Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0008684

Physical Location & Seq

Genomic Coordinates Forward (+)

51743629 .. 51751288

Gene Structure 7660 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G025120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4053 bp

ATGGGCGAACATGAAGGGTGGGCACAGCCAGCAAGTGGGCTATTGCTGAATGGCCTATTGCCCAATGAAGCCGCCTCCGTGATGCGAGTGCTGGATTCCGAGCGATGGACCAAGGCGGAGGAGAGAACGGCAGAGCTTATTGCCTGCATTCAGCCCAATCCACCCTCAGAAGAGCGCAGAATTGCCGTTGCCGATTATGTGCAGCGGCTTATCCTGAAGTGCTTCCCATGCCAGGTGTTCACTTTTGGGTCTGTGCCCCTCAAGACTTATCTGCCTGATGGAGATATTGACCTCACAGCCTTCAGCAAGACTCAAAGTTCGAAAGACTCATGGGCCCATCAGGTTCGTGATATGCTGGAGAATGAGGAGAAGAATGAGAATGCTGAATTTCGTGTCAAAGAGGTTCAATACATTCAAGCTGAAGTAAAGATAATCAAGTGCCTTGTGGAAAACATTGTAGTAGACATATCCTTTAATCAGCTGGGAGGGTTGTGCACCCTTTGTTTCCTTGAGGAGGTCGATCATCTCATAAATCAAAATCATTTGTTCAAGCGTAGTATTATACTGATAAAGGCCTGGTGTTATTATGAGAGCCGAATACTAGGCGCTCACCATGGACTTATCTCCACCTATGCTTTGGAAACATTGGTTTTATACATTTTTCATGTTTTCAACAACTCCTTTGCTGGACCACTTGAGGTCTTGTATCGCTTTCTAGAGTTCTTTAGTAAGTTTGACTGGGAGAACTTTTGTGTTAGCTTAAGGGGTCCTGTGCCCATTAGTTCTCTTCCAGATGTAACTGCCGAACCTCCTCGAAAAGATGGTGGAGAGTTACTACTAAGCGAAGTGTTTCTTGATGCGTGTAGTGCAGTGTATGCTGTCCGCCCTGGTGGTCAAGAAAATCAGGGCCAAGCTTTTGTTTCCAAACATTTTAATGTTATTGATCCTTTGAGAATCAACAACAACCTTGGACGTAGTGTTAGTAAAGGTAACTTCTTTAGGATACGCAGTGCATTTGCATTTGGGGCTAAAAGGCTGGCCAGGTTGCTTGATTGTTCAAAGGAGGATCTATGTTTCGAAGTAAATCAGTTTTTTCTCAACACTTGGGATAGACATGGAAGTGGTCATCGACCTGATGCACCACGTAATGATCTTAGGCACTTGCGACTTTCAAATGCAGACCACTTACATGGGTCTGAGAATCGCAGGAACAACTTAAGCGGCAAAAAAAATGAAAGTTCCTCTGGTCGAGATACTCAAGGTGAGGGAAAACATGGTTCACTTAGTGTTTCCTCTCAGCAGGGTAGTTATCCAATAGAAAGCATATCACGGAACAGTGTTTTTTCTAGTGTAACTGATGGTCAAAGCCAAAAGAATCATGTGAACATGAACATTGGGAGGGCCTCTGATCAGATTAGAAAGGAAATCAATCCCGACCTGGGTGCACATGTGGATAAAGGTCAGAGAAAACCAGATAGCGTGGTTAATGACCTTCACGGGAGGTTTCTTTTTGCAAGGACACGCTCTAGTCCTGAGCTTACTGATACATATAGTGAAGTTCCCTCTCAAGGTCTGCGGAATAGGGCCCCAGAGAGTGGGAAAGGCCAAACTTATTCCACAAGGTTGGATAATAGCAGGAGGAAGAACCTTGAGGCTGATAATTTAGCAAGCCACAGATTTAGATCTTCAGCTGATGATCCTTCATCTGCTAACCATATTCCATCCCATCAAAGCCTTGATGTTGTGGTTGATTCAAATAATAGCTACCAGGATGAATCTGGTTCGAGTACTGTTGCTGAAGATTTTCCGTCTATTTCAGGGACACAAGGGATGCACCAGGAGGAGCAAGATCTTGTTAACATGATGGCATCTTCTGCAGCTCATGGTTTCAATGGACAGGTTCATCTTCCCCTGAATTTGGGTTCCGGTCATTTACCATTTCCAATCCCATCTTCTGTTCTTGCTTCGATGGGATATGCTCAGAGGAATATGGGTGGCATGTTTCCCACAAATTTTCCCTTGATGGAGAGTCCTTGGGGAACGAATATGCATTTTCCTCAAGGTGTTGTTCCGTCACCTTTAACTCATTATTTCCCTGGCATGGGGTTGACATCAAATCCTGAAGAATCGGTGGAACCTGGTAATGAAGATTTTGGTTCTGTGGAGATGAACTCAAGTGAAACTGAGCATGATTTCTGGCACAACCAGGAGAGGGGATCCACTAGTGGATTTGATCATGATAATGGAGGTTTGGAAATGCTTGAGGCAGATGATAGGCAACAGTCAACCTCAGCTGGTTATAACTCCCATCCTTCATCTCGGATAGGCGCTGCTGTAAGTTCTATGCGAGTTCAACAAAAGTCCCCTAAAGAAAGCCGAGATTCAACGAGAGAAGATCATGTCGATGATTTTCAGTATCAAGATAACCGAGGAAATGAGGTATACTTTGATGACCGAGTGAGTTCTAGGTCGTTGTCGGCCAATTATACTAGTTCTGCAAGAAGCAAGACCTCCTCTGAGAGTTCTTGGGAAGGATCATCAGCAAAAGTGTCAAAGTCAACAAGGGAAAAACGGGGCAGAAAAGCTGCTCTGTCAACAGCTCCATCTACCTCATATGGGAAAGGTAAGAGTGTGTCTGAACATTCTTCTACTCAGGCAGATGATGAAAACAAAGATTGGAATCTGCCAACAACTTTAGGTGCTGAAATGGTAGAAAGAAGCACACTATCTCAACCTGTTGCTTCCTTGCATGTTCCAAGACATCAAATGCCGGGTTTTGAACCATCTCAAACAAGTGGATCAGATTCGCTGATGCCTTTCCCAGTTCTCTTAGGGCCTGGCTCACGTCAGAGAGCTACAAATGATTCTGGTGCTACCTATGCATTTTATCCTACGGGACCTCCAGTTCCATTTGTTACAATGCTACCATATTACAATTTCCCAGCAGAGGCAGGAACTTCAGATGTATCAAGCCAATTCAGTAGGGAAGATGGACCTGAAAGTGATTCTGGTCAGAACTTTGATTCCGCTGAAGGAATTGATCAACCTGAGTTAAGAATTTCTAACTCCATGGGAAGGGTTGCTCCTATTGAGCCTTCTGAGTATAAATCTGACATCCTTCACAGTGACTTTGCCAGCCATTATCAGAATTTGCAGTTTGGACGGTTATGCCAAAATCCTCGGCATTCTCCACCTATGGTTTATCCTTCACCTGTTATGGTGCCCCCTGCCTACTTGCAAGGGCGATTTCCTTGGGATGGTCCTGGGAGACCTCTCTCAGCCAATATGAATCTCATCACTCAGCTTATGAATTATGGCCCTCGTGTTGTTCCTGTTGCTGCGCCTCTCCAGTCTGTTTCTAACAGACCTGCTAGTGTGTATCAACGCTATGTCGATGAGATTCCAAGATACCGCAGTGGGACAGGGACCTACCTTCCAAATCCTAAGGTTTCTGTAAGGGACCGCCATACTTCAAGTACAAGAAGGGGGAGTTTCAATTATGACAGAAATGACCACCATGGTGATAGAGACGGGAACTGGAATGCCAACTCAAAGTCACGAGCTTCTGCACGCAACCACAGTCGCAGCCAAGCTGAGAAGCCAAATTCAAGAGTAGACCGTATGGCAGCTAGTGAGAGCCGTGCTGAGAGGCCATGGAGCTCACATAGACATGATTCATTCCCTTCATATCAATCTCAAAACGGTCCTATCCGCTCAAGTACTACACAGAGTGGTTCCACTAATGTGGCGTATGGCATGTATCCACTACCAGGCATGAATCCCGGTGGGGTGTCATCAAATGGACCTACCATGCCCCCTCTTGTCATGCTATATCCTTATGATCATAATGCTGGCTATGGGCCACCACCTGCCGAACAGCTGGAGTTTGGTTCTCTTGGACCAGTGGGTTTCTCAGGTTTGAATGAAGTTTCACAGTTAAATGAGGGAAGTCGGATGGGTGGAGTATTCGAGGAACAAAGATTTCACGGTGGCTCAACTCAACGATCGTCACCTGATCAGCCTTCCTCACCACACATCCAAAGGGGAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004652 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006396 GO:0006399 GO:0006401 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016074 GO:0016075 GO:0016077 GO:0016078 GO:0016740 GO:0016772 GO:0016779 GO:0019439 GO:0031123 GO:0031499 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0043021 GO:0043023 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043629 GO:0043630 GO:0043631 GO:0043632 GO:0043633 GO:0043634 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044877 GO:0046483 GO:0046700 GO:0070013 GO:0070566 GO:0071025 GO:0071027 GO:0071029 GO:0071035 GO:0071046 GO:0071704 GO:0090304 GO:1901360 GO:1901361 GO:1901575 GO:1990817

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NTP_transf_2

Protein Analysis

1350

Amino Acids

149.22

Weight (kDa)

6.04

Isoelectric Point (pI)

51.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MTPAP-like_central	PF22600	44 - 164	1.4e-09	Poly(A) RNA polymerase, mitochondrial-like, central palm domain
PAP-OAS1	PF26180	177 - 369	8.5e-93	PAP/OAS1 substrate-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008684)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61690 AT3G61690 AT3G61690
fragaria_vesca	FvH4_7g16250 FvH4_7g16250 FvH4_7g16250 FvH4_7g16250
malus_domestica	MD01G1079200.v1.1 MD07G1148100.v1.1
prunus_persica	Prupe.2G186200_v2.0.a1 Prupe.2G186200_v2.0.a1
pyrus_communis	pycom01g10750 pycom07g14710
rosa_chinensis	RchiOBHm_Chr1g0359271
rosa_laevigata	RLG00000027887
rosa_multiflora	Rmu_ssc0000135.1_g000035
rosa_roxburghii	Rroxscaffold_4G00297170
rosa_rugosa	Rorug01G0269000
rosa_samantha	Rh1AG283000 Rh1BG249200 Rh1CG267000 Rh1DG278100
rosa_wichuraiana	Rw1G025120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2301
AarI	CACCTGC	1 cut(s)	3877
Acc36I	ACCTGC	2 cut(s)	3376, 3877
AccB1I	GGYRCC	1 cut(s)	3220
AccB7I	CCANNNNNTGG	2 cut(s)	35, 1595
AccBSI	CCGCTC	1 cut(s)	3714
AccI	GTMKAC	3 cut(s)	462, 2442, 3615
AclWI	GGATC	7 cut(s)	938, 1074, 1691, 2211, 2224, 2542, 2806
AcoI	YGGCCR	2 cut(s)	1038, 2478
AcsI	RAATTY	6 cut(s)	386, 1915, 2011, 3057, 3148, 3604
AcuI	CTGAAG	8 cut(s)	236, 286, 441, 1671, 1818, 2142, 2943, 3051
AdeI	CACNNNGTG	2 cut(s)	1286, 3731
AfaI	GTAC	3 cut(s)	1789, 3478, 3721
AflII	CTTAAG	2 cut(s)	760, 1216
AflIII	ACRYGT	1 cut(s)	1447
AhlI	ACTAGT	2 cut(s)	2222, 2489
AjiI	CACGTC	1 cut(s)	2846
AjuI	GAANNNNNNNTTGG	2 cut(s)	1936, 1968
AleI	CACNNNNGTG	2 cut(s)	3519, 3743
AloI	GAACNNNNNNTCC	4 cut(s)	2889, 2921, 3008, 3040
Alw21I	GWGCWC	3 cut(s)	497, 1447, 3662
Alw26I	GTCTC	2 cut(s)	3262, 3522
Alw44I	GTGCAC	2 cut(s)	493, 1443
AlwI	GGATC	7 cut(s)	938, 1074, 1691, 2211, 2224, 2542, 2806
ApaI	GGGCCC	2 cut(s)	337, 1588
ApaLI	GTGCAC	2 cut(s)	493, 1443
ApeKI	GCWGC	7 cut(s)	202, 1877, 2330, 2585, 3338, 3585, 3626
ApoI	RAATTY	6 cut(s)	386, 1915, 2011, 3057, 3148, 3604
ArsI	GACNNNNNNTTYG	2 cut(s)	301, 333
Asp700I	GAANNNNTTC	3 cut(s)	221, 849, 1803
AspLEI	GCGC	4 cut(s)	177, 608, 2330, 3343
AsuC2I	CCSGG	2 cut(s)	2772, 3783
AsuHPI	GGTGA	7 cut(s)	602, 1274, 2067, 3201, 3533, 4002, 4020
AsuII	TTCGAA	2 cut(s)	320, 1077
AxyI	CCTNAGG	1 cut(s)	3444
BaeGI	GKGCMC	8 cut(s)	25, 258, 337, 497, 777, 1447, 1588, 3225
BaeI	ACNNNNGTAYC	2 cut(s)	3400, 3433
BalI	TGGCCA	1 cut(s)	1040
BamHI	GGATCC	1 cut(s)	2216
BanI	GGYRCC	1 cut(s)	3220
BanII	GRGCYC	3 cut(s)	337, 1588, 3662
BauI	CACGAG	2 cut(s)	3321, 3558
Bbv12I	GWGCWC	3 cut(s)	497, 1447, 3662
BbvCI	CCTCAGC	1 cut(s)	2290
BbvI	GCAGC	7 cut(s)	214, 1889, 2317, 2572, 3325, 3597, 3638
BceAI	ACGGC	3 cut(s)	144, 170, 3624
BcgI	CGANNNNNNTGC	2 cut(s)	1424, 1458
BciVI	GTATCC	2 cut(s)	996, 3771
BclI	TGATCA	5 cut(s)	1408, 2233, 3040, 3841, 4015
BcnI	CCSGG	2 cut(s)	2772, 3783
BcoDI	GTCTC	2 cut(s)	3262, 3522
BcuI	ACTAGT	2 cut(s)	2222, 2489
BfaI	CTAG	9 cut(s)	602, 716, 1347, 1527, 2223, 2466, 2490, 3372, 3630
BfmI	CTRYAG	1 cut(s)	1875
BfoI	RGCGCY	2 cut(s)	609, 2331
BfrI	CTTAAG	2 cut(s)	760, 1216
BfuAI	ACCTGC	2 cut(s)	3376, 3877
BfuI	GTATCC	2 cut(s)	996, 3771
BglII	AGATCT	2 cut(s)	1682, 1849
BmcAI	AGTACT	2 cut(s)	1789, 3721
BmgBI	CACGTC	1 cut(s)	2846
BmrI	ACTGGG	2 cut(s)	748, 2816
BmsI	GCATC	6 cut(s)	72, 847, 1126, 1821, 1877, 2802
BmuI	ACTGGG	2 cut(s)	748, 2816
BplI	GAGNNNNNCTC	2 cut(s)	2156, 2188
BpmI	CTGGAG	4 cut(s)	377, 2886, 3332, 3902
Bpu10I	CCTNAGC	2 cut(s)	1533, 2290
Bpu14I	TTCGAA	2 cut(s)	320, 1077
BpuMI	CCSGG	2 cut(s)	2772, 3783
BsaAI	YACGTR	1 cut(s)	1145
BsaBI	GATNNNNATC	2 cut(s)	1681, 2679
BsaI	GGTCTC	1 cut(s)	3262
BsaWI	WCCGGW	1 cut(s)	1925
BsaXI	ACNNNNNCTCC	2 cut(s)	2884, 2914
Bse1I	ACTGG	6 cut(s)	743, 2822, 2903, 3349, 3542, 3902
Bse21I	CCTNAGG	1 cut(s)	3444
Bse8I	GATNNNNATC	2 cut(s)	1681, 2679
BseGI	GGATG	8 cut(s)	1721, 1777, 1836, 2308, 3114, 3262, 3960, 4035
BseJI	GATNNNNATC	2 cut(s)	1681, 2679
BseNI	ACTGG	6 cut(s)	743, 2822, 2903, 3349, 3542, 3902
BseRI	GAGGAG	6 cut(s)	134, 380, 527, 801, 1856, 2503
BseSI	GKGCMC	8 cut(s)	25, 258, 337, 497, 777, 1447, 1588, 3225
BseXI	GCAGC	7 cut(s)	214, 1889, 2317, 2572, 3325, 3597, 3638
BseYI	CCCAGC	2 cut(s)	481, 2941
BsgI	GTGCAG	3 cut(s)	221, 888, 3552
Bsh1285I	CGRYCG	1 cut(s)	4007
BshNI	GGYRCC	1 cut(s)	3220
BsiEI	CGRYCG	1 cut(s)	4007
BsiHKAI	GWGCWC	3 cut(s)	497, 1447, 3662
BsiSI	CCGG	3 cut(s)	1926, 2771, 3783
BslFI	GGGAC	6 cut(s)	1834, 2347, 2910, 3433, 3439, 3473
BsmAI	GTCTC	2 cut(s)	3262, 3522
BsmBI	CGTCTC	1 cut(s)	3522
BsmFI	GGGAC	6 cut(s)	1834, 2347, 2910, 3433, 3439, 3473
BsmI	GAATGC	4 cut(s)	147, 385, 3184, 3547
Bso31I	GGTCTC	1 cut(s)	3262
Bsp119I	TTCGAA	2 cut(s)	320, 1077
Bsp120I	GGGCCC	2 cut(s)	333, 1584
Bsp1286I	GDGCHC	9 cut(s)	25, 258, 337, 497, 777, 1447, 1588, 3225, 3662
Bsp19I	CCATGG	4 cut(s)	613, 3069, 3517, 3653
BspHI	TCATGA	1 cut(s)	2236
BspMAI	CTGCAG	1 cut(s)	1879
BspMI	ACCTGC	2 cut(s)	3376, 3877
BspPI	GGATC	7 cut(s)	938, 1074, 1691, 2211, 2224, 2542, 2806
BspQI	GCTCTTC	1 cut(s)	165
BspT104I	TTCGAA	2 cut(s)	320, 1077
BspT107I	GGYRCC	1 cut(s)	3220
BspTI	CTTAAG	2 cut(s)	760, 1216
BspTNI	GGTCTC	1 cut(s)	3262
BsrBI	CCGCTC	1 cut(s)	3714
BsrI	ACTGG	6 cut(s)	743, 2822, 2903, 3349, 3542, 3902
BssNAI	GTATAC	1 cut(s)	2443
BssSI	CACGAG	2 cut(s)	3321, 3558
BssT1I	CCWWGG	8 cut(s)	111, 613, 967, 2033, 3069, 3251, 3517, 3653
Bst1107I	GTATAC	1 cut(s)	2443
Bst2BI	CACGAG	2 cut(s)	3321, 3558
Bst6I	CTCTTC	2 cut(s)	165, 792
BstAFI	CTTAAG	2 cut(s)	760, 1216
BstAPI	GCANNNNNTGC	2 cut(s)	875, 1874
BstBAI	YACGTR	1 cut(s)	1145
BstBI	TTCGAA	2 cut(s)	320, 1077
BstC8I	GCNNGC	7 cut(s)	30, 145, 1038, 1669, 3136, 3571, 3853
BstDSI	CCRYGG	4 cut(s)	613, 3069, 3517, 3653
BstENI	CCTNNNNNAGG	1 cut(s)	512
BstF5I	GGATG	8 cut(s)	1721, 1777, 1836, 2308, 3114, 3262, 3960, 4035
BstH2I	RGCGCY	2 cut(s)	609, 2331
BstHHI	GCGC	4 cut(s)	177, 608, 2330, 3343
BstMAI	GTCTC	2 cut(s)	3262, 3522
BstMCI	CGRYCG	1 cut(s)	4007
BstMWI	GCNNNNNNNGC	7 cut(s)	29, 228, 866, 875, 1025, 1874, 2879
BstNSI	RCATGY	4 cut(s)	1451, 2002, 2753, 3760
BstSFI	CTRYAG	1 cut(s)	1875
BstSLI	GKGCMC	8 cut(s)	25, 258, 337, 497, 777, 1447, 1588, 3225
BstV1I	GCAGC	7 cut(s)	214, 1889, 2317, 2572, 3325, 3597, 3638
BstX2I	RGATCY	4 cut(s)	1066, 1682, 1849, 2216
BstXI	CCANNNNNNTGG	3 cut(s)	1190, 1624, 3745
BstYI	RGATCY	4 cut(s)	1066, 1682, 1849, 2216
BstZ17I	GTATAC	1 cut(s)	2443
Bsu36I	CCTNAGG	1 cut(s)	3444
BsuI	GTATCC	2 cut(s)	996, 3771
BtgI	CCRYGG	4 cut(s)	613, 3069, 3517, 3653
BtgZI	GCGATG	1 cut(s)	118
BtrI	CACGTC	1 cut(s)	2846
BtsCI	GGATG	8 cut(s)	1721, 1777, 1836, 2308, 3114, 3262, 3960, 4035
BtsI	GCAGTG	3 cut(s)	876, 1015, 3421
BtsIMutI	CAGTG	6 cut(s)	876, 1015, 1342, 3130, 3421, 3909
BveI	ACCTGC	2 cut(s)	3376, 3877
Cac8I	GCNNGC	7 cut(s)	30, 145, 1038, 1669, 3136, 3571, 3853
CciI	TCATGA	1 cut(s)	2236
CfoI	GCGC	4 cut(s)	177, 608, 2330, 3343
CsiI	ACCWGGT	1 cut(s)	2137
Csp6I	GTAC	3 cut(s)	1788, 3477, 3720
CviQI	GTAC	3 cut(s)	1788, 3477, 3720
DraIII	CACNNNGTG	2 cut(s)	1286, 3731
EaeI	YGGCCR	2 cut(s)	1038, 2478
Eam1104I	CTCTTC	2 cut(s)	165, 792
EarI	CTCTTC	2 cut(s)	165, 792
EciI	GGCGGA	2 cut(s)	131, 872
Ecl136II	GAGCTC	1 cut(s)	3660
Eco130I	CCWWGG	8 cut(s)	111, 613, 967, 2033, 3069, 3251, 3517, 3653
Eco147I	AGGCCT	1 cut(s)	575
Eco24I	GRGCYC	3 cut(s)	337, 1588, 3662
Eco31I	GGTCTC	1 cut(s)	3262
Eco53kI	GAGCTC	1 cut(s)	3660
Eco57I	CTGAAG	8 cut(s)	236, 286, 441, 1671, 1818, 2142, 2943, 3051
Eco81I	CCTNAGG	1 cut(s)	3444
EcoICRI	GAGCTC	1 cut(s)	3660
EcoNI	CCTNNNNNAGG	1 cut(s)	512
EcoO109I	RGGNCCY	7 cut(s)	767, 1401, 1584, 1585, 2834, 2897, 3426
EcoT14I	CCWWGG	8 cut(s)	111, 613, 967, 2033, 3069, 3251, 3517, 3653
EcoT22I	ATGCAT	2 cut(s)	2052, 2884
EcoT38I	GRGCYC	3 cut(s)	337, 1588, 3662
ErhI	CCWWGG	8 cut(s)	111, 613, 967, 2033, 3069, 3251, 3517, 3653
Esp3I	CGTCTC	1 cut(s)	3522
FalI	AAGNNNNNCTT	2 cut(s)	837, 869
FaqI	GGGAC	6 cut(s)	1834, 2347, 2910, 3433, 3439, 3473
FauNDI	CATATG	1 cut(s)	2614
FbaI	TGATCA	5 cut(s)	1408, 2233, 3040, 3841, 4015
FblI	GTMKAC	3 cut(s)	462, 2442, 3615
FokI	GGATG	8 cut(s)	1708, 1784, 1843, 2295, 3101, 3269, 3967, 4022
FriOI	GRGCYC	3 cut(s)	337, 1588, 3662
FspBI	CTAG	9 cut(s)	602, 716, 1347, 1527, 2223, 2466, 2490, 3372, 3630
GlaI	GCGC	4 cut(s)	176, 607, 2329, 3342
GsaI	CCCAGC	2 cut(s)	485, 2945
GsuI	CTGGAG	4 cut(s)	377, 2886, 3332, 3902
HaeII	RGCGCY	2 cut(s)	609, 2331
HapII	CCGG	3 cut(s)	1926, 2771, 3783
HhaI	GCGC	4 cut(s)	177, 608, 2330, 3343
Hin6I	GCGC	4 cut(s)	175, 606, 2328, 3341
HinP1I	GCGC	4 cut(s)	175, 606, 2328, 3341
HincII	GTYRAC	5 cut(s)	1858, 2109, 2286, 2559, 2595
HindII	GTYRAC	5 cut(s)	1858, 2109, 2286, 2559, 2595
HindIII	AAGCTT	1 cut(s)	912
HpaI	GTTAAC	1 cut(s)	1858
HpaII	CCGG	3 cut(s)	1926, 2771, 3783
HphI	GGTGA	7 cut(s)	602, 1274, 2067, 3201, 3533, 4002, 4020
HpyCH4IV	ACGT	3 cut(s)	973, 1144, 2845
HpyF10VI	GCNNNNNNNGC	7 cut(s)	29, 228, 866, 875, 1025, 1874, 2879
HpySE526I	ACGT	3 cut(s)	973, 1144, 2845
HspAI	GCGC	4 cut(s)	175, 606, 2328, 3341
Ksp22I	TGATCA	5 cut(s)	1408, 2233, 3040, 3841, 4015
KspAI	GTTAAC	1 cut(s)	1858
LguI	GCTCTTC	1 cut(s)	165
LmnI	GCTCC	4 cut(s)	1843, 2605, 3088, 3657
Lsp1109I	GCAGC	7 cut(s)	214, 1889, 2317, 2572, 3325, 3597, 3638
LweI	GCATC	6 cut(s)	72, 847, 1126, 1821, 1877, 2802
MabI	ACCWGGT	1 cut(s)	2137
MaeI	CTAG	9 cut(s)	602, 716, 1347, 1527, 2223, 2466, 2490, 3372, 3630
MaeII	ACGT	3 cut(s)	973, 1144, 2845
MaeIII	GTNAC	9 cut(s)	796, 831, 989, 1351, 2073, 2914, 3125, 3555, 4008
MbiI	CCGCTC	1 cut(s)	3714
MflI	RGATCY	4 cut(s)	1066, 1682, 1849, 2216
MhlI	GDGCHC	9 cut(s)	25, 258, 337, 497, 777, 1447, 1588, 3225, 3662
MlsI	TGGCCA	1 cut(s)	1040
MluNI	TGGCCA	1 cut(s)	1040
MlyI	GAGTC	3 cut(s)	304, 320, 2038
MmeI	TCCRAC	2 cut(s)	1605, 3932
Mox20I	TGGCCA	1 cut(s)	1040
Mph1103I	ATGCAT	2 cut(s)	2052, 2884
MroXI	GAANNNNTTC	3 cut(s)	221, 849, 1803
MscI	TGGCCA	1 cut(s)	1040
MseI	TTAA	9 cut(s)	474, 761, 933, 1217, 1485, 1857, 2081, 3053, 3938
MslI	CAYNNNNRTG	8 cut(s)	933, 1119, 1188, 2241, 2403, 3519, 3669, 3743
Msp20I	TGGCCA	1 cut(s)	1040
MspA1I	CMGCKG	6 cut(s)	205, 481, 1691, 2294, 3029, 3880
MspCI	CTTAAG	2 cut(s)	760, 1216
MspI	CCGG	3 cut(s)	1926, 2771, 3783
Mva1269I	GAATGC	4 cut(s)	147, 385, 3184, 3547
MwoI	GCNNNNNNNGC	7 cut(s)	29, 228, 866, 875, 1025, 1874, 2879
NciI	CCSGG	2 cut(s)	2772, 3783
NcoI	CCATGG	4 cut(s)	613, 3069, 3517, 3653
NdeI	CATATG	1 cut(s)	2614
NmeAIII	GCCGAG	2 cut(s)	2402, 3160
NmuCI	GTSAC	4 cut(s)	2073, 3125, 3555, 4008
NsiI	ATGCAT	2 cut(s)	2052, 2884
NspI	RCATGY	4 cut(s)	1451, 2002, 2753, 3760
NspV	TTCGAA	2 cut(s)	320, 1077
OliI	CACNNNNGTG	2 cut(s)	3519, 3743
PagI	TCATGA	1 cut(s)	2236
PaqCI	CACCTGC	1 cut(s)	3877
PceI	AGGCCT	1 cut(s)	575
PciI	ACATGT	1 cut(s)	1447
PciSI	GCTCTTC	1 cut(s)	165
PctI	GAATGC	4 cut(s)	147, 385, 3184, 3547
PdmI	GAANNNNTTC	3 cut(s)	221, 849, 1803
PflMI	CCANNNNNTGG	2 cut(s)	35, 1595
Ple19I	CGATCG	1 cut(s)	4007
PleI	GAGTC	3 cut(s)	304, 320, 2037
PpsI	GAGTC	3 cut(s)	304, 320, 2037
Ppu21I	YACGTR	1 cut(s)	1145
PpuMI	RGGWCCY	3 cut(s)	767, 2897, 3426
PscI	ACATGT	1 cut(s)	1447
PsiI	TTATAA	1 cut(s)	2301
Psp124BI	GAGCTC	1 cut(s)	3662
Psp5II	RGGWCCY	3 cut(s)	767, 2897, 3426
PspFI	CCCAGC	2 cut(s)	481, 2941
PspOMI	GGGCCC	2 cut(s)	333, 1584
PspPPI	RGGWCCY	3 cut(s)	767, 2897, 3426
PstI	CTGCAG	1 cut(s)	1879
PsuI	RGATCY	4 cut(s)	1066, 1682, 1849, 2216
PvuI	CGATCG	1 cut(s)	4007
PvuII	CAGCTG	4 cut(s)	481, 1691, 2294, 3880
RsaI	GTAC	3 cut(s)	1789, 3478, 3721
RsaNI	GTAC	3 cut(s)	1788, 3477, 3720
RseI	CAYNNNNRTG	8 cut(s)	933, 1119, 1188, 2241, 2403, 3519, 3669, 3743
SacI	GAGCTC	1 cut(s)	3662
SapI	GCTCTTC	1 cut(s)	165
SaqAI	TTAA	9 cut(s)	474, 761, 933, 1217, 1485, 1857, 2081, 3053, 3938
ScaI	AGTACT	2 cut(s)	1789, 3721
SchI	GAGTC	3 cut(s)	304, 320, 2038
SduI	GDGCHC	9 cut(s)	25, 258, 337, 497, 777, 1447, 1588, 3225, 3662
SexAI	ACCWGGT	1 cut(s)	2137
SfaNI	GCATC	6 cut(s)	72, 847, 1126, 1821, 1877, 2802
SfcI	CTRYAG	1 cut(s)	1875
SfuI	TTCGAA	2 cut(s)	320, 1077
SmiMI	CAYNNNNRTG	8 cut(s)	933, 1119, 1188, 2241, 2403, 3519, 3669, 3743
SpeI	ACTAGT	2 cut(s)	2222, 2489
SseBI	AGGCCT	1 cut(s)	575
SspMI	CTAG	9 cut(s)	602, 716, 1347, 1527, 2223, 2466, 2490, 3372, 3630
SstI	GAGCTC	1 cut(s)	3662
StuI	AGGCCT	1 cut(s)	575
StyI	CCWWGG	8 cut(s)	111, 613, 967, 2033, 3069, 3251, 3517, 3653
TaiI	ACGT	3 cut(s)	976, 1147, 2848
TaqII	GACCGA	1 cut(s)	2469
TatI	WGTACW	3 cut(s)	1787, 3476, 3719
TauI	GCSGC	3 cut(s)	74, 208, 1224
Tru1I	TTAA	9 cut(s)	474, 761, 933, 1217, 1485, 1857, 2081, 3053, 3938
Tru9I	TTAA	9 cut(s)	474, 761, 933, 1217, 1485, 1857, 2081, 3053, 3938
TscAI	CASTG	6 cut(s)	876, 1015, 1342, 3130, 3421, 3909
TseFI	GTSAC	4 cut(s)	2073, 3125, 3555, 4008
TseI	GCWGC	7 cut(s)	202, 1877, 2330, 2585, 3338, 3585, 3626
Tsp45I	GTSAC	4 cut(s)	2073, 3125, 3555, 4008
TspGWI	ACGGA	4 cut(s)	67, 1345, 1797, 2061
TspRI	CASTG	6 cut(s)	876, 1015, 1342, 3130, 3421, 3909
Van91I	CCANNNNNTGG	2 cut(s)	35, 1595
Vha464I	CTTAAG	2 cut(s)	760, 1216
VneI	GTGCAC	2 cut(s)	493, 1443
XagI	CCTNNNNNAGG	1 cut(s)	512
XapI	RAATTY	6 cut(s)	386, 1915, 2011, 3057, 3148, 3604
XbaI	TCTAGA	1 cut(s)	715
XceI	RCATGY	4 cut(s)	1451, 2002, 2753, 3760
XcmI	CCANNNNNNNNNTGG	2 cut(s)	634, 1775
XmiI	GTMKAC	3 cut(s)	462, 2442, 3615
XmnI	GAANNNNTTC	3 cut(s)	221, 849, 1803
XspI	CTAG	9 cut(s)	602, 716, 1347, 1527, 2223, 2466, 2490, 3372, 3630
ZrmI	AGTACT	2 cut(s)	1789, 3721
Zsp2I	ATGCAT	2 cut(s)	2052, 2884

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.