Rorug01G0266900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0014270
Physical Location & Seq
Reverse (-)
37897357 .. 37898298
942 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0266900.1

Sequence Viewer

Length: 942 bp
ATGGTAGGTCGATTGCTTGGACCTAAATCCAAATTTTCGGGGTTCAAAGGCACTATTGCTACAATTTGGCGTAAGAAATCGGGGCTGTTGATTCAGGATATGGGTGATCGTTTTGTGTTTCAGTTTGATAGGGAGGCTGAGCGTAACAAGGTCTTGCATGGTGGTCCTTGGTTTTACAGGAATACAATGCTCGTGCTGGGTGGGTACAATGGGATAAGCCCGGTGGATGATGTCCCCCTGAATCTGGTGGAAACTTGGGTTGCCGTCAAGGCTCTACCAATAGGGCTACGTAACAAGGCGGTTCTAAACCTGGTGGGATCGACCCTGAGTAGGGTGATCCGTTTCGACCAGTCTGCGCTGCATAGGAGAGAAGAAAAGCAGAGGATTCATTTGGTGCTGGATGTCCGGCGAAGGATTAGGGTTTGGAAGCTCTTTGAGTTTTCATCGGTAGTAATGCCGGAGCTGTCTTTCACCTATGAAAAAGTAAGAGGCTTCTGTCGTAACTGTGGATTGTTTGAGCATGGAGAGACAGGCTGCGACGGGTTGTTGACGAGAGAGAAGGATGAAATCGTGGCTCAATTGCAGGCCTCTTCTTTGGCTGGACTCTCATTAAATGAGAAACTACCAAACCCTAGGGCTGAGGGGGAAGGAAACCAGGTTTTTAAGGATCTGCTTATGCTAGGGGACACAGGATCGAGTAGCAAGTTTGGGGAGCCGGTGGAGATGGAGTCTCCTCAGGTTCAACCTACGGGGAGTGGGGTTATCATGCATGCTGCATCTTTGTTTGCAGGTTTGGACCTCTCTGCTTTCCTAGAGAATTGGACGTCCCAAAACCATAAAACTATGGGATCCCAAAAAATGGGGTGTGGGCTACTCTGGTTGTGGTTCAGAAATCGAAGCTGGACGGTGGCAGTGTTACAATGGATCTGGAATCTTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

313

Amino Acids

35.26

Weight (kDa)

9.41

Isoelectric Point (pI)

38.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4283 PF14111 1 - 66 1.2e-10 Domain of unknown function (DUF4283)
zf-CCHC_4 PF14392 133 - 180 3e-09 Zinc knuckle
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014270)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G61660 AT3G61660
fragaria_vesca FvH4_5g04090 FvH4_7g16050
malus_domestica MD07G1146000.v1.1
prunus_persica Prupe.2G184300_v2.0.a1 Prupe.5G115500_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0358991 RchiOBHm_Chr7g0195411
rosa_multiflora Rmu_sc0004044.1_g000004
rosa_roxburghii Rroxscaffold_4G00297480
rosa_rugosa Rorug01G0266900
rosa_samantha Rh1AG280200 Rh1BG247200 Rh1CG264600 Rh1DG275500
rosa_wichuraiana Rw1G024910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 827
Acc36I ACCTGC 1 cut(s) 779
AccB7I CCANNNNNTGG 1 cut(s) 859
AciI CCGC 1 cut(s) 299
AclWI GGATC 7 cut(s) 325, 331, 675, 700, 843, 856, 932
AcsI RAATTY 1 cut(s) 32
AcyI GRCGYC 1 cut(s) 824
AfaI GTAC 1 cut(s) 206
AfiI CCNNNNNNNGG 4 cut(s) 244, 330, 331, 859
AgsI TTSAA 2 cut(s) 46, 743
AjnI CCWGG 2 cut(s) 309, 654
AluBI AGCT 3 cut(s) 430, 463, 900
AluI AGCT 3 cut(s) 430, 463, 900
Alw26I GTCTC 2 cut(s) 521, 735
AlwI GGATC 7 cut(s) 325, 331, 675, 700, 843, 856, 932
AoxI GGCC 1 cut(s) 585
ApeKI GCWGC 3 cut(s) 358, 534, 773
ApoI RAATTY 1 cut(s) 32
AspA2I CCTAGG 1 cut(s) 632
AspLEI GCGC 1 cut(s) 358
AspS9I GGNCC 3 cut(s) 20, 164, 796
AsuC2I CCSGG 1 cut(s) 221
AsuHPI GGTGA 3 cut(s) 116, 346, 463
AvaII GGWCC 3 cut(s) 20, 164, 796
AvrII CCTAGG 1 cut(s) 632
AxyI CCTNAGG 1 cut(s) 735
BamHI GGATCC 1 cut(s) 848
BauI CACGAG 1 cut(s) 191
BbvCI CCTCAGC 1 cut(s) 639
BbvI GCAGC 3 cut(s) 345, 521, 760
BccI CCATC 1 cut(s) 718
BceAI ACGGC 1 cut(s) 248
BcgI CGANNNNNNTGC 2 cut(s) 335, 369
BciT130I CCWGG 2 cut(s) 311, 656
BcnI CCSGG 1 cut(s) 221
BcoDI GTCTC 2 cut(s) 521, 735
BfaI CTAG 3 cut(s) 633, 680, 812
BfuAI ACCTGC 1 cut(s) 779
BglI GCCNNNNNGGC 1 cut(s) 269
BisI GCNGC 3 cut(s) 359, 535, 774
BlnI CCTAGG 1 cut(s) 632
BlpI GCTNAGC 1 cut(s) 138
BlsI GCNGC 3 cut(s) 360, 536, 775
Bme1390I CCNGG 3 cut(s) 221, 311, 656
Bme18I GGWCC 3 cut(s) 20, 164, 796
BmgT120I GGNCC 3 cut(s) 20, 164, 796
BmiI GGNNCC 2 cut(s) 714, 850
BmrFI CCNGG 3 cut(s) 221, 311, 656
BmsI GCATC 1 cut(s) 785
Bpu10I CCTNAGC 1 cut(s) 639
Bpu1102I GCTNAGC 1 cut(s) 138
BpuMI CCSGG 1 cut(s) 221
BsaAI YACGTR 1 cut(s) 290
BsaHI GRCGYC 1 cut(s) 824
BsaJI CCNNGG 2 cut(s) 167, 632
BsaXI ACNNNNNCTCC 2 cut(s) 713, 743
Bsc4I CCNNNNNNNGG 4 cut(s) 244, 330, 331, 859
Bse118I RCCGGY 1 cut(s) 715
Bse1I ACTGG 1 cut(s) 349
Bse21I CCTNAGG 1 cut(s) 735
BseBI CCWGG 2 cut(s) 311, 656
BseDI CCNNGG 2 cut(s) 167, 632
BseGI GGATG 3 cut(s) 232, 406, 568
BseLI CCNNNNNNNGG 4 cut(s) 244, 330, 331, 859
BseMII CTCAG 4 cut(s) 129, 317, 630, 749
BseNI ACTGG 1 cut(s) 349
BseRI GAGGAG 1 cut(s) 723
BseXI GCAGC 3 cut(s) 345, 521, 760
BseYI CCCAGC 1 cut(s) 196
BshFI GGCC 1 cut(s) 587
BsiSI CCGG 4 cut(s) 221, 406, 458, 716
BslFI GGGAC 3 cut(s) 218, 698, 811
BslI CCNNNNNNNGG 4 cut(s) 244, 330, 331, 859
BsmAI GTCTC 2 cut(s) 521, 735
BsmFI GGGAC 3 cut(s) 218, 698, 811
BsnI GGCC 1 cut(s) 587
Bsp143I GATC 7 cut(s) 106, 317, 336, 667, 692, 848, 924
Bsp1720I GCTNAGC 1 cut(s) 138
BspACI CCGC 1 cut(s) 299
BspANI GGCC 1 cut(s) 587
BspCNI CTCAG 4 cut(s) 130, 318, 631, 748
BspLI GGNNCC 2 cut(s) 714, 850
BspMI ACCTGC 1 cut(s) 779
BspPI GGATC 7 cut(s) 325, 331, 675, 700, 843, 856, 932
BsrFI RCCGGY 1 cut(s) 715
BsrI ACTGG 1 cut(s) 349
BssAI RCCGGY 1 cut(s) 715
BssECI CCNNGG 2 cut(s) 167, 632
BssMI GATC 7 cut(s) 106, 317, 336, 667, 692, 848, 924
BssNI GRCGYC 1 cut(s) 824
BssSI CACGAG 1 cut(s) 191
BssT1I CCWWGG 2 cut(s) 167, 632
Bst2BI CACGAG 1 cut(s) 191
Bst2UI CCWGG 2 cut(s) 311, 656
Bst4CI ACNGT 2 cut(s) 506, 907
Bst6I CTCTTC 1 cut(s) 595
BstACI GRCGYC 1 cut(s) 824
BstBAI YACGTR 1 cut(s) 290
BstC8I GCNNGC 2 cut(s) 585, 771
BstDEI CTNAG 4 cut(s) 138, 326, 639, 735
BstF5I GGATG 3 cut(s) 232, 406, 568
BstHHI GCGC 1 cut(s) 358
BstKTI GATC 7 cut(s) 109, 320, 339, 670, 695, 851, 927
BstMAI GTCTC 2 cut(s) 521, 735
BstMBI GATC 7 cut(s) 106, 317, 336, 667, 692, 848, 924
BstMWI GCNNNNNNNGC 1 cut(s) 269
BstNI CCWGG 2 cut(s) 311, 656
BstNSI RCATGY 1 cut(s) 773
BstSCI CCNGG 3 cut(s) 219, 309, 654
BstSNI TACGTA 1 cut(s) 290
BstV1I GCAGC 3 cut(s) 345, 521, 760
BstX2I RGATCY 3 cut(s) 667, 848, 924
BstYI RGATCY 3 cut(s) 667, 848, 924
Bsu36I CCTNAGG 1 cut(s) 735
BsuRI GGCC 1 cut(s) 587
BtsCI GGATG 3 cut(s) 232, 406, 568
BtsI GCAGTG 1 cut(s) 918
BtsIMutI CAGTG 1 cut(s) 918
BveI ACCTGC 1 cut(s) 779
Cac8I GCNNGC 2 cut(s) 585, 771
CfoI GCGC 1 cut(s) 358
Cfr10I RCCGGY 1 cut(s) 715
Cfr13I GGNCC 3 cut(s) 20, 164, 796
CsiI ACCWGGT 2 cut(s) 309, 654
Csp6I GTAC 1 cut(s) 205
CviAII CATG 4 cut(s) 158, 521, 766, 770
CviQI GTAC 1 cut(s) 205
DdeI CTNAG 4 cut(s) 138, 326, 639, 735
DpnI GATC 7 cut(s) 108, 319, 338, 669, 694, 850, 926
DpnII GATC 7 cut(s) 106, 317, 336, 667, 692, 848, 924
Eam1104I CTCTTC 1 cut(s) 595
EarI CTCTTC 1 cut(s) 595
Eco105I TACGTA 1 cut(s) 290
Eco130I CCWWGG 2 cut(s) 167, 632
Eco147I AGGCCT 1 cut(s) 587
Eco47I GGWCC 3 cut(s) 20, 164, 796
Eco81I CCTNAGG 1 cut(s) 735
EcoRII CCWGG 2 cut(s) 309, 654
EcoT14I CCWWGG 2 cut(s) 167, 632
EcoT22I ATGCAT 1 cut(s) 771
ErhI CCWWGG 2 cut(s) 167, 632
FaeI CATG 4 cut(s) 161, 524, 769, 773
FaqI GGGAC 3 cut(s) 218, 698, 811
FatI CATG 4 cut(s) 157, 520, 765, 769
Fnu4HI GCNGC 3 cut(s) 359, 535, 774
FokI GGATG 3 cut(s) 239, 413, 575
Fsp4HI GCNGC 3 cut(s) 359, 535, 774
FspBI CTAG 3 cut(s) 633, 680, 812
GlaI GCGC 1 cut(s) 357
GluI GCNGC 3 cut(s) 359, 535, 774
GsaI CCCAGC 1 cut(s) 200
HaeIII GGCC 1 cut(s) 587
HapII CCGG 4 cut(s) 221, 406, 458, 716
HhaI GCGC 1 cut(s) 358
Hin1I GRCGYC 1 cut(s) 824
Hin1II CATG 4 cut(s) 161, 524, 769, 773
Hin6I GCGC 1 cut(s) 356
HinP1I GCGC 1 cut(s) 356
HincII GTYRAC 1 cut(s) 549
HindII GTYRAC 1 cut(s) 549
HinfI GANTC 6 cut(s) 91, 241, 385, 603, 728, 931
HpaII CCGG 4 cut(s) 221, 406, 458, 716
HphI GGTGA 3 cut(s) 116, 346, 463
Hpy166II GTNNAC 1 cut(s) 549
Hpy188I TCNGA 1 cut(s) 890
Hpy188III TCNNGA 3 cut(s) 95, 928, 939
Hpy8I GTNNAC 1 cut(s) 549
Hpy99I CGWCG 1 cut(s) 542
HpyAV CCTTC 3 cut(s) 405, 553, 641
HpyCH4III ACNGT 2 cut(s) 506, 907
HpyCH4IV ACGT 2 cut(s) 289, 824
HpyCH4V TGCA 6 cut(s) 157, 361, 583, 769, 776, 788
HpyF10VI GCNNNNNNNGC 1 cut(s) 269
HpyF3I CTNAG 4 cut(s) 138, 326, 639, 735
HpySE526I ACGT 2 cut(s) 289, 824
Hsp92I GRCGYC 1 cut(s) 824
Hsp92II CATG 4 cut(s) 161, 524, 769, 773
HspAI GCGC 1 cut(s) 356
Kzo9I GATC 7 cut(s) 106, 317, 336, 667, 692, 848, 924
LmnI GCTCC 2 cut(s) 460, 712
Lsp1109I GCAGC 3 cut(s) 345, 521, 760
LweI GCATC 1 cut(s) 785
MabI ACCWGGT 2 cut(s) 309, 654
MaeI CTAG 3 cut(s) 633, 680, 812
MaeII ACGT 2 cut(s) 289, 824
MaeIII GTNAC 4 cut(s) 143, 290, 500, 915
MalI GATC 7 cut(s) 108, 319, 338, 669, 694, 850, 926
MboI GATC 7 cut(s) 106, 317, 336, 667, 692, 848, 924
MboII GAAGA 2 cut(s) 383, 582
MfeI CAATTG 1 cut(s) 578
MflI RGATCY 3 cut(s) 667, 848, 924
MluCI AATT 4 cut(s) 32, 63, 578, 817
MlyI GAGTC 2 cut(s) 597, 737
MnlI CCTC 7 cut(s) 127, 375, 482, 598, 634, 744, 809
Mph1103I ATGCAT 1 cut(s) 771
MseI TTAA 2 cut(s) 611, 663
MspI CCGG 4 cut(s) 221, 406, 458, 716
MspR9I CCNGG 3 cut(s) 221, 311, 656
MunI CAATTG 1 cut(s) 578
MvaI CCWGG 2 cut(s) 311, 656
MwoI GCNNNNNNNGC 1 cut(s) 269
NciI CCSGG 1 cut(s) 221
NdeII GATC 7 cut(s) 106, 317, 336, 667, 692, 848, 924
NlaIII CATG 4 cut(s) 161, 524, 769, 773
NlaIV GGNNCC 2 cut(s) 714, 850
NsiI ATGCAT 1 cut(s) 771
NspI RCATGY 1 cut(s) 773
PaeI GCATGC 1 cut(s) 773
PceI AGGCCT 1 cut(s) 587
PfeI GAWTC 4 cut(s) 91, 241, 385, 931
PflMI CCANNNNNTGG 1 cut(s) 859
PkrI GCNGC 3 cut(s) 360, 536, 775
PleI GAGTC 2 cut(s) 597, 736
PpsI GAGTC 2 cut(s) 597, 736
Ppu21I YACGTR 1 cut(s) 290
Psp6I CCWGG 2 cut(s) 309, 654
PspFI CCCAGC 1 cut(s) 196
PspGI CCWGG 2 cut(s) 309, 654
PspN4I GGNNCC 2 cut(s) 714, 850
PspPI GGNCC 3 cut(s) 20, 164, 796
PsuI RGATCY 3 cut(s) 667, 848, 924
RsaI GTAC 1 cut(s) 206
RsaNI GTAC 1 cut(s) 205
SaqAI TTAA 2 cut(s) 611, 663
SatI GCNGC 3 cut(s) 359, 535, 774
Sau3AI GATC 7 cut(s) 106, 317, 336, 667, 692, 848, 924
Sau96I GGNCC 3 cut(s) 20, 164, 796
SchI GAGTC 2 cut(s) 597, 737
ScrFI CCNGG 3 cut(s) 221, 311, 656
SexAI ACCWGGT 2 cut(s) 309, 654
SfaNI GCATC 1 cut(s) 785
SinI GGWCC 3 cut(s) 20, 164, 796
SnaBI TACGTA 1 cut(s) 290
SphI GCATGC 1 cut(s) 773
Sse9I AATT 4 cut(s) 32, 63, 578, 817
SseBI AGGCCT 1 cut(s) 587
SsiI CCGC 1 cut(s) 299
SspMI CTAG 3 cut(s) 633, 680, 812
StuI AGGCCT 1 cut(s) 587
StyD4I CCNGG 3 cut(s) 219, 309, 654
StyI CCWWGG 2 cut(s) 167, 632
TaaI ACNGT 2 cut(s) 506, 907
TaiI ACGT 2 cut(s) 292, 827
TaqI TCGA 5 cut(s) 10, 320, 345, 695, 895
TasI AATT 4 cut(s) 32, 63, 578, 817
TfiI GAWTC 4 cut(s) 91, 241, 385, 931
Tru1I TTAA 2 cut(s) 611, 663
Tru9I TTAA 2 cut(s) 611, 663
TscAI CASTG 1 cut(s) 918
TseI GCWGC 3 cut(s) 358, 534, 773
TspDTI ATGAA 4 cut(s) 377, 432, 492, 579
TspGWI ACGGA 1 cut(s) 329
TspRI CASTG 1 cut(s) 918
Van91I CCANNNNNTGG 1 cut(s) 859
VpaK11BI GGWCC 3 cut(s) 20, 164, 796
XapI RAATTY 1 cut(s) 32
XceI RCATGY 1 cut(s) 773
XmaJI CCTAGG 1 cut(s) 632
XspI CTAG 3 cut(s) 633, 680, 812
ZraI GACGTC 1 cut(s) 825
Zsp2I ATGCAT 1 cut(s) 771
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.