Rh1BG247200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0014270
Physical Location & Seq
Forward (+)
37442727 .. 37443356
630 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG247200.1

Sequence Viewer

Length: 417 bp
ATGCAAATGCAGGAAACAGTGGAAGGAAAAGGAGATGCGGCCGCGGCATTGGCTATATGGGACTGTGGCAGCCCCTTGTATGACTCGTATGAACTGGCATCGGTTAGTCATCTAATCGAGCGCCATCTGATGGCATTCCCATCTCTTGGAGGATCATCGAAGCGGTTCATAGCCAAGTTCTCTCATTCTTCTTCATCGAAGACGACCTCCACTACTAGTACTAGTACTACAATGAAGGAGGCAAAAGGGTCTAATTCAATGGAGGAAAACTTGAGGAAGATCTTGGGGATCAAGAAGATGTGGAAGAGGAAGGGTTTGTTTGGAGCAACGAAAGAAAAGACCAAGAAAATGAAGACTACTGGATTTTCTGGCTTTTACAGTAGGTTTGGTCTCTGGAGGAAGAAGGAATGCAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

138

Amino Acids

15.38

Weight (kDa)

9.97

Isoelectric Point (pI)

48.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014270)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G61660 AT3G61660
fragaria_vesca FvH4_5g04090 FvH4_7g16050
malus_domestica MD07G1146000.v1.1
prunus_persica Prupe.2G184300_v2.0.a1 Prupe.5G115500_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0358991 RchiOBHm_Chr7g0195411
rosa_multiflora Rmu_sc0004044.1_g000004
rosa_roxburghii Rroxscaffold_4G00297480
rosa_rugosa Rorug01G0266900
rosa_samantha Rh1AG280200 Rh1BG247200 Rh1CG264600 Rh1DG275500
rosa_wichuraiana Rw1G024910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 402
Acc36I ACCTGC 1 cut(s) 402
AccB7I CCANNNNNTGG 2 cut(s) 130, 146
AccII CGCG 1 cut(s) 44
AciI CCGC 4 cut(s) 38, 42, 44, 163
AclWI GGATC 2 cut(s) 160, 296
AcoI YGGCCR 1 cut(s) 39
AfaI GTAC 2 cut(s) 220, 226
AfiI CCNNNNNNNGG 2 cut(s) 130, 146
AgsI TTSAA 1 cut(s) 258
AhlI ACTAGT 2 cut(s) 215, 221
Alw26I GTCTC 1 cut(s) 395
AlwI GGATC 2 cut(s) 160, 296
AoxI GGCC 1 cut(s) 39
ApeKI GCWGC 1 cut(s) 69
Asp700I GAANNNNTTC 1 cut(s) 164
AspLEI GCGC 1 cut(s) 123
BbsI GAAGAC 2 cut(s) 206, 359
BbvI GCAGC 1 cut(s) 81
BccI CCATC 3 cut(s) 124, 132, 148
BcoDI GTCTC 1 cut(s) 395
BcuI ACTAGT 2 cut(s) 215, 221
BfaI CTAG 2 cut(s) 216, 222
BfoI RGCGCY 1 cut(s) 124
BfuAI ACCTGC 1 cut(s) 402
BglII AGATCT 1 cut(s) 279
BisI GCNGC 4 cut(s) 39, 42, 45, 70
BlsI GCNGC 4 cut(s) 40, 43, 46, 71
BmcAI AGTACT 2 cut(s) 220, 226
BmsI GCATC 2 cut(s) 25, 107
BpiI GAAGAC 2 cut(s) 206, 359
BpmI CTGGAG 1 cut(s) 415
BpuEI CTTGAG 1 cut(s) 292
BsaI GGTCTC 1 cut(s) 395
BsaJI CCNNGG 1 cut(s) 42
Bsc4I CCNNNNNNNGG 2 cut(s) 130, 146
Bse1I ACTGG 2 cut(s) 99, 364
BseDI CCNNGG 1 cut(s) 42
BseLI CCNNNNNNNGG 2 cut(s) 130, 146
BseNI ACTGG 2 cut(s) 99, 364
BseX3I CGGCCG 1 cut(s) 39
BseXI GCAGC 1 cut(s) 81
Bsh1236I CGCG 1 cut(s) 44
Bsh1285I CGRYCG 1 cut(s) 42
BshFI GGCC 1 cut(s) 41
BsiEI CGRYCG 1 cut(s) 42
BslFI GGGAC 1 cut(s) 74
BslI CCNNNNNNNGG 2 cut(s) 130, 146
BsmAI GTCTC 1 cut(s) 395
BsmFI GGGAC 1 cut(s) 74
BsmI GAATGC 2 cut(s) 134, 413
BsnI GGCC 1 cut(s) 41
Bso31I GGTCTC 1 cut(s) 395
Bsp143I GATC 3 cut(s) 152, 279, 288
BspACI CCGC 4 cut(s) 38, 42, 44, 163
BspANI GGCC 1 cut(s) 41
BspFNI CGCG 1 cut(s) 44
BspMI ACCTGC 1 cut(s) 402
BspPI GGATC 2 cut(s) 160, 296
BspTNI GGTCTC 1 cut(s) 395
BsrI ACTGG 2 cut(s) 99, 364
BssECI CCNNGG 1 cut(s) 42
BssMI GATC 3 cut(s) 152, 279, 288
Bst4CI ACNGT 3 cut(s) 19, 65, 380
Bst6I CTCTTC 1 cut(s) 299
BstDSI CCRYGG 1 cut(s) 42
BstFNI CGCG 1 cut(s) 44
BstH2I RGCGCY 1 cut(s) 124
BstHHI GCGC 1 cut(s) 123
BstKTI GATC 3 cut(s) 155, 282, 291
BstMAI GTCTC 1 cut(s) 395
BstMBI GATC 3 cut(s) 152, 279, 288
BstMCI CGRYCG 1 cut(s) 42
BstMWI GCNNNNNNNGC 2 cut(s) 44, 50
BstUI CGCG 1 cut(s) 44
BstV1I GCAGC 1 cut(s) 81
BstV2I GAAGAC 2 cut(s) 206, 359
BstX2I RGATCY 1 cut(s) 279
BstYI RGATCY 1 cut(s) 279
BstZI CGGCCG 1 cut(s) 39
BsuRI GGCC 1 cut(s) 41
BtgI CCRYGG 1 cut(s) 42
BtsIMutI CAGTG 1 cut(s) 24
BveI ACCTGC 1 cut(s) 402
CciNI GCGGCCGC 1 cut(s) 39
CfoI GCGC 1 cut(s) 123
Cfr42I CCGCGG 1 cut(s) 45
Csp6I GTAC 2 cut(s) 219, 225
CviJI RGCY 5 cut(s) 41, 53, 72, 173, 372
CviKI_1 RGCY 5 cut(s) 41, 53, 72, 173, 372
CviQI GTAC 2 cut(s) 219, 225
DpnI GATC 3 cut(s) 154, 281, 290
DpnII GATC 3 cut(s) 152, 279, 288
EaeI YGGCCR 1 cut(s) 39
EagI CGGCCG 1 cut(s) 39
Eam1104I CTCTTC 1 cut(s) 299
EarI CTCTTC 1 cut(s) 299
EclXI CGGCCG 1 cut(s) 39
Eco31I GGTCTC 1 cut(s) 395
Eco52I CGGCCG 1 cut(s) 39
FaiI YATR 5 cut(s) 56, 58, 81, 90, 170
FaqI GGGAC 1 cut(s) 74
Fnu4HI GCNGC 4 cut(s) 39, 42, 45, 70
Fsp4HI GCNGC 4 cut(s) 39, 42, 45, 70
FspBI CTAG 2 cut(s) 216, 222
GlaI GCGC 1 cut(s) 122
GluI GCNGC 4 cut(s) 39, 42, 45, 70
GsuI CTGGAG 1 cut(s) 415
HaeII RGCGCY 1 cut(s) 124
HaeIII GGCC 1 cut(s) 41
HhaI GCGC 1 cut(s) 123
Hin6I GCGC 1 cut(s) 121
HinP1I GCGC 1 cut(s) 121
HinfI GANTC 1 cut(s) 83
Hpy188I TCNGA 1 cut(s) 129
Hpy188III TCNNGA 2 cut(s) 292, 394
HpyAV CCTTC 4 cut(s) 17, 229, 304, 397
HpyCH4III ACNGT 3 cut(s) 19, 65, 380
HpyCH4V TGCA 3 cut(s) 4, 10, 411
HpyF10VI GCNNNNNNNGC 2 cut(s) 44, 50
HspAI GCGC 1 cut(s) 121
KspI CCGCGG 1 cut(s) 45
Kzo9I GATC 3 cut(s) 152, 279, 288
LmnI GCTCC 1 cut(s) 323
LpnPI CCDG 5 cut(s) 80, 345, 354, 379, 397
Lsp1109I GCAGC 1 cut(s) 81
LweI GCATC 2 cut(s) 25, 107
MaeI CTAG 2 cut(s) 216, 222
MalI GATC 3 cut(s) 154, 281, 290
MboI GATC 3 cut(s) 152, 279, 288
MboII GAAGA 8 cut(s) 180, 183, 211, 289, 307, 316, 364, 412
MflI RGATCY 1 cut(s) 279
MluCI AATT 1 cut(s) 253
MlyI GAGTC 1 cut(s) 77
MnlI CCTC 7 cut(s) 143, 217, 232, 256, 267, 300, 390
MroXI GAANNNNTTC 1 cut(s) 164
MspA1I CMGCKG 1 cut(s) 44
Mva1269I GAATGC 2 cut(s) 134, 413
MvnI CGCG 1 cut(s) 44
MwoI GCNNNNNNNGC 2 cut(s) 44, 50
NdeII GATC 3 cut(s) 152, 279, 288
NotI GCGGCCGC 1 cut(s) 39
PaqCI CACCTGC 1 cut(s) 402
PctI GAATGC 2 cut(s) 134, 413
PdmI GAANNNNTTC 1 cut(s) 164
PflMI CCANNNNNTGG 2 cut(s) 130, 146
PkrI GCNGC 4 cut(s) 40, 43, 46, 71
PleI GAGTC 1 cut(s) 77
PpsI GAGTC 1 cut(s) 77
PsuI RGATCY 1 cut(s) 279
RsaI GTAC 2 cut(s) 220, 226
RsaNI GTAC 2 cut(s) 219, 225
SacII CCGCGG 1 cut(s) 45
SatI GCNGC 4 cut(s) 39, 42, 45, 70
Sau3AI GATC 3 cut(s) 152, 279, 288
ScaI AGTACT 2 cut(s) 220, 226
SchI GAGTC 1 cut(s) 77
SetI ASST 3 cut(s) 209, 386, 416
SfaNI GCATC 2 cut(s) 25, 107
Sfr303I CCGCGG 1 cut(s) 45
SgrBI CCGCGG 1 cut(s) 45
SmlI CTYRAG 1 cut(s) 271
SmoI CTYRAG 1 cut(s) 271
SpeI ACTAGT 2 cut(s) 215, 221
Sse9I AATT 1 cut(s) 253
SsiI CCGC 4 cut(s) 38, 42, 44, 163
SspMI CTAG 2 cut(s) 216, 222
TaaI ACNGT 3 cut(s) 19, 65, 380
TaqI TCGA 3 cut(s) 117, 158, 197
TasI AATT 1 cut(s) 253
TatI WGTACW 2 cut(s) 218, 224
TauI GCSGC 3 cut(s) 41, 44, 47
TscAI CASTG 1 cut(s) 24
TseI GCWGC 1 cut(s) 69
TspDTI ATGAA 5 cut(s) 105, 157, 183, 248, 365
TspRI CASTG 1 cut(s) 24
Van91I CCANNNNNTGG 2 cut(s) 130, 146
XmnI GAANNNNTTC 1 cut(s) 164
XspI CTAG 2 cut(s) 216, 222
ZrmI AGTACT 2 cut(s) 220, 226
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.