FvH4_7g16050

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0014270
Physical Location & Seq
Forward (+)
13813327 .. 13814049
723 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g16050.t1

Sequence Viewer

Length: 414 bp
ATGCAGCAAACAGTGGAAGGCAAAGAAGATCATGAAGCAGCATTGGCCATATGGGACTGTGGCAGCCCTTTGTATGACTCGTATGAACTGGCATCGGTTAGTCATCTAATCGAGCGCCATATGATGGCATTTCCATATCTTGGAGGATCATCGAAGCGGTTCATAGCCAAGTTCTCTCGTTCCTCCTCATCGGAGAGGACCTTGACTACTAGTAGTACTACTACTACAATGAAGGAGGCTAAAGGGTCTAATTCAATGGAGGAAAGCTTGAGCGAAATCATGGGGATCAAGAAGATGTGGAAGAGGAAGGGTCTGTTAGGAGGAAAGAAAGACAAGACCAAGAAAATGAAGACTGCTGGGCGTTCTGGCATTTACAGGAGGCTTGGTCTCTGGAGGAAGAAGGAACGCAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

138

Amino Acids

15.53

Weight (kDa)

10.04

Isoelectric Point (pI)

62.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014270)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G61660 AT3G61660
fragaria_vesca FvH4_5g04090 FvH4_7g16050
malus_domestica MD07G1146000.v1.1
prunus_persica Prupe.2G184300_v2.0.a1 Prupe.5G115500_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0358991 RchiOBHm_Chr7g0195411
rosa_multiflora Rmu_sc0004044.1_g000004
rosa_roxburghii Rroxscaffold_4G00297480
rosa_rugosa Rorug01G0266900
rosa_samantha Rh1AG280200 Rh1BG247200 Rh1CG264600 Rh1DG275500
rosa_wichuraiana Rw1G024910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 399
Acc36I ACCTGC 1 cut(s) 399
AccB7I CCANNNNNTGG 2 cut(s) 124, 140
AciI CCGC 1 cut(s) 157
AclWI GGATC 2 cut(s) 154, 293
AcoI YGGCCR 1 cut(s) 45
AfaI GTAC 1 cut(s) 217
AfiI CCNNNNNNNGG 2 cut(s) 124, 140
AgsI TTSAA 1 cut(s) 255
AhlI ACTAGT 1 cut(s) 209
AluBI AGCT 1 cut(s) 267
AluI AGCT 1 cut(s) 267
Alw26I GTCTC 1 cut(s) 392
AlwI GGATC 2 cut(s) 154, 293
AoxI GGCC 1 cut(s) 45
ApeKI GCWGC 3 cut(s) 4, 38, 63
Asp700I GAANNNNTTC 1 cut(s) 158
AspLEI GCGC 1 cut(s) 117
AspS9I GGNCC 1 cut(s) 198
AvaII GGWCC 1 cut(s) 198
BalI TGGCCA 1 cut(s) 47
BbsI GAAGAC 1 cut(s) 356
BbvI GCAGC 3 cut(s) 16, 50, 75
BccI CCATC 1 cut(s) 118
BcoDI GTCTC 1 cut(s) 392
BcuI ACTAGT 1 cut(s) 209
BfaI CTAG 1 cut(s) 210
BfoI RGCGCY 1 cut(s) 118
BfuAI ACCTGC 1 cut(s) 399
BisI GCNGC 3 cut(s) 5, 39, 64
BlsI GCNGC 3 cut(s) 6, 40, 65
BmcAI AGTACT 1 cut(s) 217
Bme18I GGWCC 1 cut(s) 198
BmgT120I GGNCC 1 cut(s) 198
BmsI GCATC 1 cut(s) 101
BpiI GAAGAC 1 cut(s) 356
BpmI CTGGAG 1 cut(s) 412
BpuEI CTTGAG 1 cut(s) 289
BsaI GGTCTC 1 cut(s) 392
BsaXI ACNNNNNCTCC 2 cut(s) 370, 400
Bsc4I CCNNNNNNNGG 2 cut(s) 124, 140
Bse1I ACTGG 1 cut(s) 93
BseLI CCNNNNNNNGG 2 cut(s) 124, 140
BseNI ACTGG 1 cut(s) 93
BseRI GAGGAG 1 cut(s) 175
BseXI GCAGC 3 cut(s) 16, 50, 75
BseYI CCCAGC 1 cut(s) 356
BshFI GGCC 1 cut(s) 47
BslFI GGGAC 1 cut(s) 68
BslI CCNNNNNNNGG 2 cut(s) 124, 140
BsmAI GTCTC 1 cut(s) 392
BsmFI GGGAC 1 cut(s) 68
BsnI GGCC 1 cut(s) 47
Bso31I GGTCTC 1 cut(s) 392
Bsp143I GATC 3 cut(s) 28, 146, 285
BspACI CCGC 1 cut(s) 157
BspANI GGCC 1 cut(s) 47
BspHI TCATGA 1 cut(s) 31
BspMI ACCTGC 1 cut(s) 399
BspPI GGATC 2 cut(s) 154, 293
BspTNI GGTCTC 1 cut(s) 392
BsrI ACTGG 1 cut(s) 93
BssMI GATC 3 cut(s) 28, 146, 285
Bst4CI ACNGT 2 cut(s) 13, 59
Bst6I CTCTTC 1 cut(s) 296
BstH2I RGCGCY 1 cut(s) 118
BstHHI GCGC 1 cut(s) 117
BstKTI GATC 3 cut(s) 31, 149, 288
BstMAI GTCTC 1 cut(s) 392
BstMBI GATC 3 cut(s) 28, 146, 285
BstMWI GCNNNNNNNGC 1 cut(s) 44
BstV1I GCAGC 3 cut(s) 16, 50, 75
BstV2I GAAGAC 1 cut(s) 356
BsuRI GGCC 1 cut(s) 47
BtsIMutI CAGTG 1 cut(s) 18
BveI ACCTGC 1 cut(s) 399
CciI TCATGA 1 cut(s) 31
CfoI GCGC 1 cut(s) 117
Cfr13I GGNCC 1 cut(s) 198
Csp6I GTAC 1 cut(s) 216
CviAII CATG 2 cut(s) 32, 280
CviJI RGCY 6 cut(s) 47, 66, 167, 239, 267, 382
CviKI_1 RGCY 6 cut(s) 47, 66, 167, 239, 267, 382
CviQI GTAC 1 cut(s) 216
DpnI GATC 3 cut(s) 30, 148, 287
DpnII GATC 3 cut(s) 28, 146, 285
EaeI YGGCCR 1 cut(s) 45
Eam1104I CTCTTC 1 cut(s) 296
EarI CTCTTC 1 cut(s) 296
Eco31I GGTCTC 1 cut(s) 392
Eco47I GGWCC 1 cut(s) 198
EcoO109I RGGNCCY 1 cut(s) 198
FaeI CATG 2 cut(s) 35, 283
FaqI GGGAC 1 cut(s) 68
FatI CATG 2 cut(s) 31, 279
FauNDI CATATG 2 cut(s) 50, 120
Fnu4HI GCNGC 3 cut(s) 5, 39, 64
Fsp4HI GCNGC 3 cut(s) 5, 39, 64
FspBI CTAG 1 cut(s) 210
GlaI GCGC 1 cut(s) 116
GluI GCNGC 3 cut(s) 5, 39, 64
GsaI CCCAGC 1 cut(s) 360
GsuI CTGGAG 1 cut(s) 412
HaeII RGCGCY 1 cut(s) 118
HaeIII GGCC 1 cut(s) 47
HhaI GCGC 1 cut(s) 117
Hin1II CATG 2 cut(s) 35, 283
Hin6I GCGC 1 cut(s) 115
HinP1I GCGC 1 cut(s) 115
HindIII AAGCTT 1 cut(s) 265
HinfI GANTC 1 cut(s) 77
Hpy188I TCNGA 1 cut(s) 193
Hpy188III TCNNGA 3 cut(s) 32, 289, 391
HpyAV CCTTC 4 cut(s) 11, 226, 301, 394
HpyCH4III ACNGT 2 cut(s) 13, 59
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 1 cut(s) 44
Hsp92II CATG 2 cut(s) 35, 283
HspAI GCGC 1 cut(s) 115
Kzo9I GATC 3 cut(s) 28, 146, 285
LpnPI CCDG 6 cut(s) 74, 342, 351, 361, 376, 394
Lsp1109I GCAGC 3 cut(s) 16, 50, 75
LweI GCATC 1 cut(s) 101
MaeI CTAG 1 cut(s) 210
MalI GATC 3 cut(s) 30, 148, 287
MboI GATC 3 cut(s) 28, 146, 285
MboII GAAGA 5 cut(s) 38, 304, 313, 361, 409
MlsI TGGCCA 1 cut(s) 47
MluCI AATT 1 cut(s) 250
MluNI TGGCCA 1 cut(s) 47
MlyI GAGTC 1 cut(s) 71
Mox20I TGGCCA 1 cut(s) 47
MroXI GAANNNNTTC 1 cut(s) 158
MscI TGGCCA 1 cut(s) 47
Msp20I TGGCCA 1 cut(s) 47
MwoI GCNNNNNNNGC 1 cut(s) 44
NdeI CATATG 2 cut(s) 50, 120
NdeII GATC 3 cut(s) 28, 146, 285
NlaIII CATG 2 cut(s) 35, 283
PagI TCATGA 1 cut(s) 31
PaqCI CACCTGC 1 cut(s) 399
PdmI GAANNNNTTC 1 cut(s) 158
PflMI CCANNNNNTGG 2 cut(s) 124, 140
PkrI GCNGC 3 cut(s) 6, 40, 65
PleI GAGTC 1 cut(s) 71
PpsI GAGTC 1 cut(s) 71
PpuMI RGGWCCY 1 cut(s) 198
Psp5II RGGWCCY 1 cut(s) 198
PspFI CCCAGC 1 cut(s) 356
PspPI GGNCC 1 cut(s) 198
PspPPI RGGWCCY 1 cut(s) 198
RsaI GTAC 1 cut(s) 217
RsaNI GTAC 1 cut(s) 216
SatI GCNGC 3 cut(s) 5, 39, 64
Sau3AI GATC 3 cut(s) 28, 146, 285
Sau96I GGNCC 1 cut(s) 198
ScaI AGTACT 1 cut(s) 217
SchI GAGTC 1 cut(s) 71
SetI ASST 3 cut(s) 203, 269, 413
SfaNI GCATC 1 cut(s) 101
SinI GGWCC 1 cut(s) 198
SmlI CTYRAG 1 cut(s) 268
SmoI CTYRAG 1 cut(s) 268
SpeI ACTAGT 1 cut(s) 209
Sse9I AATT 1 cut(s) 250
SsiI CCGC 1 cut(s) 157
SspMI CTAG 1 cut(s) 210
TaaI ACNGT 2 cut(s) 13, 59
TaqI TCGA 2 cut(s) 111, 152
TasI AATT 1 cut(s) 250
TatI WGTACW 1 cut(s) 215
TscAI CASTG 1 cut(s) 18
TseI GCWGC 3 cut(s) 4, 38, 63
TspDTI ATGAA 5 cut(s) 48, 99, 151, 245, 362
TspRI CASTG 1 cut(s) 18
Van91I CCANNNNNTGG 2 cut(s) 124, 140
VpaK11BI GGWCC 1 cut(s) 198
XmnI GAANNNNTTC 1 cut(s) 158
XspI CTAG 1 cut(s) 210
ZrmI AGTACT 1 cut(s) 217
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.