Rw1G024910

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0014270
Physical Location & Seq
Forward (+)
51337517 .. 51337777
261 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G024910.1

Sequence Viewer

Length: 261 bp
ATGCAGGAAACAGTGGAAGGAAAAGGAGATCATGACGCGGCATTGGCTATATGGGAGTGTGGCAGCCCCTTGTATGACTCATATGAACTGGCATCGATTAGTCATCTAATCGAGCGCCATCTGATGGCATTCCCATCTCTTGGAGGATCATCGAAGCGGTTCATAGCCAAGTTCTCTCATTCTTCTTCATCGAAGACGACCTCCACTACTAGTACTACAATGAAGGAGGCAAAAGGTCTAATTCAATGGAGGAAAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

86

Amino Acids

9.46

Weight (kDa)

7.93

Isoelectric Point (pI)

50.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014270)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G61660 AT3G61660
fragaria_vesca FvH4_5g04090 FvH4_7g16050
malus_domestica MD07G1146000.v1.1
prunus_persica Prupe.2G184300_v2.0.a1 Prupe.5G115500_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0358991 RchiOBHm_Chr7g0195411
rosa_multiflora Rmu_sc0004044.1_g000004
rosa_roxburghii Rroxscaffold_4G00297480
rosa_rugosa Rorug01G0266900
rosa_samantha Rh1AG280200 Rh1BG247200 Rh1CG264600 Rh1DG275500
rosa_wichuraiana Rw1G024910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 124, 140
AccII CGCG 1 cut(s) 38
AciI CCGC 2 cut(s) 38, 157
AclWI GGATC 1 cut(s) 154
AfaI GTAC 1 cut(s) 214
AfiI CCNNNNNNNGG 2 cut(s) 124, 140
AgsI TTSAA 1 cut(s) 245
AhlI ACTAGT 1 cut(s) 209
AlwI GGATC 1 cut(s) 154
ApeKI GCWGC 1 cut(s) 63
Asp700I GAANNNNTTC 1 cut(s) 158
AspLEI GCGC 1 cut(s) 117
BbsI GAAGAC 1 cut(s) 200
BbvI GCAGC 1 cut(s) 75
BccI CCATC 3 cut(s) 118, 126, 142
BcuI ACTAGT 1 cut(s) 209
BfaI CTAG 1 cut(s) 210
BfoI RGCGCY 1 cut(s) 118
BisI GCNGC 2 cut(s) 39, 64
BlsI GCNGC 2 cut(s) 40, 65
BmcAI AGTACT 1 cut(s) 214
BmsI GCATC 1 cut(s) 101
BpiI GAAGAC 1 cut(s) 200
Bsa29I ATCGAT 1 cut(s) 95
Bsc4I CCNNNNNNNGG 2 cut(s) 124, 140
Bse1I ACTGG 1 cut(s) 93
BseCI ATCGAT 1 cut(s) 95
BseLI CCNNNNNNNGG 2 cut(s) 124, 140
BseNI ACTGG 1 cut(s) 93
BseXI GCAGC 1 cut(s) 75
Bsh1236I CGCG 1 cut(s) 38
BshVI ATCGAT 1 cut(s) 95
BslI CCNNNNNNNGG 2 cut(s) 124, 140
BsmI GAATGC 1 cut(s) 128
Bsp143I GATC 2 cut(s) 28, 146
BspACI CCGC 2 cut(s) 38, 157
BspDI ATCGAT 1 cut(s) 95
BspFNI CGCG 1 cut(s) 38
BspHI TCATGA 1 cut(s) 31
BspPI GGATC 1 cut(s) 154
BsrI ACTGG 1 cut(s) 93
BssMI GATC 2 cut(s) 28, 146
Bst4CI ACNGT 1 cut(s) 13
BstFNI CGCG 1 cut(s) 38
BstH2I RGCGCY 1 cut(s) 118
BstHHI GCGC 1 cut(s) 117
BstKTI GATC 2 cut(s) 31, 149
BstMBI GATC 2 cut(s) 28, 146
BstMWI GCNNNNNNNGC 1 cut(s) 44
BstUI CGCG 1 cut(s) 38
BstV1I GCAGC 1 cut(s) 75
BstV2I GAAGAC 1 cut(s) 200
Bsu15I ATCGAT 1 cut(s) 95
BsuTUI ATCGAT 1 cut(s) 95
BtsIMutI CAGTG 1 cut(s) 18
CciI TCATGA 1 cut(s) 31
CfoI GCGC 1 cut(s) 117
ClaI ATCGAT 1 cut(s) 95
CseI GACGC 1 cut(s) 44
Csp6I GTAC 1 cut(s) 213
CviAII CATG 1 cut(s) 32
CviJI RGCY 3 cut(s) 47, 66, 167
CviKI_1 RGCY 3 cut(s) 47, 66, 167
CviQI GTAC 1 cut(s) 213
DpnI GATC 2 cut(s) 30, 148
DpnII GATC 2 cut(s) 28, 146
FaeI CATG 1 cut(s) 35
FaiI YATR 7 cut(s) 33, 50, 52, 75, 82, 84, 164
FatI CATG 1 cut(s) 31
FauNDI CATATG 1 cut(s) 82
Fnu4HI GCNGC 2 cut(s) 39, 64
Fsp4HI GCNGC 2 cut(s) 39, 64
FspBI CTAG 1 cut(s) 210
GlaI GCGC 1 cut(s) 116
GluI GCNGC 2 cut(s) 39, 64
HaeII RGCGCY 1 cut(s) 118
HgaI GACGC 1 cut(s) 44
HhaI GCGC 1 cut(s) 117
Hin1II CATG 1 cut(s) 35
Hin6I GCGC 1 cut(s) 115
HinP1I GCGC 1 cut(s) 115
HinfI GANTC 1 cut(s) 77
Hpy188I TCNGA 1 cut(s) 123
Hpy188III TCNNGA 1 cut(s) 32
HpyAV CCTTC 2 cut(s) 11, 217
HpyCH4III ACNGT 1 cut(s) 13
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 1 cut(s) 44
Hsp92II CATG 1 cut(s) 35
HspAI GCGC 1 cut(s) 115
Kzo9I GATC 2 cut(s) 28, 146
LpnPI CCDG 1 cut(s) 74
Lsp1109I GCAGC 1 cut(s) 75
LweI GCATC 1 cut(s) 101
MaeI CTAG 1 cut(s) 210
MalI GATC 2 cut(s) 30, 148
MboI GATC 2 cut(s) 28, 146
MboII GAAGA 3 cut(s) 174, 177, 205
MluCI AATT 1 cut(s) 240
MlyI GAGTC 1 cut(s) 71
MnlI CCTC 4 cut(s) 137, 211, 220, 243
MroXI GAANNNNTTC 1 cut(s) 158
Mva1269I GAATGC 1 cut(s) 128
MvnI CGCG 1 cut(s) 38
MwoI GCNNNNNNNGC 1 cut(s) 44
NdeI CATATG 1 cut(s) 82
NdeII GATC 2 cut(s) 28, 146
NlaIII CATG 1 cut(s) 35
PagI TCATGA 1 cut(s) 31
PctI GAATGC 1 cut(s) 128
PdmI GAANNNNTTC 1 cut(s) 158
PflMI CCANNNNNTGG 2 cut(s) 124, 140
PkrI GCNGC 2 cut(s) 40, 65
PleI GAGTC 1 cut(s) 71
PpsI GAGTC 1 cut(s) 71
RsaI GTAC 1 cut(s) 214
RsaNI GTAC 1 cut(s) 213
SatI GCNGC 2 cut(s) 39, 64
Sau3AI GATC 2 cut(s) 28, 146
ScaI AGTACT 1 cut(s) 214
SchI GAGTC 1 cut(s) 71
SetI ASST 2 cut(s) 203, 238
SfaNI GCATC 1 cut(s) 101
SgeI CNNG 9 cut(s) 17, 44, 49, 82, 101, 124, 152, 181, 222
SpeI ACTAGT 1 cut(s) 209
Sse9I AATT 1 cut(s) 240
SsiI CCGC 2 cut(s) 38, 157
SspMI CTAG 1 cut(s) 210
TaaI ACNGT 1 cut(s) 13
TaqI TCGA 4 cut(s) 95, 111, 152, 191
TasI AATT 1 cut(s) 240
TatI WGTACW 1 cut(s) 212
TauI GCSGC 1 cut(s) 41
TscAI CASTG 1 cut(s) 18
TseI GCWGC 1 cut(s) 63
TspDTI ATGAA 4 cut(s) 99, 151, 177, 236
TspRI CASTG 1 cut(s) 18
Van91I CCANNNNNTGG 2 cut(s) 124, 140
XmnI GAANNNNTTC 1 cut(s) 158
XspI CTAG 1 cut(s) 210
ZrmI AGTACT 1 cut(s) 214
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.