Prupe.2G156400_v2.0.a1

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0012773
Physical Location & Seq
Reverse (-)
20983224 .. 20985960
2737 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G156400.1

Sequence Viewer

Length: 846 bp
ATGGGTGCTAATTTATCGGGTAGAGTTTCGGATAAGGAGGGTTTGGTGCAGCCAAGGCTTGGGGATTTACCAGAGAGCTGTGTGGCAATGGTTTTGATGAACATGGACCCTCCTGAGATCTGCAAATTGGCCCGGTTGAACCGGGCTTTTCGCGGTGCTTCATCGGCTGATTTCATCTGGGAATCGAAGTTGCCACCGAATTATCGGTTTATTGTAGACAGGGTGTTTGATGAAACTACTAAGTTGAATATTTCAGGGAAGAGGGATATCTATGCCAGGCTTTGCAGGTCTAAGTCCTTTGATGGTGGCACAAAGGAAATTTGGCTAGATAAAAACAAGGGTGGTATCTGTTTGTCGATTTCTTCGAAGGCGTTATCGATTACAGGGATAGATGATAGGAGGTATTGGAATTTCATAGCAATTGATGAATCTAGATTCCAGATAGTCGCCTATCTCCAACAAACCTGGTGGTTTGAAGTCAGTGGAGAGTTTGAGTTTCAATTTCCATTAGGTAGATACAGCCTGTTCTTTAGGCTCCACCTTGGCAGATCCTCGAAGAGATTGGGTCGCAGAGTATGCAATTCTGAGCATGTTCATGGCTGGAACAAAAAACCAGTGAGGTTTGAGCTATCAACTTCTAATGGTCACCGTGCTGTATCCCAATGTTACTTGGATAATCCTGGAAACTGGGTCGATTACCATGTGGGAGATTTTGTTGTTGACAATCCTCATGCTTTGATCAAGATCAAATATTCGATGACCCAGATCGATTGCACTCACACCAAAGGCGGTGTTTGCGTAGACTCTGTGTTAATATACCCTAGTGGTGTAGCAAAAGAGCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box PP2

Protein Analysis

282

Amino Acids

31.97

Weight (kDa)

8.96

Isoelectric Point (pI)

31.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012773)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G61060 AT3G61060
fragaria_vesca FvH4_7g13220
malus_domestica MD01G1050900.v1.1
prunus_persica Prupe.2G156400_v2.0.a1
pyrus_communis pycom01g07570
rosa_chinensis RchiOBHm_Chr1g0352361
rosa_laevigata RLG00000028336
rosa_multiflora Rmu_co8012550.1_g000001 Rmu_sc0002244.1_g000039 Rmu_ssc0000172.1_g000009
rosa_roxburghii Rroxscaffold_4G00302960
rosa_rugosa Rorug01G0227900 Rorug01G0228000
rosa_samantha Rh1BG212400 Rh1DG238800
rosa_wichuraiana Rw1G020910 Rw1G021070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 276
AccB7I CCANNNNNTGG 1 cut(s) 59
AccI GTMKAC 2 cut(s) 216, 801
AccII CGCG 1 cut(s) 153
AciI CCGC 2 cut(s) 153, 789
AclWI GGATC 1 cut(s) 543
AcsI RAATTY 2 cut(s) 318, 409
AfiI CCNNNNNNNGG 1 cut(s) 59
AgsI TTSAA 4 cut(s) 139, 247, 476, 500
AjnI CCWGG 3 cut(s) 275, 464, 679
AluBI AGCT 2 cut(s) 78, 628
AluI AGCT 2 cut(s) 78, 628
AlwI GGATC 1 cut(s) 543
AoxI GGCC 1 cut(s) 129
ApeKI GCWGC 1 cut(s) 49
ApoI RAATTY 2 cut(s) 318, 409
ArsI GACNNNNNNTTYG 2 cut(s) 209, 241
AspS9I GGNCC 2 cut(s) 106, 130
AsuC2I CCSGG 2 cut(s) 133, 143
AsuHPI GGTGA 1 cut(s) 638
AsuII TTCGAA 1 cut(s) 365
AvaII GGWCC 1 cut(s) 106
BbvI GCAGC 1 cut(s) 61
BccI CCATC 1 cut(s) 296
BciT130I CCWGG 3 cut(s) 277, 466, 681
BciVI GTATCC 1 cut(s) 667
BclI TGATCA 1 cut(s) 738
BcnI CCSGG 2 cut(s) 133, 143
BfaI CTAG 3 cut(s) 326, 432, 822
BfuAI ACCTGC 1 cut(s) 276
BfuI GTATCC 1 cut(s) 667
BglII AGATCT 1 cut(s) 117
BisI GCNGC 1 cut(s) 50
BlsI GCNGC 1 cut(s) 51
Bme1390I CCNGG 5 cut(s) 133, 143, 277, 466, 681
Bme18I GGWCC 1 cut(s) 106
BmgT120I GGNCC 2 cut(s) 106, 130
BmiI GGNNCC 2 cut(s) 108, 536
BmrFI CCNGG 5 cut(s) 133, 143, 277, 466, 681
BmrI ACTGGG 1 cut(s) 697
BmuI ACTGGG 1 cut(s) 697
Bpu14I TTCGAA 1 cut(s) 365
BpuMI CCSGG 2 cut(s) 133, 143
Bsa29I ATCGAT 2 cut(s) 377, 768
BsaBI GATNNNNATC 1 cut(s) 743
BsaJI CCNNGG 2 cut(s) 53, 541
BsaXI ACNNNNNCTCC 2 cut(s) 699, 729
Bsc4I CCNNNNNNNGG 1 cut(s) 59
Bse1I ACTGG 2 cut(s) 614, 692
Bse3DI GCAATG 1 cut(s) 93
Bse8I GATNNNNATC 1 cut(s) 743
BseBI CCWGG 3 cut(s) 277, 466, 681
BseCI ATCGAT 2 cut(s) 377, 768
BseDI CCNNGG 2 cut(s) 53, 541
BseJI GATNNNNATC 1 cut(s) 743
BseLI CCNNNNNNNGG 1 cut(s) 59
BseMI GCAATG 1 cut(s) 93
BseMII CTCAG 2 cut(s) 105, 576
BseNI ACTGG 2 cut(s) 614, 692
BseXI GCAGC 1 cut(s) 61
BsgI GTGCAG 1 cut(s) 68
Bsh1236I CGCG 1 cut(s) 153
BshFI GGCC 1 cut(s) 131
BshVI ATCGAT 2 cut(s) 377, 768
BsiSI CCGG 2 cut(s) 133, 142
BslI CCNNNNNNNGG 1 cut(s) 59
BsnI GGCC 1 cut(s) 131
Bsp119I TTCGAA 1 cut(s) 365
Bsp143I GATC 5 cut(s) 117, 548, 738, 744, 765
BspACI CCGC 2 cut(s) 153, 789
BspANI GGCC 1 cut(s) 131
BspCNI CTCAG 2 cut(s) 106, 577
BspDI ATCGAT 2 cut(s) 377, 768
BspFNI CGCG 1 cut(s) 153
BspLI GGNNCC 2 cut(s) 108, 536
BspMI ACCTGC 1 cut(s) 276
BspPI GGATC 1 cut(s) 543
BspT104I TTCGAA 1 cut(s) 365
BsrDI GCAATG 1 cut(s) 93
BsrI ACTGG 2 cut(s) 614, 692
BssECI CCNNGG 2 cut(s) 53, 541
BssMI GATC 5 cut(s) 117, 548, 738, 744, 765
BssT1I CCWWGG 2 cut(s) 53, 541
Bst2UI CCWGG 3 cut(s) 277, 466, 681
Bst4CI ACNGT 1 cut(s) 650
Bst6I CTCTTC 2 cut(s) 254, 551
BstAPI GCANNNNNTGC 1 cut(s) 576
BstBI TTCGAA 1 cut(s) 365
BstDEI CTNAG 5 cut(s) 114, 240, 291, 585, 843
BstEII GGTNACC 1 cut(s) 644
BstFNI CGCG 1 cut(s) 153
BstKTI GATC 5 cut(s) 120, 551, 741, 747, 768
BstMBI GATC 5 cut(s) 117, 548, 738, 744, 765
BstMWI GCNNNNNNNGC 4 cut(s) 55, 164, 576, 795
BstNI CCWGG 3 cut(s) 277, 466, 681
BstNSI RCATGY 1 cut(s) 593
BstPI GGTNACC 1 cut(s) 644
BstSCI CCNGG 5 cut(s) 131, 141, 275, 464, 679
BstUI CGCG 1 cut(s) 153
BstV1I GCAGC 1 cut(s) 61
BstX2I RGATCY 2 cut(s) 117, 548
BstYI RGATCY 2 cut(s) 117, 548
Bsu15I ATCGAT 2 cut(s) 377, 768
BsuI GTATCC 1 cut(s) 667
BsuRI GGCC 1 cut(s) 131
BsuTUI ATCGAT 2 cut(s) 377, 768
BtsIMutI CAGTG 2 cut(s) 487, 621
BveI ACCTGC 1 cut(s) 276
Cfr13I GGNCC 2 cut(s) 106, 130
ClaI ATCGAT 2 cut(s) 377, 768
CsiI ACCWGGT 1 cut(s) 464
CspCI CAANNNNNGTGG 2 cut(s) 449, 484
CviAII CATG 5 cut(s) 103, 590, 596, 701, 731
DdeI CTNAG 5 cut(s) 114, 240, 291, 585, 843
DpnI GATC 5 cut(s) 119, 550, 740, 746, 767
DpnII GATC 5 cut(s) 117, 548, 738, 744, 765
Eam1104I CTCTTC 2 cut(s) 254, 551
EarI CTCTTC 2 cut(s) 254, 551
Eco130I CCWWGG 2 cut(s) 53, 541
Eco32I GATATC 1 cut(s) 268
Eco47I GGWCC 1 cut(s) 106
Eco91I GGTNACC 1 cut(s) 644
EcoO65I GGTNACC 1 cut(s) 644
EcoRII CCWGG 3 cut(s) 275, 464, 679
EcoRV GATATC 1 cut(s) 268
EcoT14I CCWWGG 2 cut(s) 53, 541
ErhI CCWWGG 2 cut(s) 53, 541
FaeI CATG 5 cut(s) 106, 593, 599, 704, 734
FaiI YATR 9 cut(s) 104, 273, 416, 577, 591, 597, 702, 732, 817
FatI CATG 5 cut(s) 102, 589, 595, 700, 730
FbaI TGATCA 1 cut(s) 738
FblI GTMKAC 2 cut(s) 216, 801
Fnu4HI GCNGC 1 cut(s) 50
Fsp4HI GCNGC 1 cut(s) 50
FspBI CTAG 3 cut(s) 326, 432, 822
GluI GCNGC 1 cut(s) 50
HaeIII GGCC 1 cut(s) 131
HapII CCGG 2 cut(s) 133, 142
Hin1II CATG 5 cut(s) 106, 593, 599, 704, 734
HincII GTYRAC 1 cut(s) 721
HindII GTYRAC 1 cut(s) 721
HinfI GANTC 4 cut(s) 182, 428, 435, 803
HpaII CCGG 2 cut(s) 133, 142
HphI GGTGA 1 cut(s) 638
Hpy166II GTNNAC 3 cut(s) 217, 721, 802
Hpy188I TCNGA 2 cut(s) 31, 586
Hpy188III TCNNGA 4 cut(s) 113, 432, 439, 742
Hpy8I GTNNAC 3 cut(s) 217, 721, 802
HpyAV CCTTC 1 cut(s) 361
HpyCH4III ACNGT 1 cut(s) 650
HpyCH4V TGCA 5 cut(s) 49, 123, 285, 579, 774
HpyF10VI GCNNNNNNNGC 4 cut(s) 55, 164, 576, 795
HpyF3I CTNAG 5 cut(s) 114, 240, 291, 585, 843
Hsp92II CATG 5 cut(s) 106, 593, 599, 704, 734
Ksp22I TGATCA 1 cut(s) 738
Kzo9I GATC 5 cut(s) 117, 548, 738, 744, 765
LmnI GCTCC 1 cut(s) 540
Lsp1109I GCAGC 1 cut(s) 61
MabI ACCWGGT 1 cut(s) 464
MaeI CTAG 3 cut(s) 326, 432, 822
MaeIII GTNAC 2 cut(s) 644, 665
MalI GATC 5 cut(s) 119, 550, 740, 746, 767
MboI GATC 5 cut(s) 117, 548, 738, 744, 765
MboII GAAGA 3 cut(s) 271, 354, 568
MfeI CAATTG 1 cut(s) 420
MflI RGATCY 2 cut(s) 117, 548
MluCI AATT 8 cut(s) 10, 125, 199, 318, 409, 420, 500, 580
MlyI GAGTC 1 cut(s) 797
MmeI TCCRAC 1 cut(s) 481
MnlI CCTC 7 cut(s) 31, 120, 255, 393, 562, 612, 738
MseI TTAA 1 cut(s) 812
MslI CAYNNNNRTG 1 cut(s) 594
MspI CCGG 2 cut(s) 133, 142
MspR9I CCNGG 5 cut(s) 133, 143, 277, 466, 681
MunI CAATTG 1 cut(s) 420
MvaI CCWGG 3 cut(s) 277, 466, 681
MvnI CGCG 1 cut(s) 153
MwoI GCNNNNNNNGC 4 cut(s) 55, 164, 576, 795
NciI CCSGG 2 cut(s) 133, 143
NdeII GATC 5 cut(s) 117, 548, 738, 744, 765
NlaIII CATG 5 cut(s) 106, 593, 599, 704, 734
NlaIV GGNNCC 2 cut(s) 108, 536
NmuCI GTSAC 1 cut(s) 644
NspI RCATGY 1 cut(s) 593
NspV TTCGAA 1 cut(s) 365
PcsI WCGNNNNNNNCGW 1 cut(s) 362
PfeI GAWTC 3 cut(s) 182, 428, 435
PflMI CCANNNNNTGG 1 cut(s) 59
PfoI TCCNGGA 1 cut(s) 679
PkrI GCNGC 1 cut(s) 51
PleI GAGTC 1 cut(s) 797
PpsI GAGTC 1 cut(s) 797
Psp6I CCWGG 3 cut(s) 275, 464, 679
PspEI GGTNACC 1 cut(s) 644
PspGI CCWGG 3 cut(s) 275, 464, 679
PspN4I GGNNCC 2 cut(s) 108, 536
PspPI GGNCC 2 cut(s) 106, 130
PsuI RGATCY 2 cut(s) 117, 548
RseI CAYNNNNRTG 1 cut(s) 594
SaqAI TTAA 1 cut(s) 812
SatI GCNGC 1 cut(s) 50
Sau3AI GATC 5 cut(s) 117, 548, 738, 744, 765
Sau96I GGNCC 2 cut(s) 106, 130
SchI GAGTC 1 cut(s) 797
ScrFI CCNGG 5 cut(s) 133, 143, 277, 466, 681
SetI ASST 8 cut(s) 80, 290, 404, 467, 514, 543, 623, 630
SexAI ACCWGGT 1 cut(s) 464
SfuI TTCGAA 1 cut(s) 365
SinI GGWCC 1 cut(s) 106
SmiMI CAYNNNNRTG 1 cut(s) 594
Sse9I AATT 8 cut(s) 10, 125, 199, 318, 409, 420, 500, 580
SsiI CCGC 2 cut(s) 153, 789
SspI AATATT 2 cut(s) 250, 752
SspMI CTAG 3 cut(s) 326, 432, 822
StyD4I CCNGG 5 cut(s) 131, 141, 275, 464, 679
StyI CCWWGG 2 cut(s) 53, 541
TaaI ACNGT 1 cut(s) 650
TaqI TCGA 8 cut(s) 185, 356, 365, 377, 554, 693, 755, 768
TasI AATT 8 cut(s) 10, 125, 199, 318, 409, 420, 500, 580
TfiI GAWTC 3 cut(s) 182, 428, 435
Tru1I TTAA 1 cut(s) 812
Tru9I TTAA 1 cut(s) 812
TscAI CASTG 2 cut(s) 487, 621
TseFI GTSAC 1 cut(s) 644
TseI GCWGC 1 cut(s) 49
Tsp45I GTSAC 1 cut(s) 644
TspDTI ATGAA 7 cut(s) 113, 150, 163, 246, 403, 441, 584
TspRI CASTG 2 cut(s) 487, 621
Van91I CCANNNNNTGG 1 cut(s) 59
VpaK11BI GGWCC 1 cut(s) 106
XapI RAATTY 2 cut(s) 318, 409
XbaI TCTAGA 1 cut(s) 431
XceI RCATGY 1 cut(s) 593
XmiI GTMKAC 2 cut(s) 216, 801
XspI CTAG 3 cut(s) 326, 432, 822
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.