AT3G61660

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0014270
Physical Location & Seq
Forward (+)
22815989 .. 22816663
675 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G61660.2

Sequence Viewer

Length: 390 bp
ATGGTTGATGATGATGATCGTATACTATGGGATTGTGGAAGTCCACTCTATGATTCCTACGAGCTCGTTTCTCTTACTCACATCATTGAACGCCATTTCATGTCTCTACCTTCTCTTGCTGGCGCCGGAAAAGTTTGCTGCTCTCGAAGACCGTCTGATCTGGAAGAAAAGGCCAATCGTGGGGCCAACACCGTCGTTGATCTGTGTTGTTCCTCTGATTCGACGACTGGTAAACTGTTGTGCGGTGCTTTTGGAACCAAATGGTGGAAGAGAAAGCAAAACACCGAAGCTGTCGTCGATAATTACAACAACAAGAAGAAGAATATGTTTTGTCGGATCCTCTCTAAGATAAGGATTTCTACAACAAGATCTGGTTCTTCGAAGATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

129

Amino Acids

14.47

Weight (kDa)

8.88

Isoelectric Point (pI)

51.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014270)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G61660 AT3G61660
fragaria_vesca FvH4_5g04090 FvH4_7g16050
malus_domestica MD07G1146000.v1.1
prunus_persica Prupe.2G184300_v2.0.a1 Prupe.5G115500_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0358991 RchiOBHm_Chr7g0195411
rosa_multiflora Rmu_sc0004044.1_g000004
rosa_roxburghii Rroxscaffold_4G00297480
rosa_rugosa Rorug01G0266900
rosa_samantha Rh1AG280200 Rh1BG247200 Rh1CG264600 Rh1DG275500
rosa_wichuraiana Rw1G024910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 122
AccB7I CCANNNNNTGG 1 cut(s) 264
AccI GTMKAC 1 cut(s) 22
AciI CCGC 1 cut(s) 243
AclWI GGATC 2 cut(s) 331, 344
AcyI GRCGYC 1 cut(s) 123
AfiI CCNNNNNNNGG 2 cut(s) 180, 264
AgsI TTSAA 1 cut(s) 89
AluBI AGCT 2 cut(s) 64, 290
AluI AGCT 2 cut(s) 64, 290
Alw21I GWGCWC 1 cut(s) 66
Alw26I GTCTC 1 cut(s) 108
AlwI GGATC 2 cut(s) 331, 344
AoxI GGCC 2 cut(s) 171, 183
ApeKI GCWGC 1 cut(s) 138
ArsI GACNNNNNNTTYG 2 cut(s) 279, 311
AspLEI GCGC 1 cut(s) 125
AspS9I GGNCC 1 cut(s) 183
AsuII TTCGAA 1 cut(s) 380
BamHI GGATCC 1 cut(s) 336
BanI GGYRCC 1 cut(s) 122
BanII GRGCYC 1 cut(s) 66
BbsI GAAGAC 1 cut(s) 154
Bbv12I GWGCWC 1 cut(s) 66
BbvI GCAGC 1 cut(s) 125
BcoDI GTCTC 1 cut(s) 108
BfoI RGCGCY 1 cut(s) 126
BglII AGATCT 1 cut(s) 368
BisI GCNGC 1 cut(s) 139
BlsI GCNGC 1 cut(s) 140
BmgT120I GGNCC 1 cut(s) 183
BmiI GGNNCC 4 cut(s) 124, 184, 256, 338
BpiI GAAGAC 1 cut(s) 154
Bpu14I TTCGAA 1 cut(s) 380
BsaBI GATNNNNATC 1 cut(s) 15
BsaHI GRCGYC 1 cut(s) 123
Bsc4I CCNNNNNNNGG 2 cut(s) 180, 264
Bse1I ACTGG 1 cut(s) 232
Bse8I GATNNNNATC 1 cut(s) 15
BseJI GATNNNNATC 1 cut(s) 15
BseLI CCNNNNNNNGG 2 cut(s) 180, 264
BseNI ACTGG 1 cut(s) 232
BseXI GCAGC 1 cut(s) 125
BshFI GGCC 2 cut(s) 173, 185
BshNI GGYRCC 1 cut(s) 122
BsiHKAI GWGCWC 1 cut(s) 66
BsiSI CCGG 1 cut(s) 126
BslI CCNNNNNNNGG 2 cut(s) 180, 264
BsmAI GTCTC 1 cut(s) 108
BsnI GGCC 2 cut(s) 173, 185
Bsp119I TTCGAA 1 cut(s) 380
Bsp1286I GDGCHC 1 cut(s) 66
Bsp143I GATC 5 cut(s) 16, 157, 199, 336, 368
BspACI CCGC 1 cut(s) 243
BspANI GGCC 2 cut(s) 173, 185
BspLI GGNNCC 4 cut(s) 124, 184, 256, 338
BspPI GGATC 2 cut(s) 331, 344
BspT104I TTCGAA 1 cut(s) 380
BspT107I GGYRCC 1 cut(s) 122
BsrI ACTGG 1 cut(s) 232
BssMI GATC 5 cut(s) 16, 157, 199, 336, 368
BssNAI GTATAC 1 cut(s) 23
BssNI GRCGYC 1 cut(s) 123
Bst1107I GTATAC 1 cut(s) 23
Bst4CI ACNGT 3 cut(s) 153, 193, 237
Bst6I CTCTTC 1 cut(s) 263
BstACI GRCGYC 1 cut(s) 123
BstBI TTCGAA 1 cut(s) 380
BstC8I GCNNGC 1 cut(s) 121
BstDEI CTNAG 1 cut(s) 345
BstH2I RGCGCY 1 cut(s) 126
BstHHI GCGC 1 cut(s) 125
BstKTI GATC 5 cut(s) 19, 160, 202, 339, 371
BstMAI GTCTC 1 cut(s) 108
BstMBI GATC 5 cut(s) 16, 157, 199, 336, 368
BstV1I GCAGC 1 cut(s) 125
BstV2I GAAGAC 1 cut(s) 154
BstX2I RGATCY 2 cut(s) 336, 368
BstYI RGATCY 2 cut(s) 336, 368
BstZ17I GTATAC 1 cut(s) 23
BsuRI GGCC 2 cut(s) 173, 185
Cac8I GCNNGC 1 cut(s) 121
CfoI GCGC 1 cut(s) 125
Cfr13I GGNCC 1 cut(s) 183
CviAII CATG 1 cut(s) 100
CviJI RGCY 4 cut(s) 64, 173, 185, 290
CviKI_1 RGCY 4 cut(s) 64, 173, 185, 290
DdeI CTNAG 1 cut(s) 345
DinI GGCGCC 1 cut(s) 124
DpnI GATC 5 cut(s) 18, 159, 201, 338, 370
DpnII GATC 5 cut(s) 16, 157, 199, 336, 368
Eam1104I CTCTTC 1 cut(s) 263
EarI CTCTTC 1 cut(s) 263
Ecl136II GAGCTC 1 cut(s) 64
Eco24I GRGCYC 1 cut(s) 66
Eco53kI GAGCTC 1 cut(s) 64
EcoICRI GAGCTC 1 cut(s) 64
EcoT38I GRGCYC 1 cut(s) 66
EgeI GGCGCC 1 cut(s) 124
EheI GGCGCC 1 cut(s) 124
FaeI CATG 1 cut(s) 103
FaiI YATR 5 cut(s) 23, 28, 51, 101, 326
FatI CATG 1 cut(s) 99
FblI GTMKAC 1 cut(s) 22
Fnu4HI GCNGC 1 cut(s) 139
FriOI GRGCYC 1 cut(s) 66
Fsp4HI GCNGC 1 cut(s) 139
GlaI GCGC 1 cut(s) 124
GluI GCNGC 1 cut(s) 139
HaeII RGCGCY 1 cut(s) 126
HaeIII GGCC 2 cut(s) 173, 185
HapII CCGG 1 cut(s) 126
HhaI GCGC 1 cut(s) 125
Hin1I GRCGYC 1 cut(s) 123
Hin1II CATG 1 cut(s) 103
Hin6I GCGC 1 cut(s) 123
HinP1I GCGC 1 cut(s) 123
HinfI GANTC 2 cut(s) 53, 218
HpaII CCGG 1 cut(s) 126
Hpy166II GTNNAC 3 cut(s) 23, 44, 233
Hpy188I TCNGA 3 cut(s) 157, 217, 336
Hpy188III TCNNGA 2 cut(s) 144, 161
Hpy8I GTNNAC 3 cut(s) 23, 44, 233
Hpy99I CGWCG 3 cut(s) 197, 226, 299
HpyAV CCTTC 1 cut(s) 120
HpyCH4III ACNGT 3 cut(s) 153, 193, 237
HpyF3I CTNAG 1 cut(s) 345
Hsp92I GRCGYC 1 cut(s) 123
Hsp92II CATG 1 cut(s) 103
HspAI GCGC 1 cut(s) 123
KasI GGCGCC 1 cut(s) 122
Kzo9I GATC 5 cut(s) 16, 157, 199, 336, 368
LpnPI CCDG 5 cut(s) 105, 139, 146, 213, 357
Lsp1109I GCAGC 1 cut(s) 125
MalI GATC 5 cut(s) 18, 159, 201, 338, 370
MboI GATC 5 cut(s) 16, 157, 199, 336, 368
MboII GAAGA 6 cut(s) 159, 176, 280, 328, 331, 369
MflI RGATCY 2 cut(s) 336, 368
MhlI GDGCHC 1 cut(s) 66
MluCI AATT 1 cut(s) 301
Mly113I GGCGCC 1 cut(s) 123
MmeI TCCRAC 1 cut(s) 314
MnlI CCTC 2 cut(s) 223, 350
MspI CCGG 1 cut(s) 126
NarI GGCGCC 1 cut(s) 123
NdeII GATC 5 cut(s) 16, 157, 199, 336, 368
NlaIII CATG 1 cut(s) 103
NlaIV GGNNCC 4 cut(s) 124, 184, 256, 338
NspV TTCGAA 1 cut(s) 380
PfeI GAWTC 2 cut(s) 53, 218
PflMI CCANNNNNTGG 1 cut(s) 264
PkrI GCNGC 1 cut(s) 140
PluTI GGCGCC 1 cut(s) 126
Psp124BI GAGCTC 1 cut(s) 66
PspN4I GGNNCC 4 cut(s) 124, 184, 256, 338
PspPI GGNCC 1 cut(s) 183
PsuI RGATCY 2 cut(s) 336, 368
SacI GAGCTC 1 cut(s) 66
SatI GCNGC 1 cut(s) 139
Sau3AI GATC 5 cut(s) 16, 157, 199, 336, 368
Sau96I GGNCC 1 cut(s) 183
SduI GDGCHC 1 cut(s) 66
SetI ASST 3 cut(s) 66, 112, 292
SfoI GGCGCC 1 cut(s) 124
SfuI TTCGAA 1 cut(s) 380
Sse9I AATT 1 cut(s) 301
SsiI CCGC 1 cut(s) 243
SspDI GGCGCC 1 cut(s) 122
SstI GAGCTC 1 cut(s) 66
TaaI ACNGT 3 cut(s) 153, 193, 237
TaqI TCGA 4 cut(s) 145, 221, 297, 380
TasI AATT 1 cut(s) 301
TfiI GAWTC 2 cut(s) 53, 218
TseI GCWGC 1 cut(s) 138
TspDTI ATGAA 1 cut(s) 88
Van91I CCANNNNNTGG 1 cut(s) 264
XmiI GTMKAC 1 cut(s) 22
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.