Rroxscaffold_4G00297480

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0014270
Physical Location & Seq
Reverse (-)
17380870 .. 17381430
561 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00297480.1

Sequence Viewer

Length: 456 bp
ATGAATGGTGTGTTAGTCTATGATCTTCGATCATTTCAAATGCAAATGCAGGAAACAGTGGAAGGAAAAGGAGATCATGAAGCGGCATTGGCTATATGGGACTGTGGCAGCCCCTTGTATGACTCGTATGAACTGGCATCGGTTAGTCATCTAATCGAGCGCCATCTGATGGCATTCCCATCTCTTGGAGGATCATCGAATCGGTTCATAGCCAAGTTCTCTCATTCTTCTTCATCGAAGACGACCTCCACTATTAGTACTAGTACTACAATGAAGGAGGCAAAAGGGTCTAATTCAATGGAAGAAAACTTGAGCAAGATCTTGGGGATCAAGAAGATGTGGAAGAGGAAGGGTTTGTTTGGAGCAACGAAAGAAAAGACCAAGAAAATGAAGACTACTGGATTTTCTGGCTTTTACAGTAGGTTTGGTCTCTGGAGGAAGAAGGAATGCAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

151

Amino Acids

16.95

Weight (kDa)

9.73

Isoelectric Point (pI)

45.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014270)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G61660 AT3G61660
fragaria_vesca FvH4_5g04090 FvH4_7g16050
malus_domestica MD07G1146000.v1.1
prunus_persica Prupe.2G184300_v2.0.a1 Prupe.5G115500_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0358991 RchiOBHm_Chr7g0195411
rosa_multiflora Rmu_sc0004044.1_g000004
rosa_roxburghii Rroxscaffold_4G00297480
rosa_rugosa Rorug01G0266900
rosa_samantha Rh1AG280200 Rh1BG247200 Rh1CG264600 Rh1DG275500
rosa_wichuraiana Rw1G024910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 441
Acc36I ACCTGC 1 cut(s) 441
AccB7I CCANNNNNTGG 2 cut(s) 169, 185
AciI CCGC 1 cut(s) 83
AclWI GGATC 2 cut(s) 199, 335
AfaI GTAC 2 cut(s) 259, 265
AfiI CCNNNNNNNGG 2 cut(s) 169, 185
AgsI TTSAA 2 cut(s) 38, 297
AhlI ACTAGT 1 cut(s) 260
Alw26I GTCTC 1 cut(s) 434
AlwI GGATC 2 cut(s) 199, 335
ApeKI GCWGC 1 cut(s) 108
Asp700I GAANNNNTTC 1 cut(s) 203
AspLEI GCGC 1 cut(s) 162
BbsI GAAGAC 2 cut(s) 245, 398
BbvI GCAGC 1 cut(s) 120
BccI CCATC 3 cut(s) 163, 171, 187
BcoDI GTCTC 1 cut(s) 434
BcuI ACTAGT 1 cut(s) 260
BfaI CTAG 1 cut(s) 261
BfoI RGCGCY 1 cut(s) 163
BfuAI ACCTGC 1 cut(s) 441
BglII AGATCT 1 cut(s) 318
BisI GCNGC 2 cut(s) 84, 109
BlsI GCNGC 2 cut(s) 85, 110
BmcAI AGTACT 2 cut(s) 259, 265
BmsI GCATC 1 cut(s) 146
BpiI GAAGAC 2 cut(s) 245, 398
BpmI CTGGAG 1 cut(s) 454
BpuEI CTTGAG 1 cut(s) 331
BsaI GGTCTC 1 cut(s) 434
Bsc4I CCNNNNNNNGG 2 cut(s) 169, 185
Bse1I ACTGG 2 cut(s) 138, 403
BseLI CCNNNNNNNGG 2 cut(s) 169, 185
BseNI ACTGG 2 cut(s) 138, 403
BseXI GCAGC 1 cut(s) 120
BslFI GGGAC 1 cut(s) 113
BslI CCNNNNNNNGG 2 cut(s) 169, 185
BsmAI GTCTC 1 cut(s) 434
BsmFI GGGAC 1 cut(s) 113
BsmI GAATGC 2 cut(s) 173, 452
Bso31I GGTCTC 1 cut(s) 434
Bsp143I GATC 6 cut(s) 22, 29, 73, 191, 318, 327
BspACI CCGC 1 cut(s) 83
BspHI TCATGA 1 cut(s) 76
BspMI ACCTGC 1 cut(s) 441
BspPI GGATC 2 cut(s) 199, 335
BspTNI GGTCTC 1 cut(s) 434
BsrI ACTGG 2 cut(s) 138, 403
BssMI GATC 6 cut(s) 22, 29, 73, 191, 318, 327
Bst4CI ACNGT 3 cut(s) 58, 104, 419
Bst6I CTCTTC 1 cut(s) 338
BstH2I RGCGCY 1 cut(s) 163
BstHHI GCGC 1 cut(s) 162
BstKTI GATC 6 cut(s) 25, 32, 76, 194, 321, 330
BstMAI GTCTC 1 cut(s) 434
BstMBI GATC 6 cut(s) 22, 29, 73, 191, 318, 327
BstMWI GCNNNNNNNGC 1 cut(s) 89
BstV1I GCAGC 1 cut(s) 120
BstV2I GAAGAC 2 cut(s) 245, 398
BstX2I RGATCY 1 cut(s) 318
BstYI RGATCY 1 cut(s) 318
BtsIMutI CAGTG 1 cut(s) 63
BveI ACCTGC 1 cut(s) 441
CciI TCATGA 1 cut(s) 76
CfoI GCGC 1 cut(s) 162
Csp6I GTAC 2 cut(s) 258, 264
CviAII CATG 1 cut(s) 77
CviJI RGCY 4 cut(s) 92, 111, 212, 411
CviKI_1 RGCY 4 cut(s) 92, 111, 212, 411
CviQI GTAC 2 cut(s) 258, 264
DpnI GATC 6 cut(s) 24, 31, 75, 193, 320, 329
DpnII GATC 6 cut(s) 22, 29, 73, 191, 318, 327
Eam1104I CTCTTC 1 cut(s) 338
EarI CTCTTC 1 cut(s) 338
Eco31I GGTCTC 1 cut(s) 434
FaeI CATG 1 cut(s) 80
FaiI YATR 7 cut(s) 21, 78, 95, 97, 120, 129, 209
FaqI GGGAC 1 cut(s) 113
FatI CATG 1 cut(s) 76
Fnu4HI GCNGC 2 cut(s) 84, 109
Fsp4HI GCNGC 2 cut(s) 84, 109
FspBI CTAG 1 cut(s) 261
GlaI GCGC 1 cut(s) 161
GluI GCNGC 2 cut(s) 84, 109
GsuI CTGGAG 1 cut(s) 454
HaeII RGCGCY 1 cut(s) 163
HhaI GCGC 1 cut(s) 162
Hin1II CATG 1 cut(s) 80
Hin6I GCGC 1 cut(s) 160
HinP1I GCGC 1 cut(s) 160
HinfI GANTC 2 cut(s) 122, 199
Hpy188I TCNGA 1 cut(s) 168
Hpy188III TCNNGA 3 cut(s) 77, 331, 433
HpyAV CCTTC 4 cut(s) 56, 268, 343, 436
HpyCH4III ACNGT 3 cut(s) 58, 104, 419
HpyCH4V TGCA 3 cut(s) 43, 49, 450
HpyF10VI GCNNNNNNNGC 1 cut(s) 89
Hsp92II CATG 1 cut(s) 80
HspAI GCGC 1 cut(s) 160
Kzo9I GATC 6 cut(s) 22, 29, 73, 191, 318, 327
LmnI GCTCC 1 cut(s) 362
LpnPI CCDG 6 cut(s) 35, 119, 384, 393, 418, 436
Lsp1109I GCAGC 1 cut(s) 120
LweI GCATC 1 cut(s) 146
MaeI CTAG 1 cut(s) 261
MalI GATC 6 cut(s) 24, 31, 75, 193, 320, 329
MboI GATC 6 cut(s) 22, 29, 73, 191, 318, 327
MboII GAAGA 9 cut(s) 17, 219, 222, 250, 314, 346, 355, 403, 451
MflI RGATCY 1 cut(s) 318
MluCI AATT 1 cut(s) 292
MlyI GAGTC 1 cut(s) 116
MnlI CCTC 5 cut(s) 182, 256, 271, 339, 429
MroXI GAANNNNTTC 1 cut(s) 203
Mva1269I GAATGC 2 cut(s) 173, 452
MwoI GCNNNNNNNGC 1 cut(s) 89
NdeII GATC 6 cut(s) 22, 29, 73, 191, 318, 327
NlaIII CATG 1 cut(s) 80
PagI TCATGA 1 cut(s) 76
PaqCI CACCTGC 1 cut(s) 441
PctI GAATGC 2 cut(s) 173, 452
PdmI GAANNNNTTC 1 cut(s) 203
PfeI GAWTC 1 cut(s) 199
PflMI CCANNNNNTGG 2 cut(s) 169, 185
PkrI GCNGC 2 cut(s) 85, 110
PleI GAGTC 1 cut(s) 116
PpsI GAGTC 1 cut(s) 116
PsuI RGATCY 1 cut(s) 318
RsaI GTAC 2 cut(s) 259, 265
RsaNI GTAC 2 cut(s) 258, 264
SatI GCNGC 2 cut(s) 84, 109
Sau3AI GATC 6 cut(s) 22, 29, 73, 191, 318, 327
ScaI AGTACT 2 cut(s) 259, 265
SchI GAGTC 1 cut(s) 116
SetI ASST 3 cut(s) 248, 425, 455
SfaNI GCATC 1 cut(s) 146
SmlI CTYRAG 1 cut(s) 310
SmoI CTYRAG 1 cut(s) 310
SpeI ACTAGT 1 cut(s) 260
Sse9I AATT 1 cut(s) 292
SsiI CCGC 1 cut(s) 83
SspMI CTAG 1 cut(s) 261
TaaI ACNGT 3 cut(s) 58, 104, 419
TaqI TCGA 4 cut(s) 28, 156, 197, 236
TasI AATT 1 cut(s) 292
TatI WGTACW 2 cut(s) 257, 263
TauI GCSGC 1 cut(s) 86
TfiI GAWTC 1 cut(s) 199
TscAI CASTG 1 cut(s) 63
TseI GCWGC 1 cut(s) 108
TspDTI ATGAA 7 cut(s) 17, 93, 144, 196, 222, 287, 404
TspRI CASTG 1 cut(s) 63
Van91I CCANNNNNTGG 2 cut(s) 169, 185
XmnI GAANNNNTTC 1 cut(s) 203
XspI CTAG 1 cut(s) 261
ZrmI AGTACT 2 cut(s) 259, 265
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.