Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008684

Physical Location & Seq

Genomic Coordinates Forward (+)

22827539 .. 22834108

Gene Structure 6570 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G61690.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3912 bp

ATGGGTGAGCATGAATCATGGGCGGCTTCTCCGCCGTCACCCTCTGGCTTACATCCCAACGGTTTATTACCAGGCAAGGCTGCATCTGTGACTAGGCCACTCGATGCTGAGCGATGGGCCAAGGCGGAGGATCGAACTGCCAAGCTCATTGCTTGCATCCAGCCAAATCCACCTTCCGAAGATCGCCGTAATGCTGTTGCCAGTTACGTCAGGAGGCTTATCATGGAATGCTTCCCTCAGGTTCAGATCTTTATGTTTGGATCTGTACCTCTCAAGACTTATTTGCCTGATGGAGATATCGACTTAACGGCTTTTAGCGCTAACCAAAATCTGAAGGATTCTTGGGCTAATTTGGTTCGTGATATGCTTGAAAAGGAAGAGAAGAATGAGAATGCTGAATTCCATGTCAAAGAAGTCCAGTATATACAAGCAGAAGTGAAGATAATTAAGTGTCTGGTAGAGAATATTGTGGTAGATATATCTTTCAACCAGATTGGAGGGCTGTGTACATTATGCTTCCTTGAGGAGGTTGATCACTATATAAACCAGAACCATTTATTCAAGCGTAGTATTATATTGATTAAAGCCTGGTGTTACTACGAGAGCCGTATATTGGGAGCTCACCATGGGCTTATTTCGACATATGCCCTGGAAACCTTGGTTCTTTACATATTTTATCTTTTCAACAACTCATTTTCGGGACCTCTTGAGGTTCTCTATCGTTTTCTTGAGTTCTTTAGTAAGTTTGACTGGCAGAATTTTTGTCTTAGCCTCTGGGGCCCTGTTCCAGTTAGTTCACTACCAGATGTAACAGCGGAGCCTCCACGAAGGGATGTTGGAGAGTTACGAGTTAGTGAAGCGTTTTATAGAGCTTGTAGTAGAGTTTATGCAGTTAATATTGCTCCTCAAGAGATACAGGGCCAGCCTTTTGTGTCCAAACATTTCAATGTTATAGACCCTTTGCGTGAAAACAACAACCTTGGACGCAGTGTCAGTAAAGGTAACTTCTTTAGGATACGAAGCGCATTTACCCTGGGTGCCAAGAAGTTGACCAGGTTACTTGAATGCCCTAAGGAGAATTTGATCCATGAGGTTAACCAATTTTTTATGAACACATGGGAAAGACACGGCAGTGGTCGACGTCCTGATGCTCCTGGAAATGACTTATGGCTATCAAGACTGGGAGATCCTGAGCCATATCATCAAGCTGAAAATGTTAGTAATTCTTTAAACAACAAAAGAAACCAAAATGCCATCCGTCTTGGTGGGGTTCACGGAGCTCGGAGTATGCCCTCTCAACAGAATAACTGTGGAACAGAAATTACATCTAGAGTAACATATCAAACGCAAAAGAGTCGAGGCAACTCTTACCAACCTGCTCAGGAAGTCAATTCCAATCAAAGTGCTTTAAATGATAAGCTTCAGCAAACTGTTAAGCCAGAAACTCTGGTTAACAATTTTCATGGTAGGCATATTTTTGCCAGGACCCGCTCTAGCCCTGAGCTTACTGAGACACATGGTGAAGCTCTTTTACAATCTCGTCGTAGTAGAGCCGCCCCAGATGCTGGGAAACGCCAAACTAATTCTACCAGGGTTGATAGTATCAGGAAAAAAAGTCTTGAGTCTGAAACTTTGTCAAGTGGTGTTAGATATTCAGCCGACTCTTCGTCAGTTAGGCATACTCCATCCCCTCAAAGTCCTGATAGTACTGCTGACATGAGCAGTGCAGTGAACAGTTACTATGATGAAGTAGGGTCCGTTTCCGTGAATGAAGACTTCTCTGTTGCAGGGGAACAGGAAGAGCAAGATCTTGTTAACTCGATGACATCTGTTACTGGGCAAGGTTTTAATGGACACTTTCCTTTCCCTTTTAATTTTTCAACGGGTCACTTACCGTTTCCAATTACACCTTCTATCTTAGCTTCAATGGGATATGGTCAGAGGAATATGCCTGGTATTGTTCCTTCTAACCTTCCTTTCATCGAGGCACCTTGGAGTACTAATCTGCAATTTCCGCAAAACTTTGTTTCTTCACCATTTACCCATTATTTTCCCAGTGGAGCCCACCCAATTTCAGAAAAGCCGAGCAAAACTGGTAGTGATGACATGGGGTCTTCAGAAGTGAATGTCGATGAGTCTGACAATGATCTCTGGCACGAGCCAGAAAGGGGAACTCATAGTTTTGGACTTGAAAATGGTGGTTATGGAATGCATCAGGCAGATGATAAACATCAGTCATCTTTTGCAGAGCACAGTTTTGTACCTTCAAGAAGGAAAAATCGGCTGACAAGGGGGGATGATTTAGAAAATTCCCACTCTCCAGTCAGAGGAAGCAGTCAGATTCAGAGTGAGGAGAGAACTGTAGGCTCTAGATCTGTGTCTGGCGCTAGTTCCGTTCGAAGCAGGACTTCATCTGAAAGCTCCTGGGATGGATCAACTACAAGGGGGTCAAAGCCAGCTAAGGATAGACGGAATAGGAAAGTTGTGTCTGGGGCCGCATCTACACTGTATGGAAAAGGAAAGAGTGTTCCTGAGCACTCAATCCAGATTGATGATGATAACAGAGAATGGATTCCTGTATCTAGCAATGAAATAATAGATAGAGATCTGGGGCCTCGTCCTACTGTCCCTTCATTTCAAGTTCAGAGGCATCAAATACATGGTCATGAACTAGCTCAGGCAAGTGGATCAGAGTCCACAGTGTCTCTTGCTCCGTTTATCCTTGGCCATGGCATGCAACAAAACGAGGTTGATAATTCTGGATATACGTTTTATCCCACAGGACCACCTGTTCCGATTGTTGCAATGCTTCCAATGTACAATTACCAAGCTGGTGGTAATGCAACATCAGATGCTCTGGCAAGCCACCACAGTGTGGATGAAGGAGTAGAGAATCATGAACCCTGTAAAAGTTTCGACTCGTCCAGGGGACTTGATCAGTCTGAGATAGTAGTTTCTTCGCACTCCACTAGAATGGGCTCTTCTGCAGAACAGGTGGAGCGTAAGAATGATATACTCAATGGTGATTTTATAAGCCATTGGCAAAATTTGCAGTATGGCCGCTCTTGCCAGAATTCTCAACATCCGCCTGTGTTGTATCCTGCTCCTGTTGTAGTGCCACCTGCTTATCTCCAGGGGCGTTTACCATGGGATGGTCCTGGAAGACCTCTGGCTTACACCAATGCTGTGAATCAACTCATGACCTACGGACCTCGTCTTGTACCGGTTGCTCCTGTACAACCTGTTTCAACCAGGCCACCCAACATTTACCCTCGTTACGCTAATGAAACTCCCAGATATCGAAGTGGAACAGGGACCTATTTTCCAAATCCAAAGATTTCTCCTAGGGAGCAGCGGCCTACTTCTGGCATGAGGCGTGGAAATTATGGGCATGACAGAACCGACCATCATAGCGATAGAGAAGGGAATTGGAATGCTGGTTCAAAGACACGAGGTTCTGGACGTAACCACAACAATCGTAACCAAGCTGACAATAAGCCAATTTCAAGGCAAGACCGATCTGATAGGCATTGGGGGTCGTCGTACAGACATGAATCGTCCTCCTATTCTGCTCATCATTCTCAAAACGGTCCAATTCGCTCAAACACTTCACAAGATGCTTCTGGAAATATTGCTTATGGTATGTACCGATTACCACCGGGGATGAAGCAAAACAGTGTGACTTCTTCAGAGGGACACAACGTTCCATCTGTCATGATGTTTTATCCATATGGCCATAATAATGTTTACAATTCACCATCTGAACACAATGAGTATGGGTCTCTTGGACCAGGTGGTGAAGCGCCACATTTAAATGACGAGGATCAGCCAAGGTTTCGTGGTGCTGCTGCTTCTGCTCATATGTCTTCACCTGACGATCCTTCCTCGCCTCACTTCCCCAGGGGAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004652 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006396 GO:0006399 GO:0006401 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016074 GO:0016075 GO:0016077 GO:0016078 GO:0016740 GO:0016772 GO:0016779 GO:0019439 GO:0031123 GO:0031499 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0043021 GO:0043023 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043629 GO:0043630 GO:0043631 GO:0043632 GO:0043633 GO:0043634 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044877 GO:0046483 GO:0046700 GO:0070013 GO:0070566 GO:0071025 GO:0071027 GO:0071029 GO:0071035 GO:0071046 GO:0071704 GO:0090304 GO:1901360 GO:1901361 GO:1901575 GO:1990817

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NTP_transf_2

Protein Analysis

1303

Amino Acids

144.86

Weight (kDa)

6.72

Isoelectric Point (pI)

55.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MTPAP-like_central	PF22600	48 - 168	6.3e-11	Poly(A) RNA polymerase, mitochondrial-like, central palm domain
PAP-OAS1	PF26180	181 - 373	8e-91	PAP/OAS1 substrate-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008684)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61690 AT3G61690 AT3G61690
fragaria_vesca	FvH4_7g16250 FvH4_7g16250 FvH4_7g16250 FvH4_7g16250
malus_domestica	MD01G1079200.v1.1 MD07G1148100.v1.1
prunus_persica	Prupe.2G186200_v2.0.a1 Prupe.2G186200_v2.0.a1
pyrus_communis	pycom01g10750 pycom07g14710
rosa_chinensis	RchiOBHm_Chr1g0359271
rosa_laevigata	RLG00000027887
rosa_multiflora	Rmu_ssc0000135.1_g000035
rosa_roxburghii	Rroxscaffold_4G00297170
rosa_rugosa	Rorug01G0269000
rosa_samantha	Rh1AG283000 Rh1BG249200 Rh1CG267000 Rh1DG278100
rosa_wichuraiana	Rw1G025120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	3032
AarI	CACCTGC	1 cut(s)	3130
AatII	GACGTC	1 cut(s)	1144
Acc36I	ACCTGC	2 cut(s)	1384, 3130
AccB1I	GGYRCC	2 cut(s)	1037, 1987
AccB7I	CCANNNNNTGG	3 cut(s)	1565, 2875, 3152
AccBSI	CCGCTC	2 cut(s)	1491, 3063
AccI	GTMKAC	1 cut(s)	1138
AclI	AACGTT	1 cut(s)	3702
AclWI	GGATC	8 cut(s)	138, 268, 1078, 1181, 2440, 2695, 3831, 3872
AcoI	YGGCCR	3 cut(s)	2725, 3058, 3733
AcsI	RAATTY	6 cut(s)	398, 757, 1078, 2308, 3046, 3073
AcuI	CTGAAG	4 cut(s)	353, 1406, 2100, 3672
AcyI	GRCGYC	1 cut(s)	1141
AdeI	CACNNNGTG	2 cut(s)	1520, 2875
AfeI	AGCGCT	1 cut(s)	319
AfiI	CCNNNNNNNGG	8 cut(s)	526, 613, 1565, 2168, 2327, 2875, 3152, 3365
AgeI	ACCGGT	1 cut(s)	3223
AhdI	GACNNNNNGTC	3 cut(s)	989, 1666, 2110
AjuI	GAANNNNNNNTTGG	4 cut(s)	157, 189, 1894, 1926
AleI	CACNNNNGTG	2 cut(s)	1131, 2871
AloI	GAACNNNNNNTCC	8 cut(s)	2511, 2543, 2775, 2807, 3424, 3456, 3687, 3719
Alw21I	GWGCWC	4 cut(s)	622, 1282, 2253, 2538
Alw26I	GTCTC	3 cut(s)	1505, 2709, 3786
AlwI	GGATC	8 cut(s)	138, 268, 1078, 1181, 2440, 2695, 3831, 3872
AlwNI	CAGNNNCTG	1 cut(s)	1565
Aor51HI	AGCGCT	1 cut(s)	319
ApaI	GGGCCC	1 cut(s)	782
ApeKI	GCWGC	4 cut(s)	80, 3352, 3845, 3848
ApoI	RAATTY	6 cut(s)	398, 757, 1078, 2308, 3046, 3073
ArsI	GACNNNNNNTTYG	2 cut(s)	2647, 2679
AsiGI	ACCGGT	1 cut(s)	3223
Asp700I	GAANNNNTTC	1 cut(s)	2571
AspA2I	CCTAGG	1 cut(s)	3344
AspLEI	GCGC	4 cut(s)	320, 1025, 2387, 3805
AsuC2I	CCSGG	1 cut(s)	3660
AsuHPI	GGTGA	9 cut(s)	17, 30, 614, 1532, 2025, 3035, 3747, 3809, 3861
AsuII	TTCGAA	1 cut(s)	2398
AvaII	GGWCC	9 cut(s)	701, 1485, 1755, 2783, 3155, 3209, 3315, 3590, 3788
AvrII	CCTAGG	1 cut(s)	3344
AxyI	CCTNAGG	2 cut(s)	237, 1071
BaeGI	GKGCMC	1 cut(s)	782
BalI	TGGCCA	2 cut(s)	2727, 3735
BanI	GGYRCC	2 cut(s)	1037, 1987
BanII	GRGCYC	5 cut(s)	622, 782, 1282, 2065, 2981
BarI	GAAGNNNNNNTAC	6 cut(s)	1012, 1044, 1515, 1547, 1948, 1980
BauI	CACGAG	2 cut(s)	2156, 3450
BbsI	GAAGAC	4 cut(s)	1779, 2106, 3169, 3858
Bbv12I	GWGCWC	4 cut(s)	622, 1282, 2253, 2538
BbvI	GCAGC	4 cut(s)	67, 3364, 3832, 3835
BccI	CCATC	9 cut(s)	108, 284, 1262, 1693, 2423, 3146, 3414, 3715, 3766
BceAI	ACGGC	5 cut(s)	19, 171, 324, 591, 1144
BcgI	CGANNNNNNTGC	2 cut(s)	1337, 1371
BciVI	GTATCC	2 cut(s)	1008, 3108
BclI	TGATCA	2 cut(s)	532, 2935
BcnI	CCSGG	1 cut(s)	3660
BcoDI	GTCTC	3 cut(s)	1505, 2709, 3786
BfaI	CTAG	9 cut(s)	93, 1329, 1494, 2370, 2388, 2583, 2672, 2970, 3345
BfmI	CTRYAG	2 cut(s)	2361, 2985
BfoI	RGCGCY	3 cut(s)	321, 2388, 3806
BfuAI	ACCTGC	2 cut(s)	1384, 3130
BfuI	GTATCC	2 cut(s)	1008, 3108
BglI	GCCNNNNNGGC	1 cut(s)	777
BglII	AGATCT	4 cut(s)	246, 1807, 2372, 2605
BisI	GCNGC	9 cut(s)	24, 81, 1554, 2496, 3061, 3353, 3356, 3846, 3849
BlnI	CCTAGG	1 cut(s)	3344
BlpI	GCTNAGC	1 cut(s)	108
BlsI	GCNGC	9 cut(s)	25, 82, 1555, 2497, 3062, 3354, 3357, 3847, 3850
BmcAI	AGTACT	2 cut(s)	1708, 1999
Bme18I	GGWCC	9 cut(s)	701, 1485, 1755, 2783, 3155, 3209, 3315, 3590, 3788
BmeRI	GACNNNNNGTC	3 cut(s)	989, 1666, 2110
BmrI	ACTGGG	3 cut(s)	1190, 1845, 2049
BmuI	ACTGGG	3 cut(s)	1190, 1845, 2049
BpiI	GAAGAC	4 cut(s)	1779, 2106, 3169, 3858
BpmI	CTGGAG	2 cut(s)	2304, 3116
Bpu10I	CCTNAGC	6 cut(s)	1191, 1380, 1500, 2460, 2532, 2676
Bpu1102I	GCTNAGC	1 cut(s)	108
Bpu14I	TTCGAA	1 cut(s)	2398
BpuEI	CTTGAG	6 cut(s)	257, 542, 728, 749, 891, 1640
BpuMI	CCSGG	1 cut(s)	3660
BsaBI	GATNNNNATC	2 cut(s)	2229, 2604
BsaHI	GRCGYC	1 cut(s)	1141
BsaI	GGTCTC	1 cut(s)	3786
BsaWI	WCCGGW	1 cut(s)	3223
Bsc4I	CCNNNNNNNGG	8 cut(s)	526, 613, 1565, 2168, 2327, 2875, 3152, 3365
Bse118I	RCCGGY	1 cut(s)	3223
Bse1I	ACTGG	9 cut(s)	201, 418, 755, 788, 1185, 1840, 2055, 2098, 2321
Bse21I	CCTNAGG	2 cut(s)	237, 1071
Bse3DI	GCAATG	3 cut(s)	147, 2593, 2811
Bse8I	GATNNNNATC	2 cut(s)	2229, 2604
BseJI	GATNNNNATC	2 cut(s)	2229, 2604
BseLI	CCNNNNNNNGG	8 cut(s)	526, 613, 1565, 2168, 2327, 2875, 3152, 3365
BseMI	GCAATG	3 cut(s)	147, 2593, 2811
BseMII	CTCAG	9 cut(s)	99, 251, 1182, 1394, 1491, 1500, 2523, 2690, 2934
BseNI	ACTGG	9 cut(s)	201, 418, 755, 788, 1185, 1840, 2055, 2098, 2321
BseRI	GAGGAG	3 cut(s)	539, 894, 2366
BseSI	GKGCMC	1 cut(s)	782
BseXI	GCAGC	4 cut(s)	67, 3364, 3832, 3835
BseYI	CCCAGC	1 cut(s)	1565
BsgI	GTGCAG	1 cut(s)	1746
BshNI	GGYRCC	2 cut(s)	1037, 1987
BshTI	ACCGGT	1 cut(s)	3223
BsiHKAI	GWGCWC	4 cut(s)	622, 1282, 2253, 2538
BsiSI	CCGG	2 cut(s)	3224, 3659
BslFI	GGGAC	5 cut(s)	714, 2612, 2943, 3328, 3708
BslI	CCNNNNNNNGG	8 cut(s)	526, 613, 1565, 2168, 2327, 2875, 3152, 3365
BsmAI	GTCTC	3 cut(s)	1505, 2709, 3786
BsmFI	GGGAC	5 cut(s)	714, 2612, 2943, 3328, 3708
BsmI	GAATGC	5 cut(s)	233, 397, 1070, 2214, 3439
Bso31I	GGTCTC	1 cut(s)	3786
Bsp119I	TTCGAA	1 cut(s)	2398
Bsp120I	GGGCCC	1 cut(s)	778
Bsp1286I	GDGCHC	7 cut(s)	622, 782, 1282, 2065, 2253, 2538, 2981
Bsp1407I	TGTACA	3 cut(s)	506, 2817, 3235
Bsp1720I	GCTNAGC	1 cut(s)	108
Bsp19I	CCATGG	3 cut(s)	625, 2728, 3146
BspCNI	CTCAG	9 cut(s)	100, 250, 1183, 1393, 1492, 1501, 2524, 2689, 2935
BspHI	TCATGA	4 cut(s)	2665, 2896, 3198, 3714
BspMAI	CTGCAG	1 cut(s)	2989
BspMI	ACCTGC	2 cut(s)	1384, 3130
BspPI	GGATC	8 cut(s)	138, 268, 1078, 1181, 2440, 2695, 3831, 3872
BspQI	GCTCTTC	2 cut(s)	1794, 2986
BspT104I	TTCGAA	1 cut(s)	2398
BspT107I	GGYRCC	2 cut(s)	1037, 1987
BspTNI	GGTCTC	1 cut(s)	3786
BsrBI	CCGCTC	2 cut(s)	1491, 3063
BsrDI	GCAATG	3 cut(s)	147, 2593, 2811
BsrFI	RCCGGY	1 cut(s)	3223
BsrGI	TGTACA	3 cut(s)	506, 2817, 3235
BsrI	ACTGG	9 cut(s)	201, 418, 755, 788, 1185, 1840, 2055, 2098, 2321
BssAI	RCCGGY	1 cut(s)	3223
BssNI	GRCGYC	1 cut(s)	1141
BssSI	CACGAG	2 cut(s)	2156, 3450
Bst2BI	CACGAG	2 cut(s)	2156, 3450
Bst6I	CTCTTC	4 cut(s)	372, 1669, 1794, 2986
BstACI	GRCGYC	1 cut(s)	1141
BstAPI	GCANNNNNTGC	1 cut(s)	3049
BstAUI	TGTACA	3 cut(s)	506, 2817, 3235
BstBI	TTCGAA	1 cut(s)	2398
BstC8I	GCNNGC	5 cut(s)	154, 923, 2457, 2735, 2863
BstDSI	CCRYGG	3 cut(s)	625, 2728, 3146
BstENI	CCTNNNNNAGG	1 cut(s)	524
BstH2I	RGCGCY	3 cut(s)	321, 2388, 3806
BstHHI	GCGC	4 cut(s)	320, 1025, 2387, 3805
BstMAI	GTCTC	3 cut(s)	1505, 2709, 3786
BstMWI	GCNNNNNNNGC	7 cut(s)	317, 777, 1562, 2014, 3049, 3066, 3854
BstNSI	RCATGY	1 cut(s)	2737
BstSFI	CTRYAG	2 cut(s)	2361, 2985
BstSLI	GKGCMC	1 cut(s)	782
BstV1I	GCAGC	4 cut(s)	67, 3364, 3832, 3835
BstV2I	GAAGAC	4 cut(s)	1779, 2106, 3169, 3858
BstX2I	RGATCY	6 cut(s)	246, 260, 1186, 1807, 2372, 2605
BstXI	CCANNNNNNTGG	2 cut(s)	2834, 2974
BstYI	RGATCY	6 cut(s)	246, 260, 1186, 1807, 2372, 2605
Bsu36I	CCTNAGG	2 cut(s)	237, 1071
BsuI	GTATCC	2 cut(s)	1008, 3108
BtgI	CCRYGG	3 cut(s)	625, 2728, 3146
BtgZI	GCGATG	1 cut(s)	127
BtsI	GCAGTG	4 cut(s)	994, 1138, 1729, 1734
BtsIMutI	CAGTG	9 cut(s)	994, 1138, 1729, 1734, 2062, 2504, 2706, 2878, 3682
BveI	ACCTGC	2 cut(s)	1384, 3130
Cac8I	GCNNGC	5 cut(s)	154, 923, 2457, 2735, 2863
CaiI	CAGNNNCTG	1 cut(s)	1565
CciI	TCATGA	4 cut(s)	2665, 2896, 3198, 3714
CfoI	GCGC	4 cut(s)	320, 1025, 2387, 3805
Cfr10I	RCCGGY	1 cut(s)	3223
CseI	GACGC	1 cut(s)	993
CsiI	ACCWGGT	2 cut(s)	1052, 3790
CspAI	ACCGGT	1 cut(s)	3223
DraI	TTTAAA	3 cut(s)	1230, 1410, 3813
DraIII	CACNNNGTG	2 cut(s)	1520, 2875
DriI	GACNNNNNGTC	3 cut(s)	989, 1666, 2110
EaeI	YGGCCR	3 cut(s)	2725, 3058, 3733
Eam1104I	CTCTTC	4 cut(s)	372, 1669, 1794, 2986
Eam1105I	GACNNNNNGTC	3 cut(s)	989, 1666, 2110
EarI	CTCTTC	4 cut(s)	372, 1669, 1794, 2986
EciI	GGCGGA	3 cut(s)	21, 140, 3075
Ecl136II	GAGCTC	2 cut(s)	620, 1280
Eco24I	GRGCYC	5 cut(s)	622, 782, 1282, 2065, 2981
Eco31I	GGTCTC	1 cut(s)	3786
Eco32I	GATATC	2 cut(s)	298, 3299
Eco47I	GGWCC	9 cut(s)	701, 1485, 1755, 2783, 3155, 3209, 3315, 3590, 3788
Eco47III	AGCGCT	1 cut(s)	319
Eco53kI	GAGCTC	2 cut(s)	620, 1280
Eco57I	CTGAAG	4 cut(s)	353, 1406, 2100, 3672
Eco81I	CCTNAGG	2 cut(s)	237, 1071
EcoICRI	GAGCTC	2 cut(s)	620, 1280
EcoNI	CCTNNNNNAGG	1 cut(s)	524
EcoO109I	RGGNCCY	6 cut(s)	701, 778, 779, 1485, 2612, 3315
EcoRI	GAATTC	2 cut(s)	398, 3073
EcoRV	GATATC	2 cut(s)	298, 3299
EcoT22I	ATGCAT	1 cut(s)	2214
EcoT38I	GRGCYC	5 cut(s)	622, 782, 1282, 2065, 2981
FalI	AAGNNNNNCTT	2 cut(s)	2392, 2424
FaqI	GGGAC	5 cut(s)	714, 2612, 2943, 3328, 3708
FauI	CCCGC	1 cut(s)	1496
FauNDI	CATATG	3 cut(s)	643, 3730, 3861
FbaI	TGATCA	2 cut(s)	532, 2935
FblI	GTMKAC	1 cut(s)	1138
Fnu4HI	GCNGC	9 cut(s)	24, 81, 1554, 2496, 3061, 3353, 3356, 3846, 3849
FriOI	GRGCYC	5 cut(s)	622, 782, 1282, 2065, 2981
Fsp4HI	GCNGC	9 cut(s)	24, 81, 1554, 2496, 3061, 3353, 3356, 3846, 3849
FspBI	CTAG	9 cut(s)	93, 1329, 1494, 2370, 2388, 2583, 2672, 2970, 3345
GlaI	GCGC	4 cut(s)	319, 1024, 2386, 3804
GluI	GCNGC	9 cut(s)	24, 81, 1554, 2496, 3061, 3353, 3356, 3846, 3849
GsaI	CCCAGC	1 cut(s)	1569
GsuI	CTGGAG	2 cut(s)	2304, 3116
HaeII	RGCGCY	3 cut(s)	321, 2388, 3806
HapII	CCGG	2 cut(s)	3224, 3659
HgaI	GACGC	1 cut(s)	993
HhaI	GCGC	4 cut(s)	320, 1025, 2387, 3805
Hin1I	GRCGYC	1 cut(s)	1141
Hin6I	GCGC	4 cut(s)	318, 1023, 2385, 3803
HinP1I	GCGC	4 cut(s)	318, 1023, 2385, 3803
HincII	GTYRAC	5 cut(s)	1050, 1096, 1139, 1453, 1816
HindII	GTYRAC	5 cut(s)	1050, 1096, 1139, 1453, 1816
HindIII	AAGCTT	1 cut(s)	1418
HpaI	GTTAAC	3 cut(s)	1096, 1453, 1816
HpaII	CCGG	2 cut(s)	3224, 3659
HphI	GGTGA	9 cut(s)	17, 30, 614, 1532, 2025, 3035, 3747, 3809, 3861
Hpy99I	CGWCG	3 cut(s)	1143, 1545, 3544
HpyCH4IV	ACGT	5 cut(s)	207, 1141, 2768, 3463, 3702
HpyF10VI	GCNNNNNNNGC	7 cut(s)	317, 777, 1562, 2014, 3049, 3066, 3854
HpySE526I	ACGT	5 cut(s)	207, 1141, 2768, 3463, 3702
Hsp92I	GRCGYC	1 cut(s)	1141
HspAI	GCGC	4 cut(s)	318, 1023, 2385, 3803
Ksp22I	TGATCA	2 cut(s)	532, 2935
KspAI	GTTAAC	3 cut(s)	1096, 1453, 1816
LguI	GCTCTTC	2 cut(s)	1794, 2986
Lsp1109I	GCAGC	4 cut(s)	67, 3364, 3832, 3835
MabI	ACCWGGT	2 cut(s)	1052, 3790
MaeI	CTAG	9 cut(s)	93, 1329, 1494, 2370, 2388, 2583, 2672, 2970, 3345
MaeII	ACGT	5 cut(s)	207, 1141, 2768, 3463, 3702
MbiI	CCGCTC	2 cut(s)	1491, 3063
MflI	RGATCY	6 cut(s)	246, 260, 1186, 1807, 2372, 2605
MhlI	GDGCHC	7 cut(s)	622, 782, 1282, 2065, 2253, 2538, 2981
MlsI	TGGCCA	2 cut(s)	2727, 3735
MluNI	TGGCCA	2 cut(s)	2727, 3735
MlyI	GAGTC	6 cut(s)	1363, 1631, 1655, 2144, 2702, 2912
MmeI	TCCRAC	1 cut(s)	817
Mox20I	TGGCCA	2 cut(s)	2727, 3735
Mph1103I	ATGCAT	1 cut(s)	2214
MroXI	GAANNNNTTC	1 cut(s)	2571
MscI	TGGCCA	2 cut(s)	2727, 3735
MslI	CAYNNNNRTG	7 cut(s)	945, 1131, 2664, 2871, 2972, 3741, 3813
Msp20I	TGGCCA	2 cut(s)	2727, 3735
MspA1I	CMGCKG	2 cut(s)	815, 3355
MspI	CCGG	2 cut(s)	3224, 3659
Mva1269I	GAATGC	5 cut(s)	233, 397, 1070, 2214, 3439
MwoI	GCNNNNNNNGC	7 cut(s)	317, 777, 1562, 2014, 3049, 3066, 3854
NciI	CCSGG	1 cut(s)	3660
NcoI	CCATGG	3 cut(s)	625, 2728, 3146
NdeI	CATATG	3 cut(s)	643, 3730, 3861
NmeAIII	GCCGAG	1 cut(s)	2109
NmuCI	GTSAC	4 cut(s)	36, 88, 1886, 3679
NsiI	ATGCAT	1 cut(s)	2214
NspI	RCATGY	1 cut(s)	2737
NspV	TTCGAA	1 cut(s)	2398
OliI	CACNNNNGTG	2 cut(s)	1131, 2871
PaeI	GCATGC	1 cut(s)	2737
PagI	TCATGA	4 cut(s)	2665, 2896, 3198, 3714
PaqCI	CACCTGC	1 cut(s)	3130
PasI	CCCWGGG	2 cut(s)	1033, 3900
PciSI	GCTCTTC	2 cut(s)	1794, 2986
PctI	GAATGC	5 cut(s)	233, 397, 1070, 2214, 3439
PdmI	GAANNNNTTC	1 cut(s)	2571
PfeI	GAWTC	7 cut(s)	14, 338, 2341, 2572, 2893, 3190, 3554
PflFI	GACNNNGTC	1 cut(s)	3213
PflMI	CCANNNNNTGG	3 cut(s)	1565, 2875, 3152
PfoI	TCCNGGA	2 cut(s)	1153, 3157
PinAI	ACCGGT	1 cut(s)	3223
PkrI	GCNGC	9 cut(s)	25, 82, 1555, 2497, 3062, 3354, 3357, 3847, 3850
PleI	GAGTC	6 cut(s)	1362, 1630, 1655, 2143, 2701, 2912
PpsI	GAGTC	6 cut(s)	1362, 1630, 1655, 2143, 2701, 2912
PpuMI	RGGWCCY	3 cut(s)	701, 1485, 3315
PsiI	TTATAA	1 cut(s)	3032
Psp124BI	GAGCTC	2 cut(s)	622, 1282
Psp1406I	AACGTT	1 cut(s)	3702
Psp5II	RGGWCCY	3 cut(s)	701, 1485, 3315
PspFI	CCCAGC	1 cut(s)	1565
PspOMI	GGGCCC	1 cut(s)	778
PspPPI	RGGWCCY	3 cut(s)	701, 1485, 3315
PsrI	GAACNNNNNNTAC	2 cut(s)	1306, 1338
PstI	CTGCAG	1 cut(s)	2989
PstNI	CAGNNNCTG	1 cut(s)	1565
PsuI	RGATCY	6 cut(s)	246, 260, 1186, 1807, 2372, 2605
PsyI	GACNNNGTC	1 cut(s)	3213
RseI	CAYNNNNRTG	7 cut(s)	945, 1131, 2664, 2871, 2972, 3741, 3813
SacI	GAGCTC	2 cut(s)	622, 1282
SalI	GTCGAC	1 cut(s)	1137
SapI	GCTCTTC	2 cut(s)	1794, 2986
SatI	GCNGC	9 cut(s)	24, 81, 1554, 2496, 3061, 3353, 3356, 3846, 3849
ScaI	AGTACT	2 cut(s)	1708, 1999
SchI	GAGTC	6 cut(s)	1363, 1631, 1655, 2144, 2702, 2912
SduI	GDGCHC	7 cut(s)	622, 782, 1282, 2065, 2253, 2538, 2981
SexAI	ACCWGGT	2 cut(s)	1052, 3790
SfcI	CTRYAG	2 cut(s)	2361, 2985
SfuI	TTCGAA	1 cut(s)	2398
SinI	GGWCC	9 cut(s)	701, 1485, 1755, 2783, 3155, 3209, 3315, 3590, 3788
SmiI	ATTTAAAT	1 cut(s)	3813
SmiMI	CAYNNNNRTG	7 cut(s)	945, 1131, 2664, 2871, 2972, 3741, 3813
SmlI	CTYRAG	6 cut(s)	272, 521, 707, 728, 906, 1619
SmoI	CTYRAG	6 cut(s)	272, 521, 707, 728, 906, 1619
SphI	GCATGC	1 cut(s)	2737
SspI	AATATT	3 cut(s)	466, 898, 3631
SspMI	CTAG	9 cut(s)	93, 1329, 1494, 2370, 2388, 2583, 2672, 2970, 3345
SstI	GAGCTC	2 cut(s)	622, 1282
SwaI	ATTTAAAT	1 cut(s)	3813
TaiI	ACGT	5 cut(s)	210, 1144, 2771, 3466, 3705
TaqII	GACCGA	1 cut(s)	3531
TatI	WGTACW	5 cut(s)	506, 1706, 1997, 2817, 3235
TauI	GCSGC	5 cut(s)	26, 1556, 2498, 3063, 3358
TfiI	GAWTC	7 cut(s)	14, 338, 2341, 2572, 2893, 3190, 3554
TscAI	CASTG	9 cut(s)	994, 1138, 1729, 1734, 2062, 2511, 2706, 2878, 3682
TseFI	GTSAC	4 cut(s)	36, 88, 1886, 3679
TseI	GCWGC	4 cut(s)	80, 3352, 3845, 3848
Tsp45I	GTSAC	4 cut(s)	36, 88, 1886, 3679
TspGWI	ACGGA	8 cut(s)	1247, 1290, 1747, 1753, 2383, 2485, 2703, 3222
TspRI	CASTG	9 cut(s)	994, 1138, 1729, 1734, 2062, 2511, 2706, 2878, 3682
Tth111I	GACNNNGTC	1 cut(s)	3213
Van91I	CCANNNNNTGG	3 cut(s)	1565, 2875, 3152
VpaK11BI	GGWCC	9 cut(s)	701, 1485, 1755, 2783, 3155, 3209, 3315, 3590, 3788
XagI	CCTNNNNNAGG	1 cut(s)	524
XapI	RAATTY	6 cut(s)	398, 757, 1078, 2308, 3046, 3073
XbaI	TCTAGA	2 cut(s)	1328, 2369
XceI	RCATGY	1 cut(s)	2737
XmaJI	CCTAGG	1 cut(s)	3344
XmiI	GTMKAC	1 cut(s)	1138
XmnI	GAANNNNTTC	1 cut(s)	2571
XspI	CTAG	9 cut(s)	93, 1329, 1494, 2370, 2388, 2583, 2672, 2970, 3345
ZraI	GACGTC	1 cut(s)	1142
ZrmI	AGTACT	2 cut(s)	1708, 1999
Zsp2I	ATGCAT	1 cut(s)	2214

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.