Rh1AG280200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0014270
Physical Location & Seq
Forward (+)
50897437 .. 50898466
1030 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG280200.1

Sequence Viewer

Length: 411 bp
ATGCAAATGCAGGAAACAGTGGAAGGAAAAGGAGATCATGAAGCGGCATTGGCTATATGGGACTGTGGCAGCCCCTTGTATGACTCGTATGAACTGGCATCGGTTAGTCATCTAATCGAGCGCCATCTGATGGCATTCCCATCTCTTGGAGGATCATCGAAGCGGTTCATAGCCAAGTTCTCTCATTCTTCTTCATCGAAGACGACCTCCACTACTAGTACTACAATGAAAGAGGCAAAAGGGTCTGATTCAATGGAGGAAAACTTGAGCAAGATCTTGGGGATCAAGAAGATGTGGAAGAGGAAGGGTTTGTTTGGAGCAACGAAAGAAAAGACCAAGAAAATGAAGACTACTGGATTTTCTGGCTTTTACAGTAGGTTTGGTCTCTGGAGGAAGAAGGAATGCAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

136

Amino Acids

15.25

Weight (kDa)

9.73

Isoelectric Point (pI)

49.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014270)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G61660 AT3G61660
fragaria_vesca FvH4_5g04090 FvH4_7g16050
malus_domestica MD07G1146000.v1.1
prunus_persica Prupe.2G184300_v2.0.a1 Prupe.5G115500_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0358991 RchiOBHm_Chr7g0195411
rosa_multiflora Rmu_sc0004044.1_g000004
rosa_roxburghii Rroxscaffold_4G00297480
rosa_rugosa Rorug01G0266900
rosa_samantha Rh1AG280200 Rh1BG247200 Rh1CG264600 Rh1DG275500
rosa_wichuraiana Rw1G024910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 396
Acc36I ACCTGC 1 cut(s) 396
AccB7I CCANNNNNTGG 2 cut(s) 130, 146
AciI CCGC 2 cut(s) 44, 163
AclWI GGATC 2 cut(s) 160, 290
AfaI GTAC 1 cut(s) 220
AfiI CCNNNNNNNGG 2 cut(s) 130, 146
AgsI TTSAA 1 cut(s) 252
AhlI ACTAGT 1 cut(s) 215
Alw26I GTCTC 1 cut(s) 389
AlwI GGATC 2 cut(s) 160, 290
ApeKI GCWGC 1 cut(s) 69
Asp700I GAANNNNTTC 1 cut(s) 164
AspLEI GCGC 1 cut(s) 123
BbsI GAAGAC 2 cut(s) 206, 353
BbvI GCAGC 1 cut(s) 81
BccI CCATC 3 cut(s) 124, 132, 148
BcoDI GTCTC 1 cut(s) 389
BcuI ACTAGT 1 cut(s) 215
BfaI CTAG 1 cut(s) 216
BfoI RGCGCY 1 cut(s) 124
BfuAI ACCTGC 1 cut(s) 396
BglII AGATCT 1 cut(s) 273
BisI GCNGC 2 cut(s) 45, 70
BlsI GCNGC 2 cut(s) 46, 71
BmcAI AGTACT 1 cut(s) 220
BmsI GCATC 1 cut(s) 107
BpiI GAAGAC 2 cut(s) 206, 353
BpmI CTGGAG 1 cut(s) 409
BpuEI CTTGAG 1 cut(s) 286
BsaI GGTCTC 1 cut(s) 389
Bsc4I CCNNNNNNNGG 2 cut(s) 130, 146
Bse1I ACTGG 2 cut(s) 99, 358
BseLI CCNNNNNNNGG 2 cut(s) 130, 146
BseNI ACTGG 2 cut(s) 99, 358
BseXI GCAGC 1 cut(s) 81
BslFI GGGAC 1 cut(s) 74
BslI CCNNNNNNNGG 2 cut(s) 130, 146
BsmAI GTCTC 1 cut(s) 389
BsmFI GGGAC 1 cut(s) 74
BsmI GAATGC 2 cut(s) 134, 407
Bso31I GGTCTC 1 cut(s) 389
Bsp143I GATC 4 cut(s) 34, 152, 273, 282
BspACI CCGC 2 cut(s) 44, 163
BspHI TCATGA 1 cut(s) 37
BspMI ACCTGC 1 cut(s) 396
BspPI GGATC 2 cut(s) 160, 290
BspTNI GGTCTC 1 cut(s) 389
BsrI ACTGG 2 cut(s) 99, 358
BssMI GATC 4 cut(s) 34, 152, 273, 282
Bst4CI ACNGT 3 cut(s) 19, 65, 374
Bst6I CTCTTC 1 cut(s) 293
BstH2I RGCGCY 1 cut(s) 124
BstHHI GCGC 1 cut(s) 123
BstKTI GATC 4 cut(s) 37, 155, 276, 285
BstMAI GTCTC 1 cut(s) 389
BstMBI GATC 4 cut(s) 34, 152, 273, 282
BstMWI GCNNNNNNNGC 1 cut(s) 50
BstV1I GCAGC 1 cut(s) 81
BstV2I GAAGAC 2 cut(s) 206, 353
BstX2I RGATCY 1 cut(s) 273
BstYI RGATCY 1 cut(s) 273
BtsIMutI CAGTG 1 cut(s) 24
BveI ACCTGC 1 cut(s) 396
CciI TCATGA 1 cut(s) 37
CfoI GCGC 1 cut(s) 123
Csp6I GTAC 1 cut(s) 219
CviAII CATG 1 cut(s) 38
CviJI RGCY 4 cut(s) 53, 72, 173, 366
CviKI_1 RGCY 4 cut(s) 53, 72, 173, 366
CviQI GTAC 1 cut(s) 219
DpnI GATC 4 cut(s) 36, 154, 275, 284
DpnII GATC 4 cut(s) 34, 152, 273, 282
Eam1104I CTCTTC 1 cut(s) 293
EarI CTCTTC 1 cut(s) 293
Eco31I GGTCTC 1 cut(s) 389
FaeI CATG 1 cut(s) 41
FaiI YATR 6 cut(s) 39, 56, 58, 81, 90, 170
FaqI GGGAC 1 cut(s) 74
FatI CATG 1 cut(s) 37
Fnu4HI GCNGC 2 cut(s) 45, 70
Fsp4HI GCNGC 2 cut(s) 45, 70
FspBI CTAG 1 cut(s) 216
GlaI GCGC 1 cut(s) 122
GluI GCNGC 2 cut(s) 45, 70
GsuI CTGGAG 1 cut(s) 409
HaeII RGCGCY 1 cut(s) 124
HhaI GCGC 1 cut(s) 123
Hin1II CATG 1 cut(s) 41
Hin6I GCGC 1 cut(s) 121
HinP1I GCGC 1 cut(s) 121
HinfI GANTC 2 cut(s) 83, 248
Hpy188I TCNGA 2 cut(s) 129, 247
Hpy188III TCNNGA 3 cut(s) 38, 286, 388
HpyAV CCTTC 3 cut(s) 17, 298, 391
HpyCH4III ACNGT 3 cut(s) 19, 65, 374
HpyCH4V TGCA 3 cut(s) 4, 10, 405
HpyF10VI GCNNNNNNNGC 1 cut(s) 50
Hsp92II CATG 1 cut(s) 41
HspAI GCGC 1 cut(s) 121
Kzo9I GATC 4 cut(s) 34, 152, 273, 282
LmnI GCTCC 1 cut(s) 317
LpnPI CCDG 5 cut(s) 80, 339, 348, 373, 391
Lsp1109I GCAGC 1 cut(s) 81
LweI GCATC 1 cut(s) 107
MaeI CTAG 1 cut(s) 216
MalI GATC 4 cut(s) 36, 154, 275, 284
MboI GATC 4 cut(s) 34, 152, 273, 282
MboII GAAGA 7 cut(s) 180, 183, 211, 301, 310, 358, 406
MflI RGATCY 1 cut(s) 273
MlyI GAGTC 1 cut(s) 77
MnlI CCTC 6 cut(s) 143, 217, 226, 250, 294, 384
MroXI GAANNNNTTC 1 cut(s) 164
Mva1269I GAATGC 2 cut(s) 134, 407
MwoI GCNNNNNNNGC 1 cut(s) 50
NdeII GATC 4 cut(s) 34, 152, 273, 282
NlaIII CATG 1 cut(s) 41
PagI TCATGA 1 cut(s) 37
PaqCI CACCTGC 1 cut(s) 396
PctI GAATGC 2 cut(s) 134, 407
PdmI GAANNNNTTC 1 cut(s) 164
PfeI GAWTC 1 cut(s) 248
PflMI CCANNNNNTGG 2 cut(s) 130, 146
PkrI GCNGC 2 cut(s) 46, 71
PleI GAGTC 1 cut(s) 77
PpsI GAGTC 1 cut(s) 77
PsuI RGATCY 1 cut(s) 273
RsaI GTAC 1 cut(s) 220
RsaNI GTAC 1 cut(s) 219
SatI GCNGC 2 cut(s) 45, 70
Sau3AI GATC 4 cut(s) 34, 152, 273, 282
ScaI AGTACT 1 cut(s) 220
SchI GAGTC 1 cut(s) 77
SetI ASST 3 cut(s) 209, 380, 410
SfaNI GCATC 1 cut(s) 107
SmlI CTYRAG 1 cut(s) 265
SmoI CTYRAG 1 cut(s) 265
SpeI ACTAGT 1 cut(s) 215
SsiI CCGC 2 cut(s) 44, 163
SspMI CTAG 1 cut(s) 216
TaaI ACNGT 3 cut(s) 19, 65, 374
TaqI TCGA 3 cut(s) 117, 158, 197
TatI WGTACW 1 cut(s) 218
TauI GCSGC 1 cut(s) 47
TfiI GAWTC 1 cut(s) 248
TscAI CASTG 1 cut(s) 24
TseI GCWGC 1 cut(s) 69
TspDTI ATGAA 6 cut(s) 54, 105, 157, 183, 242, 359
TspRI CASTG 1 cut(s) 24
Van91I CCANNNNNTGG 2 cut(s) 130, 146
XmnI GAANNNNTTC 1 cut(s) 164
XspI CTAG 1 cut(s) 216
ZrmI AGTACT 1 cut(s) 220
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.