FvH4_7g13220

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0012773
Physical Location & Seq
Reverse (-)
11894544 .. 11896785
2242 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g13220.t1

Sequence Viewer

Length: 846 bp
ATGGGTGCTAATTTATCGGGTGGTGTTACGGACGTGGAGGGTATGGTGCAGCCGAGGCTTGGGGATATACCAGAGAGCTGTGTGGCGTTGGTTTTGATGTACATGGATCCGCCGGAGATTTGCATGCTGGCCCGATTGAACCGGGCTTTTCGGGGAGCTTCGTGGGCCGATTTCGTCTGGGAAGCGAAGTTACCGGCGAATTATCGGTTCATTGTGGACAAGGTGTTTCATGAGAAGAGTATGGTGAAGAATTCAGGGAAGAGGGATATCTATACCAAGCTTTGCAGGTCTATTTCATTTGATGATGGAACAAAGGAATTTTGGCTAGATAAGAACAATGGTGGTATTCATTTGTCGATTGCTTCAAAGGCGTTGTCGATTACAGGGATAGATGATCGAAGATATTGGAATTTCATAGCAAGTGATGAATCTAGGTTTCAGACAGTGGCTTATCTCCAACAAACATGGTGGCTTGAAGTTAATGGAGATTTTGACTTTCAATTTCCATTAGGGAAATATAGCCTGTTCTTTAGGCTCCACCTTGGCAGATCCAACAAGAGACTTGGTCGCCGAGTATGCAATTCGGAGCATGTTCATGGCTGGAACATAAAACCAGTGAAGTTTGAGCTTACGACTTCTAATGGTCAACGGGCTGTATCAGAACATTACTTGGACAACCCTGGAAATTGGGTCAATTACCATGTGGGAGATTTTGTTGTTGACAATCCTCATGCTTTGATCAAGATCAAATATTCGATGACCCAGATCGATTGTACACACACCAAAGGCGGTGTTTGTGTAGACTCTGTGTTGATACACCCTAGTGGTGTAGGAAAAGAGCGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box PP2

Protein Analysis

282

Amino Acids

31.98

Weight (kDa)

8.46

Isoelectric Point (pI)

28.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2 PF14299 118 - 274 4.2e-36 Phloem protein 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012773)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G61060 AT3G61060
fragaria_vesca FvH4_7g13220
malus_domestica MD01G1050900.v1.1
prunus_persica Prupe.2G156400_v2.0.a1
pyrus_communis pycom01g07570
rosa_chinensis RchiOBHm_Chr1g0352361
rosa_laevigata RLG00000028336
rosa_multiflora Rmu_co8012550.1_g000001 Rmu_sc0002244.1_g000039 Rmu_ssc0000172.1_g000009
rosa_roxburghii Rroxscaffold_4G00302960
rosa_rugosa Rorug01G0227900 Rorug01G0228000
rosa_samantha Rh1BG212400 Rh1DG238800
rosa_wichuraiana Rw1G020910 Rw1G021070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 276
AccI GTMKAC 1 cut(s) 801
AciI CCGC 2 cut(s) 110, 789
AclWI GGATC 3 cut(s) 101, 114, 543
AcsI RAATTY 3 cut(s) 250, 317, 409
AfaI GTAC 2 cut(s) 101, 775
AfiI CCNNNNNNNGG 1 cut(s) 59
AgsI TTSAA 4 cut(s) 139, 366, 476, 500
AjiI CACGTC 1 cut(s) 34
AjnI CCWGG 1 cut(s) 679
AleI CACNNNNGTG 1 cut(s) 822
AluBI AGCT 4 cut(s) 78, 158, 280, 628
AluI AGCT 4 cut(s) 78, 158, 280, 628
Alw26I GTCTC 1 cut(s) 553
AlwI GGATC 3 cut(s) 101, 114, 543
AoxI GGCC 2 cut(s) 129, 165
ApeKI GCWGC 1 cut(s) 49
ApoI RAATTY 3 cut(s) 250, 317, 409
ArsI GACNNNNNNTTYG 2 cut(s) 359, 391
AspS9I GGNCC 2 cut(s) 130, 165
AsuC2I CCSGG 1 cut(s) 143
AsuHPI GGTGA 1 cut(s) 256
BamHI GGATCC 1 cut(s) 106
BarI GAAGNNNNNNTAC 2 cut(s) 174, 206
BbvI GCAGC 1 cut(s) 61
BccI CCATC 1 cut(s) 299
BciT130I CCWGG 1 cut(s) 681
BclI TGATCA 1 cut(s) 738
BcnI CCSGG 1 cut(s) 143
BcoDI GTCTC 1 cut(s) 553
BfaI CTAG 3 cut(s) 326, 432, 822
BfuAI ACCTGC 1 cut(s) 276
BisI GCNGC 1 cut(s) 50
BlsI GCNGC 1 cut(s) 51
Bme1390I CCNGG 2 cut(s) 143, 681
BmgBI CACGTC 1 cut(s) 34
BmgT120I GGNCC 2 cut(s) 130, 165
BmiI GGNNCC 2 cut(s) 108, 536
BmrFI CCNGG 2 cut(s) 143, 681
BpuMI CCSGG 1 cut(s) 143
Bsa29I ATCGAT 1 cut(s) 768
BsaBI GATNNNNATC 1 cut(s) 743
BsaJI CCNNGG 3 cut(s) 53, 541, 679
BsaXI ACNNNNNCTCC 2 cut(s) 699, 729
Bsc4I CCNNNNNNNGG 1 cut(s) 59
Bse118I RCCGGY 1 cut(s) 193
Bse1I ACTGG 1 cut(s) 614
Bse8I GATNNNNATC 1 cut(s) 743
BseBI CCWGG 1 cut(s) 681
BseCI ATCGAT 1 cut(s) 768
BseDI CCNNGG 3 cut(s) 53, 541, 679
BseJI GATNNNNATC 1 cut(s) 743
BseLI CCNNNNNNNGG 1 cut(s) 59
BseNI ACTGG 1 cut(s) 614
BseXI GCAGC 1 cut(s) 61
BsgI GTGCAG 1 cut(s) 68
BshFI GGCC 2 cut(s) 131, 167
BshVI ATCGAT 1 cut(s) 768
BsiSI CCGG 3 cut(s) 113, 142, 194
BslI CCNNNNNNNGG 1 cut(s) 59
BsmAI GTCTC 1 cut(s) 553
BsnI GGCC 2 cut(s) 131, 167
Bsp1407I TGTACA 2 cut(s) 99, 773
Bsp143I GATC 6 cut(s) 106, 394, 548, 738, 744, 765
BspACI CCGC 2 cut(s) 110, 789
BspANI GGCC 2 cut(s) 131, 167
BspDI ATCGAT 1 cut(s) 768
BspHI TCATGA 1 cut(s) 229
BspLI GGNNCC 2 cut(s) 108, 536
BspMI ACCTGC 1 cut(s) 276
BspPI GGATC 3 cut(s) 101, 114, 543
BsrFI RCCGGY 1 cut(s) 193
BsrGI TGTACA 2 cut(s) 99, 773
BsrI ACTGG 1 cut(s) 614
BssAI RCCGGY 1 cut(s) 193
BssECI CCNNGG 3 cut(s) 53, 541, 679
BssMI GATC 6 cut(s) 106, 394, 548, 738, 744, 765
BssT1I CCWWGG 1 cut(s) 541
Bst2UI CCWGG 1 cut(s) 681
Bst4CI ACNGT 1 cut(s) 445
Bst6I CTCTTC 2 cut(s) 230, 254
BstAUI TGTACA 2 cut(s) 99, 773
BstC8I GCNNGC 2 cut(s) 125, 129
BstKTI GATC 6 cut(s) 109, 397, 551, 741, 747, 768
BstMAI GTCTC 1 cut(s) 553
BstMBI GATC 6 cut(s) 106, 394, 548, 738, 744, 765
BstMWI GCNNNNNNNGC 4 cut(s) 55, 164, 368, 576
BstNI CCWGG 1 cut(s) 681
BstNSI RCATGY 2 cut(s) 127, 593
BstSCI CCNGG 2 cut(s) 141, 679
BstV1I GCAGC 1 cut(s) 61
BstX2I RGATCY 2 cut(s) 106, 548
BstYI RGATCY 2 cut(s) 106, 548
Bsu15I ATCGAT 1 cut(s) 768
BsuRI GGCC 2 cut(s) 131, 167
BsuTUI ATCGAT 1 cut(s) 768
BtrI CACGTC 1 cut(s) 34
BtsIMutI CAGTG 2 cut(s) 450, 621
BveI ACCTGC 1 cut(s) 276
Cac8I GCNNGC 2 cut(s) 125, 129
CciI TCATGA 1 cut(s) 229
Cfr10I RCCGGY 1 cut(s) 193
Cfr13I GGNCC 2 cut(s) 130, 165
ClaI ATCGAT 1 cut(s) 768
Csp6I GTAC 2 cut(s) 100, 774
CspCI CAANNNNNGTGG 2 cut(s) 449, 484
CviAII CATG 8 cut(s) 103, 124, 230, 465, 590, 596, 701, 731
CviQI GTAC 2 cut(s) 100, 774
DpnI GATC 6 cut(s) 108, 396, 550, 740, 746, 767
DpnII GATC 6 cut(s) 106, 394, 548, 738, 744, 765
Eam1104I CTCTTC 2 cut(s) 230, 254
EarI CTCTTC 2 cut(s) 230, 254
EciI GGCGGA 1 cut(s) 99
Eco130I CCWWGG 1 cut(s) 541
Eco32I GATATC 1 cut(s) 268
EcoRI GAATTC 1 cut(s) 250
EcoRII CCWGG 1 cut(s) 679
EcoRV GATATC 1 cut(s) 268
EcoT14I CCWWGG 1 cut(s) 541
ErhI CCWWGG 1 cut(s) 541
FaeI CATG 8 cut(s) 106, 127, 233, 468, 593, 599, 704, 734
FatI CATG 8 cut(s) 102, 123, 229, 464, 589, 595, 700, 730
FbaI TGATCA 1 cut(s) 738
FblI GTMKAC 1 cut(s) 801
Fnu4HI GCNGC 1 cut(s) 50
Fsp4HI GCNGC 1 cut(s) 50
FspBI CTAG 3 cut(s) 326, 432, 822
GluI GCNGC 1 cut(s) 50
HaeIII GGCC 2 cut(s) 131, 167
HapII CCGG 3 cut(s) 113, 142, 194
Hin1II CATG 8 cut(s) 106, 127, 233, 468, 593, 599, 704, 734
HincII GTYRAC 2 cut(s) 647, 721
HindII GTYRAC 2 cut(s) 647, 721
HindIII AAGCTT 1 cut(s) 278
HinfI GANTC 2 cut(s) 428, 803
HpaII CCGG 3 cut(s) 113, 142, 194
HphI GGTGA 1 cut(s) 256
Hpy166II GTNNAC 5 cut(s) 217, 647, 721, 776, 802
Hpy188I TCNGA 3 cut(s) 441, 586, 661
Hpy188III TCNNGA 2 cut(s) 230, 742
Hpy8I GTNNAC 5 cut(s) 217, 647, 721, 776, 802
HpyCH4III ACNGT 1 cut(s) 445
HpyCH4IV ACGT 1 cut(s) 33
HpyCH4V TGCA 4 cut(s) 49, 123, 285, 579
HpyF10VI GCNNNNNNNGC 4 cut(s) 55, 164, 368, 576
HpySE526I ACGT 1 cut(s) 33
Hsp92II CATG 8 cut(s) 106, 127, 233, 468, 593, 599, 704, 734
Ksp22I TGATCA 1 cut(s) 738
Kzo9I GATC 6 cut(s) 106, 394, 548, 738, 744, 765
LmnI GCTCC 3 cut(s) 155, 540, 586
Lsp1109I GCAGC 1 cut(s) 61
MaeI CTAG 3 cut(s) 326, 432, 822
MaeII ACGT 1 cut(s) 33
MaeIII GTNAC 2 cut(s) 25, 189
MalI GATC 6 cut(s) 108, 396, 550, 740, 746, 767
MboI GATC 6 cut(s) 106, 394, 548, 738, 744, 765
MboII GAAGA 4 cut(s) 247, 259, 271, 411
MflI RGATCY 2 cut(s) 106, 548
MluCI AATT 9 cut(s) 10, 199, 250, 317, 409, 500, 580, 685, 694
MlyI GAGTC 1 cut(s) 797
MmeI TCCRAC 2 cut(s) 481, 576
MnlI CCTC 4 cut(s) 31, 48, 255, 738
MseI TTAA 1 cut(s) 480
MslI CAYNNNNRTG 2 cut(s) 594, 822
MspI CCGG 3 cut(s) 113, 142, 194
MspR9I CCNGG 2 cut(s) 143, 681
MvaI CCWGG 1 cut(s) 681
MwoI GCNNNNNNNGC 4 cut(s) 55, 164, 368, 576
NciI CCSGG 1 cut(s) 143
NdeII GATC 6 cut(s) 106, 394, 548, 738, 744, 765
NlaIII CATG 8 cut(s) 106, 127, 233, 468, 593, 599, 704, 734
NlaIV GGNNCC 2 cut(s) 108, 536
NmeAIII GCCGAG 2 cut(s) 78, 596
NspI RCATGY 2 cut(s) 127, 593
OliI CACNNNNGTG 1 cut(s) 822
PaeI GCATGC 1 cut(s) 127
PagI TCATGA 1 cut(s) 229
PfeI GAWTC 1 cut(s) 428
PflFI GACNNNGTC 1 cut(s) 564
PkrI GCNGC 1 cut(s) 51
PleI GAGTC 1 cut(s) 797
PpsI GAGTC 1 cut(s) 797
Psp6I CCWGG 1 cut(s) 679
PspGI CCWGG 1 cut(s) 679
PspN4I GGNNCC 2 cut(s) 108, 536
PspPI GGNCC 2 cut(s) 130, 165
PsuI RGATCY 2 cut(s) 106, 548
PsyI GACNNNGTC 1 cut(s) 564
RsaI GTAC 2 cut(s) 101, 775
RsaNI GTAC 2 cut(s) 100, 774
RseI CAYNNNNRTG 2 cut(s) 594, 822
SaqAI TTAA 1 cut(s) 480
SatI GCNGC 1 cut(s) 50
Sau3AI GATC 6 cut(s) 106, 394, 548, 738, 744, 765
Sau96I GGNCC 2 cut(s) 130, 165
SchI GAGTC 1 cut(s) 797
ScrFI CCNGG 2 cut(s) 143, 681
SetI ASST 9 cut(s) 36, 80, 160, 225, 282, 290, 437, 543, 630
SmiMI CAYNNNNRTG 2 cut(s) 594, 822
SphI GCATGC 1 cut(s) 127
Sse9I AATT 9 cut(s) 10, 199, 250, 317, 409, 500, 580, 685, 694
SsiI CCGC 2 cut(s) 110, 789
SspI AATATT 1 cut(s) 752
SspMI CTAG 3 cut(s) 326, 432, 822
StyD4I CCNGG 2 cut(s) 141, 679
StyI CCWWGG 1 cut(s) 541
TaaI ACNGT 1 cut(s) 445
TaiI ACGT 1 cut(s) 36
TaqI TCGA 5 cut(s) 356, 377, 397, 755, 768
TasI AATT 9 cut(s) 10, 199, 250, 317, 409, 500, 580, 685, 694
TatI WGTACW 2 cut(s) 99, 773
TfiI GAWTC 1 cut(s) 428
Tru1I TTAA 1 cut(s) 480
Tru9I TTAA 1 cut(s) 480
TscAI CASTG 2 cut(s) 450, 621
TseI GCWGC 1 cut(s) 49
TspDTI ATGAA 7 cut(s) 199, 218, 285, 338, 403, 441, 584
TspGWI ACGGA 1 cut(s) 44
TspRI CASTG 2 cut(s) 450, 621
Tth111I GACNNNGTC 1 cut(s) 564
XapI RAATTY 3 cut(s) 250, 317, 409
XceI RCATGY 2 cut(s) 127, 593
XmiI GTMKAC 1 cut(s) 801
XspI CTAG 3 cut(s) 326, 432, 822
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.