AT3G61060

Phloem protein 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0012773
Physical Location & Seq
Forward (+)
22602816 .. 22604582
1767 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G61060.1

Sequence Viewer

Length: 873 bp
ATGGGCGCGAATATCTCGGGAGGTTCACCGGAGTTTGACCGGAACGATGACGTTTACTCGAGGAAACTCAGATTGGTGGATTTACCTGAGAATTGTGTAGCGTTGATTATGACACGGCTTGATCCACCTGAGATTTGCCGGCTTGCTCGTCTCAACAGGATGTTCCGTCGCGCTTCCTCAGCTGATTTCATTTGGGAATCAAAGTTGCCTGCGAATTATCGTGTTATTGCACACAAGGTGTTCGATGAAATTACTCTGACGAAATTAATAAAGAAAGATCTTTATGCAAAGCTTAGCCAGCCTAATCTCTTCGACGATGGCACAAAGGAATTGTGGATAGATAAGAACACGGGTCGTCTTTGTTTATCTATTTCTTCAAAGGCACTAAGGATTACTGGAATTGATGATCGGAGATACTGGAGTCATATCCCAACTGATGAATCCAGGTTCCAGTCAGCTGCTTATGTTCAACAGATATGGTGGTTTGAAGTAGGAGGAGAGTTTGAGATCCAGTTTCCATCTGGAACATATAGTCTCTTCTTCCGTATCCAGCTCGGTAAAACATCAAAGAGGCTTGGAAGGAGGATCTGCAACTCTGAACACATTCATGGATGGGACATAAAACCTGTAAGGTTCCAGCTCGCCACTTCGGACAACCAACAAGCTGTATCATTGTGTTATCTGAACAACAACCCTGGGAGCTGGAGTCACTATCACGTTGGAGATTTCAAAGTGACAAATCCAGATGTATCAACAGGAATCAAATTCTCCATGACTCAAATCGATTGCACTCACACGAAAGGTGGGCTATGCATAGACTCTGTTCTTATATTACCTAAAGAATGTGCAAAAGAAGTCATTGGATCACAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0030246
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box PP2

Protein Analysis

290

Amino Acids

33.11

Weight (kDa)

8.72

Isoelectric Point (pI)

40.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2 PF14299 121 - 279 8.7e-39 Phloem protein 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012773)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G61060 AT3G61060
fragaria_vesca FvH4_7g13220
malus_domestica MD01G1050900.v1.1
prunus_persica Prupe.2G156400_v2.0.a1
pyrus_communis pycom01g07570
rosa_chinensis RchiOBHm_Chr1g0352361
rosa_laevigata RLG00000028336
rosa_multiflora Rmu_co8012550.1_g000001 Rmu_sc0002244.1_g000039 Rmu_ssc0000172.1_g000009
rosa_roxburghii Rroxscaffold_4G00302960
rosa_rugosa Rorug01G0227900 Rorug01G0228000
rosa_samantha Rh1BG212400 Rh1DG238800
rosa_wichuraiana Rw1G020910 Rw1G021070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 8, 171
AclWI GGATC 4 cut(s) 116, 502, 593, 871
AcsI RAATTY 1 cut(s) 764
AdeI CACNNNGTG 1 cut(s) 238
AgsI TTSAA 4 cut(s) 378, 470, 488, 730
AjnI CCWGG 2 cut(s) 443, 694
AjuI GAANNNNNNNTTGG 2 cut(s) 56, 88
AluBI AGCT 7 cut(s) 182, 292, 458, 553, 640, 665, 702
AluI AGCT 7 cut(s) 182, 292, 458, 553, 640, 665, 702
Alw26I GTCTC 2 cut(s) 155, 539
AlwI GGATC 4 cut(s) 116, 502, 593, 871
Ama87I CYCGRG 2 cut(s) 16, 58
ApeKI GCWGC 1 cut(s) 458
ApoI RAATTY 1 cut(s) 764
AseI ATTAAT 1 cut(s) 266
Asp700I GAANNNNTTC 1 cut(s) 603
AspLEI GCGC 2 cut(s) 8, 173
AsuHPI GGTGA 1 cut(s) 18
AvaI CYCGRG 2 cut(s) 16, 58
BaeI ACNNNNGTAYC 2 cut(s) 406, 439
BbvCI CCTCAGC 1 cut(s) 178
BbvI GCAGC 1 cut(s) 445
BccI CCATC 3 cut(s) 311, 526, 606
BceAI ACGGC 1 cut(s) 131
BciT130I CCWGG 2 cut(s) 445, 696
BciVI GTATCC 1 cut(s) 557
BcoDI GTCTC 2 cut(s) 155, 539
BfuI GTATCC 1 cut(s) 557
BglII AGATCT 1 cut(s) 277
BisI GCNGC 1 cut(s) 459
BlpI GCTNAGC 1 cut(s) 293
BlsI GCNGC 1 cut(s) 460
Bme1390I CCNGG 2 cut(s) 445, 696
BmeT110I CYCGRG 2 cut(s) 16, 58
BmiI GGNNCC 2 cut(s) 449, 635
BmrFI CCNGG 2 cut(s) 445, 696
BpmI CTGGAG 2 cut(s) 439, 724
Bpu10I CCTNAGC 1 cut(s) 178
Bpu1102I GCTNAGC 1 cut(s) 293
Bsa29I ATCGAT 1 cut(s) 783
BsaJI CCNNGG 2 cut(s) 694, 695
BsaWI WCCGGW 2 cut(s) 28, 39
BsaXI ACNNNNNCTCC 2 cut(s) 691, 721
Bse118I RCCGGY 1 cut(s) 138
Bse1I ACTGG 4 cut(s) 400, 422, 451, 511
BseBI CCWGG 2 cut(s) 445, 696
BseCI ATCGAT 1 cut(s) 783
BseDI CCNNGG 2 cut(s) 694, 695
BseGI GGATG 2 cut(s) 165, 617
BseMII CTCAG 4 cut(s) 78, 82, 120, 192
BseNI ACTGG 4 cut(s) 400, 422, 451, 511
BseRI GAGGAG 1 cut(s) 510
BseXI GCAGC 1 cut(s) 445
Bsh1236I CGCG 2 cut(s) 8, 171
BshVI ATCGAT 1 cut(s) 783
BsiHKCI CYCGRG 2 cut(s) 16, 58
BsiSI CCGG 3 cut(s) 29, 40, 139
BslFI GGGAC 1 cut(s) 629
BsmAI GTCTC 2 cut(s) 155, 539
BsmBI CGTCTC 1 cut(s) 155
BsmFI GGGAC 1 cut(s) 629
BsoBI CYCGRG 2 cut(s) 16, 58
Bsp143I GATC 6 cut(s) 121, 277, 406, 507, 585, 863
Bsp1720I GCTNAGC 1 cut(s) 293
BspCNI CTCAG 4 cut(s) 79, 81, 121, 191
BspDI ATCGAT 1 cut(s) 783
BspFNI CGCG 2 cut(s) 8, 171
BspLI GGNNCC 2 cut(s) 449, 635
BspPI GGATC 4 cut(s) 116, 502, 593, 871
BsrFI RCCGGY 1 cut(s) 138
BsrI ACTGG 4 cut(s) 400, 422, 451, 511
BssAI RCCGGY 1 cut(s) 138
BssECI CCNNGG 2 cut(s) 694, 695
BssMI GATC 6 cut(s) 121, 277, 406, 507, 585, 863
Bst2UI CCWGG 2 cut(s) 445, 696
Bst6I CTCTTC 2 cut(s) 314, 542
BstC8I GCNNGC 5 cut(s) 140, 144, 210, 299, 642
BstDEI CTNAG 6 cut(s) 68, 87, 129, 178, 293, 386
BstF5I GGATG 2 cut(s) 165, 617
BstFNI CGCG 2 cut(s) 8, 171
BstHHI GCGC 2 cut(s) 8, 173
BstKTI GATC 6 cut(s) 124, 280, 409, 510, 588, 866
BstMAI GTCTC 2 cut(s) 155, 539
BstMBI GATC 6 cut(s) 121, 277, 406, 507, 585, 863
BstMWI GCNNNNNNNGC 2 cut(s) 179, 298
BstNI CCWGG 2 cut(s) 445, 696
BstSCI CCNGG 2 cut(s) 443, 694
BstUI CGCG 2 cut(s) 8, 171
BstV1I GCAGC 1 cut(s) 445
BstX2I RGATCY 3 cut(s) 277, 507, 585
BstYI RGATCY 3 cut(s) 277, 507, 585
Bsu15I ATCGAT 1 cut(s) 783
BsuI GTATCC 1 cut(s) 557
BsuTUI ATCGAT 1 cut(s) 783
BtsCI GGATG 2 cut(s) 165, 617
Cac8I GCNNGC 5 cut(s) 140, 144, 210, 299, 642
CfoI GCGC 2 cut(s) 8, 173
Cfr10I RCCGGY 1 cut(s) 138
ClaI ATCGAT 1 cut(s) 783
CviAII CATG 2 cut(s) 608, 772
DdeI CTNAG 6 cut(s) 68, 87, 129, 178, 293, 386
DpnI GATC 6 cut(s) 123, 279, 408, 509, 587, 865
DpnII GATC 6 cut(s) 121, 277, 406, 507, 585, 863
DraIII CACNNNGTG 1 cut(s) 238
Eam1104I CTCTTC 2 cut(s) 314, 542
EarI CTCTTC 2 cut(s) 314, 542
Eco88I CYCGRG 2 cut(s) 16, 58
EcoRII CCWGG 2 cut(s) 443, 694
EcoT22I ATGCAT 1 cut(s) 815
Esp3I CGTCTC 1 cut(s) 155
FaeI CATG 2 cut(s) 611, 775
FaqI GGGAC 1 cut(s) 629
FatI CATG 2 cut(s) 607, 771
Fnu4HI GCNGC 1 cut(s) 459
FokI GGATG 2 cut(s) 172, 624
Fsp4HI GCNGC 1 cut(s) 459
GlaI GCGC 2 cut(s) 7, 172
GluI GCNGC 1 cut(s) 459
GsuI CTGGAG 2 cut(s) 439, 724
HapII CCGG 3 cut(s) 29, 40, 139
HhaI GCGC 2 cut(s) 8, 173
Hin1II CATG 2 cut(s) 611, 775
Hin6I GCGC 2 cut(s) 6, 171
HinP1I GCGC 2 cut(s) 6, 171
HindIII AAGCTT 1 cut(s) 290
HinfI GANTC 7 cut(s) 197, 421, 440, 706, 759, 775, 818
HpaII CCGG 3 cut(s) 29, 40, 139
HphI GGTGA 1 cut(s) 18
Hpy166II GTNNAC 2 cut(s) 26, 55
Hpy188I TCNGA 6 cut(s) 71, 258, 411, 598, 652, 684
Hpy188III TCNNGA 3 cut(s) 18, 522, 743
Hpy8I GTNNAC 2 cut(s) 26, 55
Hpy99I CGWCG 2 cut(s) 171, 317
HpyAV CCTTC 1 cut(s) 573
HpyCH4IV ACGT 2 cut(s) 51, 717
HpyCH4V TGCA 6 cut(s) 230, 287, 591, 789, 813, 848
HpyF10VI GCNNNNNNNGC 2 cut(s) 179, 298
HpyF3I CTNAG 6 cut(s) 68, 87, 129, 178, 293, 386
HpySE526I ACGT 2 cut(s) 51, 717
Hsp92II CATG 2 cut(s) 611, 775
HspAI GCGC 2 cut(s) 6, 171
KroI GCCGGC 1 cut(s) 138
KroNI GCCGGC 1 cut(s) 140
Kzo9I GATC 6 cut(s) 121, 277, 406, 507, 585, 863
LmnI GCTCC 1 cut(s) 699
Lsp1109I GCAGC 1 cut(s) 445
MaeII ACGT 2 cut(s) 51, 717
MaeIII GTNAC 2 cut(s) 707, 733
MalI GATC 6 cut(s) 123, 279, 408, 509, 587, 865
MboI GATC 6 cut(s) 121, 277, 406, 507, 585, 863
MboII GAAGA 4 cut(s) 301, 366, 529, 532
MflI RGATCY 3 cut(s) 277, 507, 585
MluCI AATT 7 cut(s) 91, 214, 249, 263, 329, 399, 764
MlyI GAGTC 4 cut(s) 430, 715, 769, 812
MmeI TCCRAC 1 cut(s) 700
MnlI CCTC 6 cut(s) 14, 54, 187, 488, 564, 576
Mph1103I ATGCAT 1 cut(s) 815
MroNI GCCGGC 1 cut(s) 138
MroXI GAANNNNTTC 1 cut(s) 603
MseI TTAA 1 cut(s) 266
MslI CAYNNNNRTG 1 cut(s) 606
MspA1I CMGCKG 2 cut(s) 182, 458
MspI CCGG 3 cut(s) 29, 40, 139
MspR9I CCNGG 2 cut(s) 445, 696
MvaI CCWGG 2 cut(s) 445, 696
MvnI CGCG 2 cut(s) 8, 171
MwoI GCNNNNNNNGC 2 cut(s) 179, 298
NaeI GCCGGC 1 cut(s) 140
NdeII GATC 6 cut(s) 121, 277, 406, 507, 585, 863
NgoMIV GCCGGC 1 cut(s) 138
NlaIII CATG 2 cut(s) 611, 775
NlaIV GGNNCC 2 cut(s) 449, 635
NmuCI GTSAC 2 cut(s) 707, 733
NsiI ATGCAT 1 cut(s) 815
PaeR7I CTCGAG 1 cut(s) 58
PasI CCCWGGG 1 cut(s) 695
PdiI GCCGGC 1 cut(s) 140
PdmI GAANNNNTTC 1 cut(s) 603
PfeI GAWTC 3 cut(s) 197, 440, 759
PkrI GCNGC 1 cut(s) 460
PleI GAGTC 4 cut(s) 429, 714, 769, 812
PpsI GAGTC 4 cut(s) 429, 714, 769, 812
PshBI ATTAAT 1 cut(s) 266
Psp6I CCWGG 2 cut(s) 443, 694
PspGI CCWGG 2 cut(s) 443, 694
PspN4I GGNNCC 2 cut(s) 449, 635
PspXI VCTCGAGB 1 cut(s) 58
PsuI RGATCY 3 cut(s) 277, 507, 585
PvuII CAGCTG 2 cut(s) 182, 458
RseI CAYNNNNRTG 1 cut(s) 606
SaqAI TTAA 1 cut(s) 266
SatI GCNGC 1 cut(s) 459
Sau3AI GATC 6 cut(s) 121, 277, 406, 507, 585, 863
SchI GAGTC 4 cut(s) 430, 715, 769, 812
ScrFI CCNGG 2 cut(s) 445, 696
Sfr274I CTCGAG 1 cut(s) 58
SlaI CTCGAG 1 cut(s) 58
SmiMI CAYNNNNRTG 1 cut(s) 606
SmlI CTYRAG 1 cut(s) 58
SmoI CTYRAG 1 cut(s) 58
Sse9I AATT 7 cut(s) 91, 214, 249, 263, 329, 399, 764
StyD4I CCNGG 2 cut(s) 443, 694
TaiI ACGT 2 cut(s) 54, 720
TaqI TCGA 4 cut(s) 59, 243, 312, 783
TasI AATT 7 cut(s) 91, 214, 249, 263, 329, 399, 764
TfiI GAWTC 3 cut(s) 197, 440, 759
Tru1I TTAA 1 cut(s) 266
Tru9I TTAA 1 cut(s) 266
TseFI GTSAC 2 cut(s) 707, 733
TseI GCWGC 1 cut(s) 458
Tsp45I GTSAC 2 cut(s) 707, 733
TspDTI ATGAA 4 cut(s) 178, 261, 453, 596
TspGWI ACGGA 2 cut(s) 155, 533
VspI ATTAAT 1 cut(s) 266
XapI RAATTY 1 cut(s) 764
XcmI CCANNNNNNNNNTGG 1 cut(s) 518
XhoI CTCGAG 1 cut(s) 58
XmnI GAANNNNTTC 1 cut(s) 603
Zsp2I ATGCAT 1 cut(s) 815
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.