)	89, 206, 212
HpySE526I	ACGT	1 cut(s)	223
Hsp92I	GRCGYC	2 cut(s)	192, 198
Hsp92II	CATG	1 cut(s)	154
HspAI	GCGC	2 cut(s)	192, 198
KasI	GGCGCC	2 cut(s)	191, 197
KroI	GCCGGC	1 cut(s)	194
KroNI	GCCGGC	1 cut(s)	196
LmnI	GCTCC	1 cut(s)	80
MaeII	ACGT	1 cut(s)	223
MhlI	GDGCHC	1 cut(s)	94
MluCI	AATT	1 cut(s)	255
Mly113I	GGCGCC	2 cut(s)	192, 198
MlyI	GAGTC	1 cut(s)	53
MnlI	CCTC	7 cut(s)	4, 7, 59, 238, 241, 294, 296
MreI	CGCCGGCG	1 cut(s)	194
MroNI	GCCGGC	1 cut(s)	194
MslI	CAYNNNNRTG	1 cut(s)	149
MspA1I	CMGCKG	1 cut(s)	87
MspI	CCGG	7 cut(s)	43, 78, 121, 132, 160, 195, 231
MspR9I	CCNGG	2 cut(s)	103, 161
MvaI	CCWGG	1 cut(s)	103
MwoI	GCNNNNNNNGC	3 cut(s)	89, 206, 212
NaeI	GCCGGC	1 cut(s)	196
NarI	GGCGCC	2 cut(s)	192, 198
NciI	CCSGG	1 cut(s)	161
NgoMIV	GCCGGC	1 cut(s)	194
NlaIII	CATG	1 cut(s)	154
NlaIV	GGNNCC	8 cut(s)	47, 82, 91, 92, 130, 136, 193, 199
PdiI	GCCGGC	1 cut(s)	196
PflMI	CCANNNNNTGG	1 cut(s)	244
PkrI	GCNGC	2 cut(s)	32, 208
PleI	GAGTC	1 cut(s)	53
PluTI	GGCGCC	2 cut(s)	195, 201
PpsI	GAGTC	1 cut(s)	53
Ppu21I	YACGTR	1 cut(s)	224
PpuMI	RGGWCCY	1 cut(s)	250
Psp5II	RGGWCCY	1 cut(s)	250
Psp6I	CCWGG	1 cut(s)	101
PspGI	CCWGG	1 cut(s)	101
PspN4I	GGNNCC	8 cut(s)	47, 82, 91, 92, 130, 136, 193, 199
PspOMI	GGGCCC	1 cut(s)	90
PspPI	GGNCC	6 cut(s)	45, 75, 90, 91, 134, 250
PspPPI	RGGWCCY	1 cut(s)	250
RsaI	GTAC	2 cut(s)	54, 119
RsaNI	GTAC	2 cut(s)	53, 118
RseI	CAYNNNNRTG	1 cut(s)	149
SatI	GCNGC	2 cut(s)	31, 207
Sau96I	GGNCC	6 cut(s)	45, 75, 90, 91, 134, 250
SchI	GAGTC	1 cut(s)	53
ScrFI	CCNGG	2 cut(s)	103, 161
SduI	GDGCHC	1 cut(s)	94
SetI	ASST	5 cut(s)	104, 130, 226, 246, 255
SfoI	GGCGCC	2 cut(s)	193, 199
SgrAI	CRCCGGYG	1 cut(s)	194
SinI	GGWCC	2 cut(s)	45, 250
SmiMI	CAYNNNNRTG	1 cut(s)	149
Sse9I	AATT	1 cut(s)	255
SsiI	CCGC	6 cut(s)	8, 30, 87, 107, 204, 207
SspDI	GGCGCC	2 cut(s)	191, 197
StyD4I	CCNGG	2 cut(s)	101, 159
TaiI	ACGT	1 cut(s)	226
TasI	AATT	1 cut(s)	255
TauI	GCSGC	2 cut(s)	33, 209
TspGWI	ACGGA	1 cut(s)	313
Van91I	CCANNNNNTGG	1 cut(s)	244
VpaK11BI	GGWCC	2 cut(s)	45, 250

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.