Rmu_sc0004044.1_g000004

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004044.1
OG0014270
Physical Location & Seq
Forward (+)
35036 .. 35440
405 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004044.1_g000004.1.cds

Sequence Viewer

Length: 405 bp
atgcaggaaacagtggaaggaaaaggagatcatgacgcggcattggctatatgggactgtggcagccccttgtatgactcatatgaactggcatcggttagtcatctaatcgagcgccatctgatggcattcccatctcttggaggatcatcgaagcggttcatagccaagttctctcattcttcttcatcgaagacgacctccactactagtactacaatgaaggaggcaaaatggtctaattcaatggaggaaaacttgagcaagatcttggggatcaagaagatgtggaagaggaagggtttgtttggagcaacgaaagaaaagaccaagaaaatgaagactactggattttctggcttttccagtaggtttggtctctggaggaagaaggaatgcaggtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

134

Amino Acids

15.02

Weight (kDa)

9.84

Isoelectric Point (pI)

48.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014270)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G61660 AT3G61660
fragaria_vesca FvH4_5g04090 FvH4_7g16050
malus_domestica MD07G1146000.v1.1
prunus_persica Prupe.2G184300_v2.0.a1 Prupe.5G115500_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0358991 RchiOBHm_Chr7g0195411
rosa_multiflora Rmu_sc0004044.1_g000004
rosa_roxburghii Rroxscaffold_4G00297480
rosa_rugosa Rorug01G0266900
rosa_samantha Rh1AG280200 Rh1BG247200 Rh1CG264600 Rh1DG275500
rosa_wichuraiana Rw1G024910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 390
Acc36I ACCTGC 1 cut(s) 390
AccB7I CCANNNNNTGG 2 cut(s) 124, 140
AccII CGCG 1 cut(s) 38
AciI CCGC 2 cut(s) 38, 157
AclWI GGATC 2 cut(s) 154, 284
AfaI GTAC 1 cut(s) 214
AfiI CCNNNNNNNGG 2 cut(s) 124, 140
AgsI TTSAA 1 cut(s) 246
AhlI ACTAGT 1 cut(s) 209
Alw26I GTCTC 1 cut(s) 383
AlwI GGATC 2 cut(s) 154, 284
ApeKI GCWGC 1 cut(s) 63
Asp700I GAANNNNTTC 1 cut(s) 158
AspLEI GCGC 1 cut(s) 117
BbsI GAAGAC 2 cut(s) 200, 347
BbvI GCAGC 1 cut(s) 75
BccI CCATC 3 cut(s) 118, 126, 142
BcoDI GTCTC 1 cut(s) 383
BcuI ACTAGT 1 cut(s) 209
BfaI CTAG 1 cut(s) 210
BfoI RGCGCY 1 cut(s) 118
BfuAI ACCTGC 1 cut(s) 390
BglII AGATCT 1 cut(s) 267
BisI GCNGC 2 cut(s) 39, 64
BlsI GCNGC 2 cut(s) 40, 65
BmcAI AGTACT 1 cut(s) 214
BmsI GCATC 1 cut(s) 101
BpiI GAAGAC 2 cut(s) 200, 347
BpmI CTGGAG 1 cut(s) 403
BpuEI CTTGAG 1 cut(s) 280
BsaI GGTCTC 1 cut(s) 383
Bsc4I CCNNNNNNNGG 2 cut(s) 124, 140
Bse1I ACTGG 3 cut(s) 93, 352, 366
BseLI CCNNNNNNNGG 2 cut(s) 124, 140
BseNI ACTGG 3 cut(s) 93, 352, 366
BseXI GCAGC 1 cut(s) 75
Bsh1236I CGCG 1 cut(s) 38
BslFI GGGAC 1 cut(s) 68
BslI CCNNNNNNNGG 2 cut(s) 124, 140
BsmAI GTCTC 1 cut(s) 383
BsmFI GGGAC 1 cut(s) 68
BsmI GAATGC 2 cut(s) 128, 401
Bso31I GGTCTC 1 cut(s) 383
Bsp143I GATC 4 cut(s) 28, 146, 267, 276
BspACI CCGC 2 cut(s) 38, 157
BspFNI CGCG 1 cut(s) 38
BspHI TCATGA 1 cut(s) 31
BspMI ACCTGC 1 cut(s) 390
BspPI GGATC 2 cut(s) 154, 284
BspTNI GGTCTC 1 cut(s) 383
BsrI ACTGG 3 cut(s) 93, 352, 366
BssMI GATC 4 cut(s) 28, 146, 267, 276
Bst4CI ACNGT 2 cut(s) 13, 59
Bst6I CTCTTC 1 cut(s) 287
BstFNI CGCG 1 cut(s) 38
BstH2I RGCGCY 1 cut(s) 118
BstHHI GCGC 1 cut(s) 117
BstKTI GATC 4 cut(s) 31, 149, 270, 279
BstMAI GTCTC 1 cut(s) 383
BstMBI GATC 4 cut(s) 28, 146, 267, 276
BstMWI GCNNNNNNNGC 1 cut(s) 44
BstUI CGCG 1 cut(s) 38
BstV1I GCAGC 1 cut(s) 75
BstV2I GAAGAC 2 cut(s) 200, 347
BstX2I RGATCY 1 cut(s) 267
BstYI RGATCY 1 cut(s) 267
BtsIMutI CAGTG 1 cut(s) 18
BveI ACCTGC 1 cut(s) 390
CciI TCATGA 1 cut(s) 31
CfoI GCGC 1 cut(s) 117
CseI GACGC 1 cut(s) 44
Csp6I GTAC 1 cut(s) 213
CviAII CATG 1 cut(s) 32
CviJI RGCY 4 cut(s) 47, 66, 167, 360
CviKI_1 RGCY 4 cut(s) 47, 66, 167, 360
CviQI GTAC 1 cut(s) 213
DpnI GATC 4 cut(s) 30, 148, 269, 278
DpnII GATC 4 cut(s) 28, 146, 267, 276
Eam1104I CTCTTC 1 cut(s) 287
EarI CTCTTC 1 cut(s) 287
Eco31I GGTCTC 1 cut(s) 383
FaeI CATG 1 cut(s) 35
FaiI YATR 7 cut(s) 33, 50, 52, 75, 82, 84, 164
FaqI GGGAC 1 cut(s) 68
FatI CATG 1 cut(s) 31
FauNDI CATATG 1 cut(s) 82
Fnu4HI GCNGC 2 cut(s) 39, 64
Fsp4HI GCNGC 2 cut(s) 39, 64
FspBI CTAG 1 cut(s) 210
GlaI GCGC 1 cut(s) 116
GluI GCNGC 2 cut(s) 39, 64
GsuI CTGGAG 1 cut(s) 403
HaeII RGCGCY 1 cut(s) 118
HgaI GACGC 1 cut(s) 44
HhaI GCGC 1 cut(s) 117
Hin1II CATG 1 cut(s) 35
Hin6I GCGC 1 cut(s) 115
HinP1I GCGC 1 cut(s) 115
HinfI GANTC 1 cut(s) 77
Hpy188I TCNGA 1 cut(s) 123
Hpy188III TCNNGA 3 cut(s) 32, 280, 382
HpyAV CCTTC 4 cut(s) 11, 217, 292, 385
HpyCH4III ACNGT 2 cut(s) 13, 59
HpyCH4V TGCA 2 cut(s) 4, 399
HpyF10VI GCNNNNNNNGC 1 cut(s) 44
Hsp92II CATG 1 cut(s) 35
HspAI GCGC 1 cut(s) 115
Kzo9I GATC 4 cut(s) 28, 146, 267, 276
LmnI GCTCC 1 cut(s) 311
LpnPI CCDG 6 cut(s) 74, 333, 342, 367, 379, 385
Lsp1109I GCAGC 1 cut(s) 75
LweI GCATC 1 cut(s) 101
MaeI CTAG 1 cut(s) 210
MalI GATC 4 cut(s) 30, 148, 269, 278
MboI GATC 4 cut(s) 28, 146, 267, 276
MboII GAAGA 7 cut(s) 174, 177, 205, 295, 304, 352, 400
MflI RGATCY 1 cut(s) 267
MluCI AATT 1 cut(s) 241
MlyI GAGTC 1 cut(s) 71
MnlI CCTC 6 cut(s) 137, 211, 220, 244, 288, 378
MroXI GAANNNNTTC 1 cut(s) 158
Mva1269I GAATGC 2 cut(s) 128, 401
MvnI CGCG 1 cut(s) 38
MwoI GCNNNNNNNGC 1 cut(s) 44
NdeI CATATG 1 cut(s) 82
NdeII GATC 4 cut(s) 28, 146, 267, 276
NlaIII CATG 1 cut(s) 35
PagI TCATGA 1 cut(s) 31
PaqCI CACCTGC 1 cut(s) 390
PctI GAATGC 2 cut(s) 128, 401
PdmI GAANNNNTTC 1 cut(s) 158
PflMI CCANNNNNTGG 2 cut(s) 124, 140
PkrI GCNGC 2 cut(s) 40, 65
PleI GAGTC 1 cut(s) 71
PpsI GAGTC 1 cut(s) 71
PsuI RGATCY 1 cut(s) 267
RsaI GTAC 1 cut(s) 214
RsaNI GTAC 1 cut(s) 213
SatI GCNGC 2 cut(s) 39, 64
Sau3AI GATC 4 cut(s) 28, 146, 267, 276
ScaI AGTACT 1 cut(s) 214
SchI GAGTC 1 cut(s) 71
SetI ASST 3 cut(s) 203, 374, 404
SfaNI GCATC 1 cut(s) 101
SmlI CTYRAG 1 cut(s) 259
SmoI CTYRAG 1 cut(s) 259
SpeI ACTAGT 1 cut(s) 209
Sse9I AATT 1 cut(s) 241
SsiI CCGC 2 cut(s) 38, 157
SspMI CTAG 1 cut(s) 210
TaaI ACNGT 2 cut(s) 13, 59
TaqI TCGA 3 cut(s) 111, 152, 191
TasI AATT 1 cut(s) 241
TatI WGTACW 1 cut(s) 212
TauI GCSGC 1 cut(s) 41
TscAI CASTG 1 cut(s) 18
TseI GCWGC 1 cut(s) 63
TspDTI ATGAA 5 cut(s) 99, 151, 177, 236, 353
TspRI CASTG 1 cut(s) 18
Van91I CCANNNNNTGG 2 cut(s) 124, 140
XmnI GAANNNNTTC 1 cut(s) 158
XspI CTAG 1 cut(s) 210
ZrmI AGTACT 1 cut(s) 214
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.