Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0014270

Physical Location & Seq

Genomic Coordinates Forward (+)

21295853 .. 21298328

Gene Structure 2476 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1146000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGCAACAAAGATTGAGAGTCAATGAAGAACTGGGCGTATGGGATTGTGGGAGCCCTTTATACGACTCCTATGAATTGGTCTCAGTTAGTCATCTGATCGAACGGCATCTAATGGCATTGCCATATTCTCTTGGAGGATCCAGGCGGTTCATTGCCAATTTCTGTACTCATCCTTCATCAGGCATGGCTTCCACTGTATCATCAGATATGAGAAGCAGTACTACAAGGGAGGCCAAAGGGTCATCTTCATCCAATGTGGGGATTAGGAAGATTTGGAAGAGGAAGGTTTTCTTTGGAGAAGGAAAGGACAAGGCCAAGAAAAGGAAACTACGGTTTTCTGTGTTTTGCAATATGATTGGTCTGTGGAGGCAAAAGGATCAATGCAGGTTTTACAGATACTTAAACCTGGGAAGATTATCGCCTGGGGATTCCGATTCGAGCAGTCCGCAGAGGAGGAGCTCCAATTATTGGGAGGATTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

161

Amino Acids

18.44

Weight (kDa)

9.88

Isoelectric Point (pI)

65.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0014270)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61660 AT3G61660
fragaria_vesca	FvH4_5g04090 FvH4_7g16050
malus_domestica	MD07G1146000.v1.1
prunus_persica	Prupe.2G184300_v2.0.a1 Prupe.5G115500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0358991 RchiOBHm_Chr7g0195411
rosa_multiflora	Rmu_sc0004044.1_g000004
rosa_roxburghii	Rroxscaffold_4G00297480
rosa_rugosa	Rorug01G0266900
rosa_samantha	Rh1AG280200 Rh1BG247200 Rh1CG264600 Rh1DG275500
rosa_wichuraiana	Rw1G024910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	375
AccB7I	CCANNNNNTGG	1 cut(s)	468
AciI	CCGC	2 cut(s)	145, 446
AclWI	GGATC	3 cut(s)	132, 145, 384
AfaI	GTAC	2 cut(s)	166, 220
AfiI	CCNNNNNNNGG	4 cut(s)	179, 258, 321, 468
AjnI	CCWGG	3 cut(s)	140, 405, 421
AluBI	AGCT	1 cut(s)	459
AluI	AGCT	1 cut(s)	459
Alw21I	GWGCWC	1 cut(s)	461
Alw26I	GTCTC	1 cut(s)	85
AlwI	GGATC	3 cut(s)	132, 145, 384
AoxI	GGCC	2 cut(s)	231, 312
Asp700I	GAANNNNTTC	1 cut(s)	287
BamHI	GGATCC	1 cut(s)	137
BanII	GRGCYC	2 cut(s)	56, 461
BarI	GAAGNNNNNNTAC	4 cut(s)	157, 189, 205, 237
Bbv12I	GWGCWC	1 cut(s)	461
BceAI	ACGGC	1 cut(s)	119
BciT130I	CCWGG	3 cut(s)	142, 407, 423
BcoDI	GTCTC	1 cut(s)	85
BfuAI	ACCTGC	1 cut(s)	375
BmcAI	AGTACT	1 cut(s)	220
Bme1390I	CCNGG	3 cut(s)	142, 407, 423
BmiI	GGNNCC	2 cut(s)	53, 139
BmrFI	CCNGG	3 cut(s)	142, 407, 423
BmrI	ACTGGG	1 cut(s)	41
BmsI	GCATC	1 cut(s)	115
BmuI	ACTGGG	1 cut(s)	41
BsaI	GGTCTC	1 cut(s)	85
BsaJI	CCNNGG	2 cut(s)	406, 422
Bsc4I	CCNNNNNNNGG	4 cut(s)	179, 258, 321, 468
Bse1I	ACTGG	1 cut(s)	36
Bse3DI	GCAATG	2 cut(s)	116, 150
BseBI	CCWGG	3 cut(s)	142, 407, 423
BseDI	CCNNGG	2 cut(s)	406, 422
BseGI	GGATG	2 cut(s)	169, 248
BseLI	CCNNNNNNNGG	4 cut(s)	179, 258, 321, 468
BseMI	GCAATG	2 cut(s)	116, 150
BseMII	CTCAG	1 cut(s)	96
BseNI	ACTGG	1 cut(s)	36
BseRI	GAGGAG	2 cut(s)	466, 469
BshFI	GGCC	2 cut(s)	233, 314
BsiHKAI	GWGCWC	1 cut(s)	461
BslI	CCNNNNNNNGG	4 cut(s)	179, 258, 321, 468
BsmAI	GTCTC	1 cut(s)	85
BsnI	GGCC	2 cut(s)	233, 314
Bso31I	GGTCTC	1 cut(s)	85
Bsp1286I	GDGCHC	2 cut(s)	56, 461
Bsp143I	GATC	3 cut(s)	96, 137, 376
BspACI	CCGC	2 cut(s)	145, 446
BspANI	GGCC	2 cut(s)	233, 314
BspCNI	CTCAG	1 cut(s)	95
BspLI	GGNNCC	2 cut(s)	53, 139
BspMI	ACCTGC	1 cut(s)	375
BspPI	GGATC	3 cut(s)	132, 145, 384
BspTNI	GGTCTC	1 cut(s)	85
BsrDI	GCAATG	2 cut(s)	116, 150
BsrI	ACTGG	1 cut(s)	36
BssECI	CCNNGG	2 cut(s)	406, 422
BssMI	GATC	3 cut(s)	96, 137, 376
Bst2UI	CCWGG	3 cut(s)	142, 407, 423
Bst4CI	ACNGT	2 cut(s)	196, 333
Bst6I	CTCTTC	1 cut(s)	272
BstDEI	CTNAG	1 cut(s)	82
BstENI	CCTNNNNNAGG	1 cut(s)	177
BstF5I	GGATG	2 cut(s)	169, 248
BstKTI	GATC	3 cut(s)	99, 140, 379
BstMAI	GTCTC	1 cut(s)	85
BstMBI	GATC	3 cut(s)	96, 137, 376
BstNI	CCWGG	3 cut(s)	142, 407, 423
BstSCI	CCNGG	3 cut(s)	140, 405, 421
BstX2I	RGATCY	1 cut(s)	137
BstYI	RGATCY	1 cut(s)	137
BsuRI	GGCC	2 cut(s)	233, 314
BtsCI	GGATG	2 cut(s)	169, 248
BtsIMutI	CAGTG	1 cut(s)	192
BveI	ACCTGC	1 cut(s)	375
Csp6I	GTAC	2 cut(s)	165, 219
CviAII	CATG	1 cut(s)	184
CviJI	RGCY	5 cut(s)	54, 188, 233, 314, 459
CviKI_1	RGCY	5 cut(s)	54, 188, 233, 314, 459
CviQI	GTAC	2 cut(s)	165, 219
DdeI	CTNAG	1 cut(s)	82
DpnI	GATC	3 cut(s)	98, 139, 378
DpnII	GATC	3 cut(s)	96, 137, 376
Eam1104I	CTCTTC	1 cut(s)	272
EarI	CTCTTC	1 cut(s)	272
Ecl136II	GAGCTC	1 cut(s)	459
Eco24I	GRGCYC	2 cut(s)	56, 461
Eco31I	GGTCTC	1 cut(s)	85
Eco53kI	GAGCTC	1 cut(s)	459
EcoICRI	GAGCTC	1 cut(s)	459
EcoNI	CCTNNNNNAGG	1 cut(s)	177
EcoRII	CCWGG	3 cut(s)	140, 405, 421
EcoT38I	GRGCYC	2 cut(s)	56, 461
FaeI	CATG	1 cut(s)	187
FaiI	YATR	7 cut(s)	40, 61, 72, 124, 185, 209, 353
FalI	AAGNNNNNCTT	2 cut(s)	275, 307
FatI	CATG	1 cut(s)	183
FokI	GGATG	2 cut(s)	156, 235
FriOI	GRGCYC	2 cut(s)	56, 461
HaeIII	GGCC	2 cut(s)	233, 314
Hin1II	CATG	1 cut(s)	187
HinfI	GANTC	4 cut(s)	18, 65, 428, 434
Hpy188I	TCNGA	3 cut(s)	96, 205, 433
HpyAV	CCTTC	3 cut(s)	183, 277, 293
HpyCH4III	ACNGT	2 cut(s)	196, 333
HpyCH4V	TGCA	3 cut(s)	4, 348, 384
HpyF3I	CTNAG	1 cut(s)	82
Hsp92II	CATG	1 cut(s)	187
Kzo9I	GATC	3 cut(s)	96, 137, 376
LmnI	GCTCC	3 cut(s)	51, 456, 464
LpnPI	CCDG	9 cut(s)	17, 127, 154, 165, 370, 392, 408, 419, 435
LweI	GCATC	1 cut(s)	115
MalI	GATC	3 cut(s)	98, 139, 378
MboI	GATC	3 cut(s)	96, 137, 376
MboII	GAAGA	5 cut(s)	38, 237, 280, 289, 423
MflI	RGATCY	1 cut(s)	137
MhlI	GDGCHC	2 cut(s)	56, 461
MluCI	AATT	3 cut(s)	74, 157, 463
MlyI	GAGTC	2 cut(s)	27, 59
MnlI	CCTC	7 cut(s)	128, 223, 273, 360, 444, 447, 466
MroXI	GAANNNNTTC	1 cut(s)	287
MseI	TTAA	1 cut(s)	401
MspR9I	CCNGG	3 cut(s)	142, 407, 423
MvaI	CCWGG	3 cut(s)	142, 407, 423
NdeII	GATC	3 cut(s)	96, 137, 376
NlaIII	CATG	1 cut(s)	187
NlaIV	GGNNCC	2 cut(s)	53, 139
PdmI	GAANNNNTTC	1 cut(s)	287
PfeI	GAWTC	2 cut(s)	428, 434
PflMI	CCANNNNNTGG	1 cut(s)	468
PleI	GAGTC	2 cut(s)	26, 59
PpsI	GAGTC	2 cut(s)	26, 59
Psp124BI	GAGCTC	1 cut(s)	461
Psp6I	CCWGG	3 cut(s)	140, 405, 421
PspGI	CCWGG	3 cut(s)	140, 405, 421
PspN4I	GGNNCC	2 cut(s)	53, 139
PsuI	RGATCY	1 cut(s)	137
RsaI	GTAC	2 cut(s)	166, 220
RsaNI	GTAC	2 cut(s)	165, 219
SacI	GAGCTC	1 cut(s)	461
SaqAI	TTAA	1 cut(s)	401
Sau3AI	GATC	3 cut(s)	96, 137, 376
ScaI	AGTACT	1 cut(s)	220
SchI	GAGTC	2 cut(s)	27, 59
ScrFI	CCNGG	3 cut(s)	142, 407, 423
SduI	GDGCHC	2 cut(s)	56, 461
SetI	ASST	4 cut(s)	288, 389, 408, 461
SfaNI	GCATC	1 cut(s)	115
Sse9I	AATT	3 cut(s)	74, 157, 463
SsiI	CCGC	2 cut(s)	145, 446
SstI	GAGCTC	1 cut(s)	461
StyD4I	CCNGG	3 cut(s)	140, 405, 421
TaaI	ACNGT	2 cut(s)	196, 333
TaqI	TCGA	2 cut(s)	99, 437
TasI	AATT	3 cut(s)	74, 157, 463
TatI	WGTACW	2 cut(s)	164, 218
TfiI	GAWTC	2 cut(s)	428, 434
Tru1I	TTAA	1 cut(s)	401
Tru9I	TTAA	1 cut(s)	401
TscAI	CASTG	1 cut(s)	199
TspDTI	ATGAA	5 cut(s)	39, 87, 139, 165, 237
TspRI	CASTG	1 cut(s)	199
Van91I	CCANNNNNTGG	1 cut(s)	468
XagI	CCTNNNNNAGG	1 cut(s)	177
XmnI	GAANNNNTTC	1 cut(s)	287
ZrmI	AGTACT	1 cut(s)	220

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.