Rw1G020910

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0012773
Physical Location & Seq
Reverse (-)
44662515 .. 44663718
1204 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G020910.1

Sequence Viewer

Length: 846 bp
ATGGGCGCTAATTTATCGGGGGGTGTTTCGGACGCGGAGGGTTATGCGCAGCCGAGGCTTGGGGATATACCAGAGAGCTGTGTGGCGTTGGTTTTGATGTACATGGACCCTCCTGAGATTTGCAAATTGGCCCGGTTGAACCGGGCTTTTCGCGGTGCTTCGTGGGCCGATTTCATCTGGGAATCGAAGTTGCCCACCAATTACCGGTTTATTGTGGACAAGGTGTTCGATGAAAAGTCTATGGTGAAGAATTCAGGGATGAGGGAAATCTATACCACGCTTTGCAAGTCTATTTCGTTTGATGATGGAACAAAGCAAATTTGGCTAGATAAGACCAAGGGTGGTATTCATCTGTCGATTTCTTCAAAGGCGTTATCGATTACAGGGATAGATGATCGAAGATATTGGAATTTCATAGCGATTGATGAATCAAGGTTTCAGAAAGTGGCTTATCTCCAACAAACCTGGTGGTTTGAAGTTAATGGAGAGTTTGACTTTCAATTTCCATTAGGGAAATATAGCCTCTTCTTTAGGCTCCACCTTGGCAGATCCTCCAAGAGACTTGGTCGCCGAGTATGCAATTTGGAGCATGTTCATGGCTGGAACATAAAACCAGTGAAGTTTGAGCTTACAACTTCTAATGGTCACCAGGCTGTATCAGAATATTACTTGGACAACCCTGGAAACTGGGTCAATTACCATGTGGGAGACTTTGTTGTTGACAATCCTCATGCTTTGATCAAGATCAATTTTTCGATGACCCAGATCGATTGTACTCACACCAAAGGCGGTGTCTGTGTAGACTCTGTGTTGATACGCCCTAGTAGTGTAGGAAAAGAGCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box PP2

Protein Analysis

281

Amino Acids

32.03

Weight (kDa)

8.15

Isoelectric Point (pI)

25.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2 PF14299 118 - 274 6.4e-38 Phloem protein 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012773)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G61060 AT3G61060
fragaria_vesca FvH4_7g13220
malus_domestica MD01G1050900.v1.1
prunus_persica Prupe.2G156400_v2.0.a1
pyrus_communis pycom01g07570
rosa_chinensis RchiOBHm_Chr1g0352361
rosa_laevigata RLG00000028336
rosa_multiflora Rmu_co8012550.1_g000001 Rmu_sc0002244.1_g000039 Rmu_ssc0000172.1_g000009
rosa_roxburghii Rroxscaffold_4G00302960
rosa_rugosa Rorug01G0227900 Rorug01G0228000
rosa_samantha Rh1BG212400 Rh1DG238800
rosa_wichuraiana Rw1G020910 Rw1G021070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 48
AccI GTMKAC 1 cut(s) 801
AccII CGCG 2 cut(s) 35, 153
AciI CCGC 3 cut(s) 35, 153, 789
AclWI GGATC 1 cut(s) 543
AcsI RAATTY 3 cut(s) 250, 318, 409
AfaI GTAC 2 cut(s) 101, 775
AfiI CCNNNNNNNGG 2 cut(s) 59, 204
AgeI ACCGGT 1 cut(s) 204
AgsI TTSAA 4 cut(s) 139, 366, 476, 500
AjnI CCWGG 3 cut(s) 464, 648, 679
AloI GAACNNNNNNTCC 2 cut(s) 209, 241
AluBI AGCT 2 cut(s) 78, 628
AluI AGCT 2 cut(s) 78, 628
Alw26I GTCTC 2 cut(s) 553, 702
AlwI GGATC 1 cut(s) 543
AoxI GGCC 2 cut(s) 129, 165
ApeKI GCWGC 1 cut(s) 49
ApoI RAATTY 3 cut(s) 250, 318, 409
ArsI GACNNNNNNTTYG 4 cut(s) 209, 241, 777, 809
AsiGI ACCGGT 1 cut(s) 204
AspLEI GCGC 2 cut(s) 8, 49
AspS9I GGNCC 3 cut(s) 106, 130, 165
AsuC2I CCSGG 2 cut(s) 133, 143
AsuHPI GGTGA 2 cut(s) 256, 638
AvaII GGWCC 1 cut(s) 106
BbvI GCAGC 1 cut(s) 61
BccI CCATC 1 cut(s) 299
BciT130I CCWGG 3 cut(s) 466, 650, 681
BclI TGATCA 1 cut(s) 738
BcnI CCSGG 2 cut(s) 133, 143
BcoDI GTCTC 2 cut(s) 553, 702
BfaI CTAG 2 cut(s) 326, 822
BfoI RGCGCY 1 cut(s) 9
BisI GCNGC 1 cut(s) 50
BlsI GCNGC 1 cut(s) 51
Bme1390I CCNGG 5 cut(s) 133, 143, 466, 650, 681
Bme18I GGWCC 1 cut(s) 106
BmgT120I GGNCC 3 cut(s) 106, 130, 165
BmiI GGNNCC 2 cut(s) 108, 536
BmrFI CCNGG 5 cut(s) 133, 143, 466, 650, 681
BmrI ACTGGG 1 cut(s) 697
BmuI ACTGGG 1 cut(s) 697
BpuMI CCSGG 2 cut(s) 133, 143
Bsa29I ATCGAT 2 cut(s) 377, 768
BsaBI GATNNNNATC 1 cut(s) 743
BsaJI CCNNGG 4 cut(s) 53, 336, 541, 679
BsaWI WCCGGW 1 cut(s) 204
BsaXI ACNNNNNCTCC 2 cut(s) 699, 729
Bsc4I CCNNNNNNNGG 2 cut(s) 59, 204
Bse118I RCCGGY 1 cut(s) 204
Bse1I ACTGG 2 cut(s) 614, 692
Bse8I GATNNNNATC 1 cut(s) 743
BseBI CCWGG 3 cut(s) 466, 650, 681
BseCI ATCGAT 2 cut(s) 377, 768
BseDI CCNNGG 4 cut(s) 53, 336, 541, 679
BseGI GGATG 1 cut(s) 264
BseJI GATNNNNATC 1 cut(s) 743
BseLI CCNNNNNNNGG 2 cut(s) 59, 204
BseMII CTCAG 1 cut(s) 105
BseNI ACTGG 2 cut(s) 614, 692
BseXI GCAGC 1 cut(s) 61
Bsh1236I CGCG 2 cut(s) 35, 153
BshFI GGCC 2 cut(s) 131, 167
BshTI ACCGGT 1 cut(s) 204
BshVI ATCGAT 2 cut(s) 377, 768
BsiSI CCGG 3 cut(s) 133, 142, 205
BslI CCNNNNNNNGG 2 cut(s) 59, 204
BsmAI GTCTC 2 cut(s) 553, 702
BsnI GGCC 2 cut(s) 131, 167
Bsp1407I TGTACA 1 cut(s) 99
Bsp143I GATC 5 cut(s) 394, 548, 738, 744, 765
BspACI CCGC 3 cut(s) 35, 153, 789
BspANI GGCC 2 cut(s) 131, 167
BspCNI CTCAG 1 cut(s) 106
BspDI ATCGAT 2 cut(s) 377, 768
BspFNI CGCG 2 cut(s) 35, 153
BspLI GGNNCC 2 cut(s) 108, 536
BspPI GGATC 1 cut(s) 543
BsrFI RCCGGY 1 cut(s) 204
BsrGI TGTACA 1 cut(s) 99
BsrI ACTGG 2 cut(s) 614, 692
BssAI RCCGGY 1 cut(s) 204
BssECI CCNNGG 4 cut(s) 53, 336, 541, 679
BssMI GATC 5 cut(s) 394, 548, 738, 744, 765
BssT1I CCWWGG 2 cut(s) 336, 541
Bst2UI CCWGG 3 cut(s) 466, 650, 681
Bst6I CTCTTC 1 cut(s) 530
BstAUI TGTACA 1 cut(s) 99
BstDEI CTNAG 1 cut(s) 114
BstEII GGTNACC 1 cut(s) 644
BstF5I GGATG 1 cut(s) 264
BstFNI CGCG 2 cut(s) 35, 153
BstH2I RGCGCY 1 cut(s) 9
BstHHI GCGC 2 cut(s) 8, 49
BstKTI GATC 5 cut(s) 397, 551, 741, 747, 768
BstMAI GTCTC 2 cut(s) 553, 702
BstMBI GATC 5 cut(s) 394, 548, 738, 744, 765
BstMWI GCNNNNNNNGC 4 cut(s) 55, 164, 322, 576
BstNI CCWGG 3 cut(s) 466, 650, 681
BstNSI RCATGY 1 cut(s) 593
BstPI GGTNACC 1 cut(s) 644
BstSCI CCNGG 5 cut(s) 131, 141, 464, 648, 679
BstUI CGCG 2 cut(s) 35, 153
BstV1I GCAGC 1 cut(s) 61
BstX2I RGATCY 1 cut(s) 548
BstYI RGATCY 1 cut(s) 548
Bsu15I ATCGAT 2 cut(s) 377, 768
BsuRI GGCC 2 cut(s) 131, 167
BsuTUI ATCGAT 2 cut(s) 377, 768
BtsCI GGATG 1 cut(s) 264
BtsIMutI CAGTG 1 cut(s) 621
CfoI GCGC 2 cut(s) 8, 49
Cfr10I RCCGGY 1 cut(s) 204
Cfr13I GGNCC 3 cut(s) 106, 130, 165
ClaI ATCGAT 2 cut(s) 377, 768
CseI GACGC 1 cut(s) 41
CsiI ACCWGGT 1 cut(s) 464
Csp6I GTAC 2 cut(s) 100, 774
CspAI ACCGGT 1 cut(s) 204
CspCI CAANNNNNGTGG 2 cut(s) 449, 484
CviAII CATG 5 cut(s) 103, 590, 596, 701, 731
CviQI GTAC 2 cut(s) 100, 774
DdeI CTNAG 1 cut(s) 114
DpnI GATC 5 cut(s) 396, 550, 740, 746, 767
DpnII GATC 5 cut(s) 394, 548, 738, 744, 765
Eam1104I CTCTTC 1 cut(s) 530
EarI CTCTTC 1 cut(s) 530
Eco130I CCWWGG 2 cut(s) 336, 541
Eco47I GGWCC 1 cut(s) 106
Eco91I GGTNACC 1 cut(s) 644
EcoO65I GGTNACC 1 cut(s) 644
EcoRI GAATTC 1 cut(s) 250
EcoRII CCWGG 3 cut(s) 464, 648, 679
EcoT14I CCWWGG 2 cut(s) 336, 541
ErhI CCWWGG 2 cut(s) 336, 541
FaeI CATG 5 cut(s) 106, 593, 599, 704, 734
FatI CATG 5 cut(s) 102, 589, 595, 700, 730
FbaI TGATCA 1 cut(s) 738
FblI GTMKAC 1 cut(s) 801
Fnu4HI GCNGC 1 cut(s) 50
FokI GGATG 1 cut(s) 271
Fsp4HI GCNGC 1 cut(s) 50
FspBI CTAG 2 cut(s) 326, 822
FspI TGCGCA 1 cut(s) 48
GlaI GCGC 2 cut(s) 7, 48
GluI GCNGC 1 cut(s) 50
HaeII RGCGCY 1 cut(s) 9
HaeIII GGCC 2 cut(s) 131, 167
HapII CCGG 3 cut(s) 133, 142, 205
HgaI GACGC 1 cut(s) 41
HhaI GCGC 2 cut(s) 8, 49
Hin1II CATG 5 cut(s) 106, 593, 599, 704, 734
Hin6I GCGC 2 cut(s) 6, 47
HinP1I GCGC 2 cut(s) 6, 47
HincII GTYRAC 1 cut(s) 721
HindII GTYRAC 1 cut(s) 721
HinfI GANTC 3 cut(s) 182, 428, 803
HpaII CCGG 3 cut(s) 133, 142, 205
HphI GGTGA 2 cut(s) 256, 638
Hpy166II GTNNAC 3 cut(s) 217, 721, 802
Hpy188I TCNGA 3 cut(s) 31, 441, 661
Hpy188III TCNNGA 2 cut(s) 113, 742
Hpy8I GTNNAC 3 cut(s) 217, 721, 802
HpyCH4V TGCA 3 cut(s) 123, 285, 579
HpyF10VI GCNNNNNNNGC 4 cut(s) 55, 164, 322, 576
HpyF3I CTNAG 1 cut(s) 114
Hsp92II CATG 5 cut(s) 106, 593, 599, 704, 734
HspAI GCGC 2 cut(s) 6, 47
Ksp22I TGATCA 1 cut(s) 738
Kzo9I GATC 5 cut(s) 394, 548, 738, 744, 765
LmnI GCTCC 2 cut(s) 540, 586
Lsp1109I GCAGC 1 cut(s) 61
MabI ACCWGGT 1 cut(s) 464
MaeI CTAG 2 cut(s) 326, 822
MaeIII GTNAC 1 cut(s) 644
MalI GATC 5 cut(s) 396, 550, 740, 746, 767
MboI GATC 5 cut(s) 394, 548, 738, 744, 765
MboII GAAGA 4 cut(s) 259, 354, 411, 517
MflI RGATCY 1 cut(s) 548
MlyI GAGTC 1 cut(s) 797
MmeI TCCRAC 1 cut(s) 481
MnlI CCTC 7 cut(s) 31, 48, 120, 255, 533, 562, 738
MseI TTAA 1 cut(s) 480
MslI CAYNNNNRTG 1 cut(s) 594
MspI CCGG 3 cut(s) 133, 142, 205
MspR9I CCNGG 5 cut(s) 133, 143, 466, 650, 681
MvaI CCWGG 3 cut(s) 466, 650, 681
MvnI CGCG 2 cut(s) 35, 153
MwoI GCNNNNNNNGC 4 cut(s) 55, 164, 322, 576
NciI CCSGG 2 cut(s) 133, 143
NdeII GATC 5 cut(s) 394, 548, 738, 744, 765
NlaIII CATG 5 cut(s) 106, 593, 599, 704, 734
NlaIV GGNNCC 2 cut(s) 108, 536
NmeAIII GCCGAG 2 cut(s) 78, 596
NmuCI GTSAC 1 cut(s) 644
NsbI TGCGCA 1 cut(s) 48
NspI RCATGY 1 cut(s) 593
PfeI GAWTC 2 cut(s) 182, 428
PflFI GACNNNGTC 1 cut(s) 564
PinAI ACCGGT 1 cut(s) 204
PkrI GCNGC 1 cut(s) 51
PleI GAGTC 1 cut(s) 797
PpsI GAGTC 1 cut(s) 797
Psp6I CCWGG 3 cut(s) 464, 648, 679
PspEI GGTNACC 1 cut(s) 644
PspGI CCWGG 3 cut(s) 464, 648, 679
PspN4I GGNNCC 2 cut(s) 108, 536
PspPI GGNCC 3 cut(s) 106, 130, 165
PsuI RGATCY 1 cut(s) 548
PsyI GACNNNGTC 1 cut(s) 564
RsaI GTAC 2 cut(s) 101, 775
RsaNI GTAC 2 cut(s) 100, 774
RseI CAYNNNNRTG 1 cut(s) 594
SaqAI TTAA 1 cut(s) 480
SatI GCNGC 1 cut(s) 50
Sau3AI GATC 5 cut(s) 394, 548, 738, 744, 765
Sau96I GGNCC 3 cut(s) 106, 130, 165
SchI GAGTC 1 cut(s) 797
ScrFI CCNGG 5 cut(s) 133, 143, 466, 650, 681
SetI ASST 6 cut(s) 80, 225, 437, 467, 543, 630
SexAI ACCWGGT 1 cut(s) 464
SinI GGWCC 1 cut(s) 106
SmiMI CAYNNNNRTG 1 cut(s) 594
SsiI CCGC 3 cut(s) 35, 153, 789
SspI AATATT 1 cut(s) 665
SspMI CTAG 2 cut(s) 326, 822
StyD4I CCNGG 5 cut(s) 131, 141, 464, 648, 679
StyI CCWWGG 2 cut(s) 336, 541
TaqI TCGA 7 cut(s) 185, 228, 356, 377, 397, 755, 768
TatI WGTACW 2 cut(s) 99, 773
TfiI GAWTC 2 cut(s) 182, 428
Tru1I TTAA 1 cut(s) 480
Tru9I TTAA 1 cut(s) 480
TscAI CASTG 1 cut(s) 621
TseFI GTSAC 1 cut(s) 644
TseI GCWGC 1 cut(s) 49
Tsp45I GTSAC 1 cut(s) 644
TspDTI ATGAA 6 cut(s) 163, 246, 338, 403, 441, 584
TspRI CASTG 1 cut(s) 621
Tth111I GACNNNGTC 1 cut(s) 564
VpaK11BI GGWCC 1 cut(s) 106
XapI RAATTY 3 cut(s) 250, 318, 409
XceI RCATGY 1 cut(s) 593
XmiI GTMKAC 1 cut(s) 801
XspI CTAG 2 cut(s) 326, 822
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.