Rmu_sc0002244.1_g000039

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002244.1
OG0012773
Physical Location & Seq
Forward (+)
157559 .. 158763
1205 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002244.1_g000039.1.cds

Sequence Viewer

Length: 846 bp
atgggcgctaatttatcggggggtgtttcggacgcggagggttatgcgcagccgaggcttggggatataccagagagctgtgtggcgttggttttgatgtacatggaccctcctgagatttgcaaattggcccggttgaaccgggcttttcgcggtgcttcgtgggccgatttcatctgggaatcgaagttgcccacgaattacaggtttattgtggacaaggtgttcgatgaaaagtctatggtgaagaattcagggatgagggatatctataccacgctttgcaagtctatttcgtttgatgatggaacaaagcaaatttggctagataagaccaagggtggtattcatctgtcgatttcttcaaaggcgttatcgattacagggatagatgatcgaagatattggaatttcatagcgattgatgaatcaaggtttcagaaagtggcttatctccaacaaacctggtggtttgaagttaatggagagtttgactttcaatttccattagggaaatatagcctcttctttaggctccaccttggcagatcctccaagagacttggtcgccgagtatgcaatttggagcatgttcatggctggaacataaaaccagtgaagtttgagcttacaacttctaatggtcaccaggctgtatcagaatattacttggacaaccctggaaactgggtcaattaccatgtgggagactttgttgttgacaatcctcatgctttgatcaagatcaatttttcgatgacccagatcgattgtactcacaccaaaggcggtgtctgtgtagactctgtgttgatacgccctagtagtgtaggaaaagagcattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box PP2

Protein Analysis

281

Amino Acids

32.02

Weight (kDa)

8.15

Isoelectric Point (pI)

24.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012773)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G61060 AT3G61060
fragaria_vesca FvH4_7g13220
malus_domestica MD01G1050900.v1.1
prunus_persica Prupe.2G156400_v2.0.a1
pyrus_communis pycom01g07570
rosa_chinensis RchiOBHm_Chr1g0352361
rosa_laevigata RLG00000028336
rosa_multiflora Rmu_co8012550.1_g000001 Rmu_sc0002244.1_g000039 Rmu_ssc0000172.1_g000009
rosa_roxburghii Rroxscaffold_4G00302960
rosa_rugosa Rorug01G0227900 Rorug01G0228000
rosa_samantha Rh1BG212400 Rh1DG238800
rosa_wichuraiana Rw1G020910 Rw1G021070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 48
AccI GTMKAC 1 cut(s) 801
AccII CGCG 2 cut(s) 35, 153
AciI CCGC 3 cut(s) 35, 153, 789
AclWI GGATC 1 cut(s) 543
AcsI RAATTY 3 cut(s) 250, 318, 409
AfaI GTAC 2 cut(s) 101, 775
AfiI CCNNNNNNNGG 1 cut(s) 59
AgsI TTSAA 4 cut(s) 139, 366, 476, 500
AjnI CCWGG 3 cut(s) 464, 648, 679
AloI GAACNNNNNNTCC 2 cut(s) 209, 241
AluBI AGCT 2 cut(s) 78, 628
AluI AGCT 2 cut(s) 78, 628
Alw26I GTCTC 2 cut(s) 553, 702
AlwI GGATC 1 cut(s) 543
AoxI GGCC 2 cut(s) 129, 165
ApeKI GCWGC 1 cut(s) 49
ApoI RAATTY 3 cut(s) 250, 318, 409
ArsI GACNNNNNNTTYG 4 cut(s) 209, 241, 777, 809
AspLEI GCGC 2 cut(s) 8, 49
AspS9I GGNCC 3 cut(s) 106, 130, 165
AsuC2I CCSGG 2 cut(s) 133, 143
AsuHPI GGTGA 2 cut(s) 256, 638
AvaII GGWCC 1 cut(s) 106
BbvI GCAGC 1 cut(s) 61
BccI CCATC 1 cut(s) 299
BciT130I CCWGG 3 cut(s) 466, 650, 681
BclI TGATCA 1 cut(s) 738
BcnI CCSGG 2 cut(s) 133, 143
BcoDI GTCTC 2 cut(s) 553, 702
BfaI CTAG 2 cut(s) 326, 822
BfoI RGCGCY 1 cut(s) 9
BisI GCNGC 1 cut(s) 50
BlsI GCNGC 1 cut(s) 51
Bme1390I CCNGG 5 cut(s) 133, 143, 466, 650, 681
Bme18I GGWCC 1 cut(s) 106
BmgT120I GGNCC 3 cut(s) 106, 130, 165
BmiI GGNNCC 2 cut(s) 108, 536
BmrFI CCNGG 5 cut(s) 133, 143, 466, 650, 681
BmrI ACTGGG 1 cut(s) 697
BmuI ACTGGG 1 cut(s) 697
BpuMI CCSGG 2 cut(s) 133, 143
Bsa29I ATCGAT 2 cut(s) 377, 768
BsaBI GATNNNNATC 1 cut(s) 743
BsaJI CCNNGG 4 cut(s) 53, 336, 541, 679
BsaXI ACNNNNNCTCC 2 cut(s) 699, 729
Bsc4I CCNNNNNNNGG 1 cut(s) 59
Bse1I ACTGG 2 cut(s) 614, 692
Bse8I GATNNNNATC 1 cut(s) 743
BseBI CCWGG 3 cut(s) 466, 650, 681
BseCI ATCGAT 2 cut(s) 377, 768
BseDI CCNNGG 4 cut(s) 53, 336, 541, 679
BseGI GGATG 1 cut(s) 264
BseJI GATNNNNATC 1 cut(s) 743
BseLI CCNNNNNNNGG 1 cut(s) 59
BseMII CTCAG 1 cut(s) 105
BseNI ACTGG 2 cut(s) 614, 692
BseXI GCAGC 1 cut(s) 61
Bsh1236I CGCG 2 cut(s) 35, 153
BshFI GGCC 2 cut(s) 131, 167
BshVI ATCGAT 2 cut(s) 377, 768
BsiSI CCGG 2 cut(s) 133, 142
BslI CCNNNNNNNGG 1 cut(s) 59
BsmAI GTCTC 2 cut(s) 553, 702
BsnI GGCC 2 cut(s) 131, 167
Bsp1407I TGTACA 1 cut(s) 99
Bsp143I GATC 5 cut(s) 394, 548, 738, 744, 765
BspACI CCGC 3 cut(s) 35, 153, 789
BspANI GGCC 2 cut(s) 131, 167
BspCNI CTCAG 1 cut(s) 106
BspDI ATCGAT 2 cut(s) 377, 768
BspFNI CGCG 2 cut(s) 35, 153
BspLI GGNNCC 2 cut(s) 108, 536
BspPI GGATC 1 cut(s) 543
BsrGI TGTACA 1 cut(s) 99
BsrI ACTGG 2 cut(s) 614, 692
BssECI CCNNGG 4 cut(s) 53, 336, 541, 679
BssMI GATC 5 cut(s) 394, 548, 738, 744, 765
BssT1I CCWWGG 2 cut(s) 336, 541
Bst2UI CCWGG 3 cut(s) 466, 650, 681
Bst6I CTCTTC 1 cut(s) 530
BstAUI TGTACA 1 cut(s) 99
BstDEI CTNAG 1 cut(s) 114
BstEII GGTNACC 1 cut(s) 644
BstF5I GGATG 1 cut(s) 264
BstFNI CGCG 2 cut(s) 35, 153
BstH2I RGCGCY 1 cut(s) 9
BstHHI GCGC 2 cut(s) 8, 49
BstKTI GATC 5 cut(s) 397, 551, 741, 747, 768
BstMAI GTCTC 2 cut(s) 553, 702
BstMBI GATC 5 cut(s) 394, 548, 738, 744, 765
BstMWI GCNNNNNNNGC 4 cut(s) 55, 164, 322, 576
BstNI CCWGG 3 cut(s) 466, 650, 681
BstNSI RCATGY 1 cut(s) 593
BstPI GGTNACC 1 cut(s) 644
BstSCI CCNGG 5 cut(s) 131, 141, 464, 648, 679
BstUI CGCG 2 cut(s) 35, 153
BstV1I GCAGC 1 cut(s) 61
BstX2I RGATCY 1 cut(s) 548
BstYI RGATCY 1 cut(s) 548
Bsu15I ATCGAT 2 cut(s) 377, 768
BsuRI GGCC 2 cut(s) 131, 167
BsuTUI ATCGAT 2 cut(s) 377, 768
BtsCI GGATG 1 cut(s) 264
BtsIMutI CAGTG 1 cut(s) 621
CfoI GCGC 2 cut(s) 8, 49
Cfr13I GGNCC 3 cut(s) 106, 130, 165
ClaI ATCGAT 2 cut(s) 377, 768
CseI GACGC 1 cut(s) 41
CsiI ACCWGGT 1 cut(s) 464
Csp6I GTAC 2 cut(s) 100, 774
CspCI CAANNNNNGTGG 2 cut(s) 449, 484
CviAII CATG 5 cut(s) 103, 590, 596, 701, 731
CviQI GTAC 2 cut(s) 100, 774
DdeI CTNAG 1 cut(s) 114
DpnI GATC 5 cut(s) 396, 550, 740, 746, 767
DpnII GATC 5 cut(s) 394, 548, 738, 744, 765
Eam1104I CTCTTC 1 cut(s) 530
EarI CTCTTC 1 cut(s) 530
Eco130I CCWWGG 2 cut(s) 336, 541
Eco32I GATATC 1 cut(s) 268
Eco47I GGWCC 1 cut(s) 106
Eco91I GGTNACC 1 cut(s) 644
EcoO65I GGTNACC 1 cut(s) 644
EcoRI GAATTC 1 cut(s) 250
EcoRII CCWGG 3 cut(s) 464, 648, 679
EcoRV GATATC 1 cut(s) 268
EcoT14I CCWWGG 2 cut(s) 336, 541
ErhI CCWWGG 2 cut(s) 336, 541
FaeI CATG 5 cut(s) 106, 593, 599, 704, 734
FatI CATG 5 cut(s) 102, 589, 595, 700, 730
FbaI TGATCA 1 cut(s) 738
FblI GTMKAC 1 cut(s) 801
Fnu4HI GCNGC 1 cut(s) 50
FokI GGATG 1 cut(s) 271
Fsp4HI GCNGC 1 cut(s) 50
FspBI CTAG 2 cut(s) 326, 822
FspI TGCGCA 1 cut(s) 48
GlaI GCGC 2 cut(s) 7, 48
GluI GCNGC 1 cut(s) 50
HaeII RGCGCY 1 cut(s) 9
HaeIII GGCC 2 cut(s) 131, 167
HapII CCGG 2 cut(s) 133, 142
HgaI GACGC 1 cut(s) 41
HhaI GCGC 2 cut(s) 8, 49
Hin1II CATG 5 cut(s) 106, 593, 599, 704, 734
Hin6I GCGC 2 cut(s) 6, 47
HinP1I GCGC 2 cut(s) 6, 47
HincII GTYRAC 1 cut(s) 721
HindII GTYRAC 1 cut(s) 721
HinfI GANTC 3 cut(s) 182, 428, 803
HpaII CCGG 2 cut(s) 133, 142
HphI GGTGA 2 cut(s) 256, 638
Hpy166II GTNNAC 3 cut(s) 217, 721, 802
Hpy188I TCNGA 3 cut(s) 31, 441, 661
Hpy188III TCNNGA 2 cut(s) 113, 742
Hpy8I GTNNAC 3 cut(s) 217, 721, 802
HpyCH4V TGCA 3 cut(s) 123, 285, 579
HpyF10VI GCNNNNNNNGC 4 cut(s) 55, 164, 322, 576
HpyF3I CTNAG 1 cut(s) 114
Hsp92II CATG 5 cut(s) 106, 593, 599, 704, 734
HspAI GCGC 2 cut(s) 6, 47
Ksp22I TGATCA 1 cut(s) 738
Kzo9I GATC 5 cut(s) 394, 548, 738, 744, 765
LmnI GCTCC 2 cut(s) 540, 586
Lsp1109I GCAGC 1 cut(s) 61
MabI ACCWGGT 1 cut(s) 464
MaeI CTAG 2 cut(s) 326, 822
MaeIII GTNAC 1 cut(s) 644
MalI GATC 5 cut(s) 396, 550, 740, 746, 767
MboI GATC 5 cut(s) 394, 548, 738, 744, 765
MboII GAAGA 4 cut(s) 259, 354, 411, 517
MflI RGATCY 1 cut(s) 548
MlyI GAGTC 1 cut(s) 797
MmeI TCCRAC 1 cut(s) 481
MnlI CCTC 7 cut(s) 31, 48, 120, 255, 533, 562, 738
MseI TTAA 1 cut(s) 480
MslI CAYNNNNRTG 1 cut(s) 594
MspI CCGG 2 cut(s) 133, 142
MspR9I CCNGG 5 cut(s) 133, 143, 466, 650, 681
MvaI CCWGG 3 cut(s) 466, 650, 681
MvnI CGCG 2 cut(s) 35, 153
MwoI GCNNNNNNNGC 4 cut(s) 55, 164, 322, 576
NciI CCSGG 2 cut(s) 133, 143
NdeII GATC 5 cut(s) 394, 548, 738, 744, 765
NlaIII CATG 5 cut(s) 106, 593, 599, 704, 734
NlaIV GGNNCC 2 cut(s) 108, 536
NmeAIII GCCGAG 2 cut(s) 78, 596
NmuCI GTSAC 1 cut(s) 644
NsbI TGCGCA 1 cut(s) 48
NspI RCATGY 1 cut(s) 593
PfeI GAWTC 2 cut(s) 182, 428
PflFI GACNNNGTC 1 cut(s) 564
PkrI GCNGC 1 cut(s) 51
PleI GAGTC 1 cut(s) 797
PpsI GAGTC 1 cut(s) 797
Psp6I CCWGG 3 cut(s) 464, 648, 679
PspEI GGTNACC 1 cut(s) 644
PspGI CCWGG 3 cut(s) 464, 648, 679
PspN4I GGNNCC 2 cut(s) 108, 536
PspPI GGNCC 3 cut(s) 106, 130, 165
PsuI RGATCY 1 cut(s) 548
PsyI GACNNNGTC 1 cut(s) 564
RsaI GTAC 2 cut(s) 101, 775
RsaNI GTAC 2 cut(s) 100, 774
RseI CAYNNNNRTG 1 cut(s) 594
SaqAI TTAA 1 cut(s) 480
SatI GCNGC 1 cut(s) 50
Sau3AI GATC 5 cut(s) 394, 548, 738, 744, 765
Sau96I GGNCC 3 cut(s) 106, 130, 165
SchI GAGTC 1 cut(s) 797
ScrFI CCNGG 5 cut(s) 133, 143, 466, 650, 681
SetI ASST 7 cut(s) 80, 209, 225, 437, 467, 543, 630
SexAI ACCWGGT 1 cut(s) 464
SinI GGWCC 1 cut(s) 106
SmiMI CAYNNNNRTG 1 cut(s) 594
SsiI CCGC 3 cut(s) 35, 153, 789
SspI AATATT 1 cut(s) 665
SspMI CTAG 2 cut(s) 326, 822
StyD4I CCNGG 5 cut(s) 131, 141, 464, 648, 679
StyI CCWWGG 2 cut(s) 336, 541
TaqI TCGA 7 cut(s) 185, 228, 356, 377, 397, 755, 768
TatI WGTACW 2 cut(s) 99, 773
TfiI GAWTC 2 cut(s) 182, 428
Tru1I TTAA 1 cut(s) 480
Tru9I TTAA 1 cut(s) 480
TscAI CASTG 1 cut(s) 621
TseFI GTSAC 1 cut(s) 644
TseI GCWGC 1 cut(s) 49
Tsp45I GTSAC 1 cut(s) 644
TspDTI ATGAA 6 cut(s) 163, 246, 338, 403, 441, 584
TspRI CASTG 1 cut(s) 621
Tth111I GACNNNGTC 1 cut(s) 564
VpaK11BI GGWCC 1 cut(s) 106
XapI RAATTY 3 cut(s) 250, 318, 409
XceI RCATGY 1 cut(s) 593
XmiI GTMKAC 1 cut(s) 801
XspI CTAG 2 cut(s) 326, 822
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.