Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0008684

Physical Location & Seq

Genomic Coordinates Forward (+)

50003379 .. 50011680

Gene Structure 8302 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG278100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3699 bp

ATGCTGGAGAATGAGGAGAAGAATGAGAATGCTGAATTTCGTGTCAAAGAGGTTCAATACATTCAAGCTGAAGTAAAGATAATCAAGTGCCTTGTGGAAAACATTGTAGTAGACATATCCCTTAATCAGCTGGGAGGCTTGTGCACCCTTTGTTTCCTTGAGGAGGTCGATCATCTCATAAATCAAAATCATTTGTTCAAGCGTAGTATTATACTGATAAAGGCCTGGTGTTATTATGAGAGCCGAATACTAGGCGCTCACCATGGACTTATCTCCACCTACGCTTTGGAAACATTGGTTTTATACATTTTTCATGTTTTCAACAACTCCTTTGCTGGACCACTTGAGGTCTTGTATCGCTTTCTAGAGTTCTTTAGTAAGTTTGACTGGGAGAACTTTTGTGTTAGCTTATGGGGTCCTGTGCCCATTAGTTCTCTTCCAGATGTAACTGCCGAACCTCCTCGAAAGGATGGTGGAGAGTTACTACTAAGCAAAGTGTTTCTTGATGCGTGTAGCGCAGTGTATGCTGTCCGCCCTGGCGGTCAAGAAAATCAGGGCCAAGCTTTTGTTTCCAAACATTTTAATGTTATTGATCCTTTGAGAATCAACAACAACCTTGGACGTAGTGTTAGTAAAGGTAACTTCTTTAGGATACGCAGTGCATTTGCATTTGGGGCTAAAAGGCTGGCCAGGTTGCTTGATTGTTCAAAGGAGGATCTATGTTTCGAAGTAAATCAGTTTTTTCTCAACACTTGGGATAGACATGGAAGTGGTCATCGACCTGATGCACCACGTAATGATCTTAGGCACTTGCGACTTTCAAATGCAGACCACTTACATGGGTCTGAGAATCGCAGGAACAACTTAAGCGGCAAAAAAAACGAAAGTTCCTCTGGTCGAGATACTCAAGGTGAGGGAAAACATGGTTCACTTAGTGTTTCCTCTCAGCATGGTAGTTATCCTATAGAAAGCATATCACGGAACAGTGTTTTTTCTAGTGTAACTGATGGTCAAAGCCAAAAGAATCATGTGAACATGAACATTGGGAGGGCCTCTGATCAGATTAGAAAGGAAATCAATCCCGACCTGGGTGCACATGTGGATAAAGGTCAGAGAAAACCGGATAGCTTGGTTAATGACCTTCACGGGAGGTTTCTTTTTGCAAGGACACGCTCTAGTCCTGAGCTTACTGATACATATAGTGAAGTTCCCTCTCAAGGTCGGCGGAATAGGGCCCCAGAGAGTGGGAAAAGCCAAACTTATTCCACGAGGTTGGATAATAGCAGGAGGAAGAACCTTGAGGCTGATAATTTAGCAAGCCACAGAATTAGATCTTCAGCTGATGATCCTTCATCTGCTAACCATATTCCATCCCATCAAAGCCTTGATGTTGTGGTTGATTCAAATAATAGCTACCAGGATGAATCTGGTTCGAGTACTGTTGCTGAAGATTTTCCGTCTATTTCGGGGACACAAGGGATGCACCAGGAGGAGCAAGATCTTGTTAACATGATGGCATCTTCTGCAGCTCATGGTTTCAATGGACAGGTTCATCTTCCCCTGAATTTGGGTTCCGGTCATTTACCATTTCCAATCTCATCTTCTGTTCTTGCTTCGATGGGATATGCTCAGAGGAATATGGGTGGCATGTTTCCCACAAATTTTCCCTTGATGGAGAGTCATTGGGGAACGAATATGCATTTTCCTCAAGGTGTTGTTCCGTCACCTTCTCATTATTTCCCTGGCATGGGGTTGACATCAAATCCTGAAGAATCGGTGGAACCTGGTAATGAAGATTTTGGTTCTGTGGAAATGAACTCAAGTGAAACTGATCATGATTTCTGGAACAACCAGGAGAGGGGATCTACTAGTGGATTTGATCATGATAATGGAGGTTTGGAAATGCTTGAGGCAGATGATAGGCAACAGTCAACCTCAGCTGGTTATAACTCCCGTCCTTCATCTCGGATAGGCGCTGCTGTAAGTTCTATGCGAGTTCAACAAAAGTCCCCTAAAGAAAGCCGAGATTCAACGAGAGAAGATCATGTCGATGATTTTCAGTATCAAGATAACCGAGGAAATGAGGTATACTTTGATGACCGAGTGAGTTCTAGGTCATTGTCGGCCAATTATACTAGTTCTGCAAGAAGCAAGACCTCCTCTGAGAGTTCTTGGGAAGGATCATCAGCAAAAGTGTCAAAGTCAACAAGGGAAAAACGGGGCAGAAAAGCTGCTCTGTCAACAGCTCCATCTACCTCATATGGGAAAGGTAAGAGTGTGTCTGAACATTCTTCTACTCAGGCAGATGATGAAAACAAAGATTGGAATCTGCCAACAACTTTAGGTGCTGAAATGGTAGAAAGAAGCACACTATCTCAACCTGTTGCTTCCTTGCATGTTCCAAGACATCAAATGCCGGGTTTTGAACCATCTCAAACAAGTGGATCAGATTCGCTGATGCCTTTCCCAGTTCTCTTAGGGCCTGGCTCACGACAGAGAGCTACAAATGATTCTGGTGCTACCTACGCATTTTATCCTACAGGACCTCCAGTTCCATTTGTTACAATGCTACCATATTACAATTTCCCCACAGAGGCAGGAACTTCAGATGTATCAAGCCAATTCAGTAGGGAAGATGGACCTGAAAGTGATTCTGGTCAGAACTTTGATTCAGCTGAAGGAATTGATCAACCTCAGTTAAGAATTTCTAACTCCATGGGAAGGGTTGCTCCTATTGAGCGTTCTGAGTATAAATCTGACATCCTTCACAGTGACTTTGCCAGCCATTATCAGAATTTGCAGTATGGACGGTTATGCCAAAATCCTCGGCATTCTCCACCTATGGTTTATCCTTCACCTGTTATGGTGCCCCCTGCCTACTTGCAAGGGCGATTTCCTTGGGATGGTCCTGGGAGACCTCTCTCAGCCAATATGAATCTCATCACTCAGCTTATGAATTATGGCCCTCGTGTTGTTCCTGTTGCTGCGCCTCTCCAGTCTGTTTCTAACAGACCTGCTAGTGTGTATCAACGCTATGTCGATGAGATTCCAAGATACCGCAGTGGGACAGGGACCTACCTTCCAAATCCTAAGGTTTCTGTAAGGGACCGCCATACTTCAAGTGCAAGAAGGGGGAGTTACAATTATGACAGAAATGACCACCATGGTGATAGAGAAGGGAACTGGAATGCCAACTCAAAGTCACGAGCTTCTGCACGCAACCACAGTCGCAGCCAAGCTGAGAAGCCAAATTCAAGAGTAGACCGTATGGCAGCTAGTGAGAGCCGTGCTGAGAGGCCATGGAGCTCACATAGACATGACTCATTCCCTTCATATCAATCTCAAAACGGTCCTATCCGCTCAAGTACTACACAGAGTGGTTCCACTAATGTGGCGTATGGCATGTATCCACTACCAGGCATGAATCCCGGTGGGGTCTCATCAAATGGACCTACCATGCCCCCTCTTGTCATGCTATATCCTTATGATCATAATACTGGCTATGGGCCACCACCTGCCGAACAGCTGGAGTTTGGTTCTCTTGGACCAGTGGGTTTCTCAGGTTTGAATGAAGTTTCACAGTTAAATGAGGGAAGTCGGATGGGTGGAGTATTCGAGGAACAAAGATTTCACGGTGGCTCAACTCAACGATCATCACCTGATCAGCCTTCCTCACCACACATCCAAAGGGGAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004652 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006396 GO:0006399 GO:0006401 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016074 GO:0016075 GO:0016077 GO:0016078 GO:0016740 GO:0016772 GO:0016779 GO:0019439 GO:0031123 GO:0031499 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0043021 GO:0043023 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043629 GO:0043630 GO:0043631 GO:0043632 GO:0043633 GO:0043634 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044877 GO:0046483 GO:0046700 GO:0070013 GO:0070566 GO:0071025 GO:0071027 GO:0071029 GO:0071035 GO:0071046 GO:0071704 GO:0090304 GO:1901360 GO:1901361 GO:1901575 GO:1990817

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NTP_transf_2

Protein Analysis

1232

Amino Acids

136.25

Weight (kDa)

6.32

Isoelectric Point (pI)

52.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAP-OAS1	PF26180	60 - 252	3.8e-93	PAP/OAS1 substrate-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0008684)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61690 AT3G61690 AT3G61690
fragaria_vesca	FvH4_7g16250 FvH4_7g16250 FvH4_7g16250 FvH4_7g16250
malus_domestica	MD01G1079200.v1.1 MD07G1148100.v1.1
prunus_persica	Prupe.2G186200_v2.0.a1 Prupe.2G186200_v2.0.a1
pyrus_communis	pycom01g10750 pycom07g14710
rosa_chinensis	RchiOBHm_Chr1g0359271
rosa_laevigata	RLG00000027887
rosa_multiflora	Rmu_ssc0000135.1_g000035
rosa_roxburghii	Rroxscaffold_4G00297170
rosa_rugosa	Rorug01G0269000
rosa_samantha	Rh1AG283000 Rh1BG249200 Rh1CG267000 Rh1DG278100
rosa_wichuraiana	Rw1G025120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1947
AarI	CACCTGC	1 cut(s)	3523
Acc36I	ACCTGC	2 cut(s)	3022, 3523
AccB1I	GGYRCC	1 cut(s)	2866
AccB7I	CCANNNNNTGG	1 cut(s)	1244
AccBSI	CCGCTC	1 cut(s)	3360
AccI	GTMKAC	3 cut(s)	111, 2088, 3261
AciI	CCGC	7 cut(s)	532, 540, 870, 1225, 3058, 3109, 3358
AclWI	GGATC	6 cut(s)	587, 723, 1340, 1870, 2188, 2452
AcoI	YGGCCR	2 cut(s)	687, 2124
AcsI	RAATTY	6 cut(s)	35, 1564, 1660, 2703, 2794, 3250
AcuI	CTGAAG	6 cut(s)	90, 1320, 1467, 1788, 2589, 2697
AdeI	CACNNNGTG	2 cut(s)	935, 3377
AfaI	GTAC	2 cut(s)	1438, 3367
AflII	CTTAAG	1 cut(s)	865
AflIII	ACRYGT	1 cut(s)	1096
AhlI	ACTAGT	2 cut(s)	1868, 2135
AjuI	GAANNNNNNNTTGG	2 cut(s)	1585, 1617
AleI	CACNNNNGTG	2 cut(s)	3165, 3389
AloI	GAACNNNNNNTCC	2 cut(s)	2535, 2567
Alw21I	GWGCWC	3 cut(s)	146, 1096, 3308
Alw26I	GTCTC	2 cut(s)	2908, 3442
Alw44I	GTGCAC	2 cut(s)	142, 1092
AlwI	GGATC	6 cut(s)	587, 723, 1340, 1870, 2188, 2452
ApaI	GGGCCC	1 cut(s)	1237
ApaLI	GTGCAC	2 cut(s)	142, 1092
ApeKI	GCWGC	6 cut(s)	1526, 1976, 2231, 2984, 3231, 3272
ApoI	RAATTY	6 cut(s)	35, 1564, 1660, 2703, 2794, 3250
Asp700I	GAANNNNTTC	1 cut(s)	1452
AspLEI	GCGC	4 cut(s)	257, 518, 1976, 2989
AsuC2I	CCSGG	2 cut(s)	2418, 3429
AsuHPI	GGTGA	7 cut(s)	251, 923, 1716, 2847, 3179, 3648, 3666
AsuII	TTCGAA	1 cut(s)	726
AxyI	CCTNAGG	1 cut(s)	3090
BaeGI	GKGCMC	5 cut(s)	146, 426, 1096, 1237, 2871
BaeI	ACNNNNGTAYC	2 cut(s)	3046, 3079
BalI	TGGCCA	1 cut(s)	689
BanI	GGYRCC	1 cut(s)	2866
BanII	GRGCYC	2 cut(s)	1237, 3308
BauI	CACGAG	3 cut(s)	1267, 2967, 3204
Bbv12I	GWGCWC	3 cut(s)	146, 1096, 3308
BbvCI	CCTCAGC	1 cut(s)	1936
BbvI	GCAGC	6 cut(s)	1538, 1963, 2218, 2971, 3243, 3284
BceAI	ACGGC	1 cut(s)	3270
BcgI	CGANNNNNNTGC	2 cut(s)	1073, 1107
BciVI	GTATCC	2 cut(s)	645, 3417
BclI	TGATCA	6 cut(s)	1057, 1831, 1879, 2686, 3487, 3661
BcnI	CCSGG	2 cut(s)	2418, 3429
BcoDI	GTCTC	2 cut(s)	2908, 3442
BcuI	ACTAGT	2 cut(s)	1868, 2135
BfaI	CTAG	9 cut(s)	251, 365, 996, 1176, 1869, 2112, 2136, 3018, 3276
BfmI	CTRYAG	3 cut(s)	963, 1524, 2538
BfoI	RGCGCY	2 cut(s)	258, 1977
BfrI	CTTAAG	1 cut(s)	865
BfuAI	ACCTGC	2 cut(s)	3022, 3523
BfuI	GTATCC	2 cut(s)	645, 3417
BglII	AGATCT	2 cut(s)	1331, 1498
BisI	GCNGC	7 cut(s)	871, 1527, 1977, 2232, 2985, 3232, 3273
BlsI	GCNGC	7 cut(s)	872, 1528, 1978, 2233, 2986, 3233, 3274
BmcAI	AGTACT	2 cut(s)	1438, 3367
BmiI	GGNNCC	9 cut(s)	417, 1235, 1236, 1573, 1782, 2868, 3073, 3107, 3382
BmrI	ACTGGG	2 cut(s)	397, 2462
BmsI	GCATC	5 cut(s)	496, 775, 1470, 1526, 2448
BmuI	ACTGGG	2 cut(s)	397, 2462
BpmI	CTGGAG	4 cut(s)	26, 2532, 2978, 3548
Bpu10I	CCTNAGC	2 cut(s)	1182, 1936
Bpu14I	TTCGAA	1 cut(s)	726
BpuEI	CTTGAG	9 cut(s)	179, 365, 891, 1200, 1319, 1692, 1804, 1928, 3346
BpuMI	CCSGG	2 cut(s)	2418, 3429
BsaAI	YACGTR	1 cut(s)	794
BsaBI	GATNNNNATC	1 cut(s)	2325
BsaI	GGTCTC	2 cut(s)	2908, 3442
BsaWI	WCCGGW	2 cut(s)	1120, 1574
BsaXI	ACNNNNNCTCC	2 cut(s)	2530, 2560
Bse1I	ACTGG	7 cut(s)	392, 2468, 2549, 2995, 3188, 3502, 3548
Bse21I	CCTNAGG	1 cut(s)	3090
Bse8I	GATNNNNATC	1 cut(s)	2325
BseGI	GGATG	8 cut(s)	475, 1370, 1426, 1485, 2760, 2908, 3606, 3681
BseJI	GATNNNNATC	1 cut(s)	2325
BseNI	ACTGG	7 cut(s)	392, 2468, 2549, 2995, 3188, 3502, 3548
BseRI	GAGGAG	5 cut(s)	29, 176, 450, 1505, 2149
BseSI	GKGCMC	5 cut(s)	146, 426, 1096, 1237, 2871
BseXI	GCAGC	6 cut(s)	1538, 1963, 2218, 2971, 3243, 3284
BseYI	CCCAGC	1 cut(s)	130
BsgI	GTGCAG	1 cut(s)	3198
BshNI	GGYRCC	1 cut(s)	2866
BsiHKAI	GWGCWC	3 cut(s)	146, 1096, 3308
BsiSI	CCGG	4 cut(s)	1121, 1575, 2417, 3429
BslFI	GGGAC	5 cut(s)	1483, 1993, 3079, 3085, 3119
BsmAI	GTCTC	2 cut(s)	2908, 3442
BsmFI	GGGAC	5 cut(s)	1483, 1993, 3079, 3085, 3119
BsmI	GAATGC	3 cut(s)	34, 2830, 3193
Bso31I	GGTCTC	2 cut(s)	2908, 3442
Bsp119I	TTCGAA	1 cut(s)	726
Bsp120I	GGGCCC	1 cut(s)	1233
Bsp1286I	GDGCHC	6 cut(s)	146, 426, 1096, 1237, 2871, 3308
Bsp19I	CCATGG	4 cut(s)	262, 2715, 3163, 3299
BspACI	CCGC	7 cut(s)	532, 540, 870, 1225, 3058, 3109, 3358
BspHI	TCATGA	2 cut(s)	1834, 1882
BspLI	GGNNCC	9 cut(s)	417, 1235, 1236, 1573, 1782, 2868, 3073, 3107, 3382
BspMAI	CTGCAG	1 cut(s)	1528
BspMI	ACCTGC	2 cut(s)	3022, 3523
BspPI	GGATC	6 cut(s)	587, 723, 1340, 1870, 2188, 2452
BspT104I	TTCGAA	1 cut(s)	726
BspT107I	GGYRCC	1 cut(s)	2866
BspTI	CTTAAG	1 cut(s)	865
BspTNI	GGTCTC	2 cut(s)	2908, 3442
BsrBI	CCGCTC	1 cut(s)	3360
BsrI	ACTGG	7 cut(s)	392, 2468, 2549, 2995, 3188, 3502, 3548
BssNAI	GTATAC	1 cut(s)	2089
BssSI	CACGAG	3 cut(s)	1267, 2967, 3204
BssT1I	CCWWGG	6 cut(s)	262, 616, 2715, 2897, 3163, 3299
Bst1107I	GTATAC	1 cut(s)	2089
Bst2BI	CACGAG	3 cut(s)	1267, 2967, 3204
Bst6I	CTCTTC	1 cut(s)	441
BstAFI	CTTAAG	1 cut(s)	865
BstAPI	GCANNNNNTGC	2 cut(s)	524, 1523
BstBAI	YACGTR	1 cut(s)	794
BstBI	TTCGAA	1 cut(s)	726
BstC8I	GCNNGC	4 cut(s)	687, 1318, 2782, 3217
BstDSI	CCRYGG	4 cut(s)	262, 2715, 3163, 3299
BstENI	CCTNNNNNAGG	1 cut(s)	161
BstF5I	GGATG	8 cut(s)	475, 1370, 1426, 1485, 2760, 2908, 3606, 3681
BstH2I	RGCGCY	2 cut(s)	258, 1977
BstHHI	GCGC	4 cut(s)	257, 518, 1976, 2989
BstMAI	GTCTC	2 cut(s)	2908, 3442
BstMWI	GCNNNNNNNGC	5 cut(s)	515, 524, 674, 1523, 2525
BstNSI	RCATGY	4 cut(s)	1100, 1651, 2399, 3406
BstSFI	CTRYAG	3 cut(s)	963, 1524, 2538
BstSLI	GKGCMC	5 cut(s)	146, 426, 1096, 1237, 2871
BstV1I	GCAGC	6 cut(s)	1538, 1963, 2218, 2971, 3243, 3284
BstX2I	RGATCY	4 cut(s)	715, 1331, 1498, 1862
BstXI	CCANNNNNNTGG	3 cut(s)	839, 1273, 3391
BstYI	RGATCY	4 cut(s)	715, 1331, 1498, 1862
BstZ17I	GTATAC	1 cut(s)	2089
Bsu36I	CCTNAGG	1 cut(s)	3090
BsuI	GTATCC	2 cut(s)	645, 3417
BtgI	CCRYGG	4 cut(s)	262, 2715, 3163, 3299
BtsCI	GGATG	8 cut(s)	475, 1370, 1426, 1485, 2760, 2908, 3606, 3681
BtsI	GCAGTG	3 cut(s)	525, 664, 3067
BtsIMutI	CAGTG	6 cut(s)	525, 664, 991, 2776, 3067, 3555
BveI	ACCTGC	2 cut(s)	3022, 3523
Cac8I	GCNNGC	4 cut(s)	687, 1318, 2782, 3217
CciI	TCATGA	2 cut(s)	1834, 1882
CfoI	GCGC	4 cut(s)	257, 518, 1976, 2989
CsiI	ACCWGGT	1 cut(s)	1783
Csp6I	GTAC	2 cut(s)	1437, 3366
CviQI	GTAC	2 cut(s)	1437, 3366
DraIII	CACNNNGTG	2 cut(s)	935, 3377
EaeI	YGGCCR	2 cut(s)	687, 2124
Eam1104I	CTCTTC	1 cut(s)	441
EarI	CTCTTC	1 cut(s)	441
EciI	GGCGGA	2 cut(s)	521, 1240
Ecl136II	GAGCTC	1 cut(s)	3306
Eco130I	CCWWGG	6 cut(s)	262, 616, 2715, 2897, 3163, 3299
Eco147I	AGGCCT	1 cut(s)	224
Eco24I	GRGCYC	2 cut(s)	1237, 3308
Eco31I	GGTCTC	2 cut(s)	2908, 3442
Eco53kI	GAGCTC	1 cut(s)	3306
Eco57I	CTGAAG	6 cut(s)	90, 1320, 1467, 1788, 2589, 2697
Eco81I	CCTNAGG	1 cut(s)	3090
EcoICRI	GAGCTC	1 cut(s)	3306
EcoNI	CCTNNNNNAGG	1 cut(s)	161
EcoO109I	RGGNCCY	7 cut(s)	416, 1050, 1233, 1234, 2480, 2543, 3072
EcoT14I	CCWWGG	6 cut(s)	262, 616, 2715, 2897, 3163, 3299
EcoT22I	ATGCAT	1 cut(s)	1701
EcoT38I	GRGCYC	2 cut(s)	1237, 3308
ErhI	CCWWGG	6 cut(s)	262, 616, 2715, 2897, 3163, 3299
FalI	AAGNNNNNCTT	4 cut(s)	486, 518, 1243, 1275
FaqI	GGGAC	5 cut(s)	1483, 1993, 3079, 3085, 3119
FauNDI	CATATG	1 cut(s)	2260
FbaI	TGATCA	6 cut(s)	1057, 1831, 1879, 2686, 3487, 3661
FblI	GTMKAC	3 cut(s)	111, 2088, 3261
Fnu4HI	GCNGC	7 cut(s)	871, 1527, 1977, 2232, 2985, 3232, 3273
FokI	GGATG	8 cut(s)	482, 1357, 1433, 1492, 2747, 2915, 3613, 3668
FriOI	GRGCYC	2 cut(s)	1237, 3308
Fsp4HI	GCNGC	7 cut(s)	871, 1527, 1977, 2232, 2985, 3232, 3273
FspBI	CTAG	9 cut(s)	251, 365, 996, 1176, 1869, 2112, 2136, 3018, 3276
GlaI	GCGC	4 cut(s)	256, 517, 1975, 2988
GluI	GCNGC	7 cut(s)	871, 1527, 1977, 2232, 2985, 3232, 3273
GsaI	CCCAGC	1 cut(s)	134
GsuI	CTGGAG	4 cut(s)	26, 2532, 2978, 3548
HaeII	RGCGCY	2 cut(s)	258, 1977
HapII	CCGG	4 cut(s)	1121, 1575, 2417, 3429
HhaI	GCGC	4 cut(s)	257, 518, 1976, 2989
Hin6I	GCGC	4 cut(s)	255, 516, 1974, 2987
HinP1I	GCGC	4 cut(s)	255, 516, 1974, 2987
HincII	GTYRAC	5 cut(s)	1507, 1755, 1932, 2205, 2241
HindII	GTYRAC	5 cut(s)	1507, 1755, 1932, 2205, 2241
HindIII	AAGCTT	1 cut(s)	561
HpaI	GTTAAC	1 cut(s)	1507
HpaII	CCGG	4 cut(s)	1121, 1575, 2417, 3429
HphI	GGTGA	7 cut(s)	251, 923, 1716, 2847, 3179, 3648, 3666
HpyCH4IV	ACGT	2 cut(s)	622, 793
HpyF10VI	GCNNNNNNNGC	5 cut(s)	515, 524, 674, 1523, 2525
HpySE526I	ACGT	2 cut(s)	622, 793
HspAI	GCGC	4 cut(s)	255, 516, 1974, 2987
Ksp22I	TGATCA	6 cut(s)	1057, 1831, 1879, 2686, 3487, 3661
KspAI	GTTAAC	1 cut(s)	1507
LmnI	GCTCC	4 cut(s)	1492, 2251, 2734, 3303
Lsp1109I	GCAGC	6 cut(s)	1538, 1963, 2218, 2971, 3243, 3284
LweI	GCATC	5 cut(s)	496, 775, 1470, 1526, 2448
MabI	ACCWGGT	1 cut(s)	1783
MaeI	CTAG	9 cut(s)	251, 365, 996, 1176, 1869, 2112, 2136, 3018, 3276
MaeII	ACGT	2 cut(s)	622, 793
MaeIII	GTNAC	9 cut(s)	445, 480, 638, 1000, 1722, 2560, 2771, 3137, 3201
MbiI	CCGCTC	1 cut(s)	3360
MflI	RGATCY	4 cut(s)	715, 1331, 1498, 1862
MhlI	GDGCHC	6 cut(s)	146, 426, 1096, 1237, 2871, 3308
MlsI	TGGCCA	1 cut(s)	689
MluNI	TGGCCA	1 cut(s)	689
MlyI	GAGTC	2 cut(s)	1687, 3314
MmeI	TCCRAC	2 cut(s)	1254, 3578
Mox20I	TGGCCA	1 cut(s)	689
Mph1103I	ATGCAT	1 cut(s)	1701
MroXI	GAANNNNTTC	1 cut(s)	1452
MscI	TGGCCA	1 cut(s)	689
MseI	TTAA	7 cut(s)	123, 582, 866, 1134, 1506, 2699, 3584
MslI	CAYNNNNRTG	8 cut(s)	582, 768, 837, 1887, 2049, 3165, 3315, 3389
Msp20I	TGGCCA	1 cut(s)	689
MspA1I	CMGCKG	5 cut(s)	130, 1340, 1940, 2675, 3526
MspCI	CTTAAG	1 cut(s)	865
MspI	CCGG	4 cut(s)	1121, 1575, 2417, 3429
Mva1269I	GAATGC	3 cut(s)	34, 2830, 3193
MwoI	GCNNNNNNNGC	5 cut(s)	515, 524, 674, 1523, 2525
NciI	CCSGG	2 cut(s)	2418, 3429
NcoI	CCATGG	4 cut(s)	262, 2715, 3163, 3299
NdeI	CATATG	1 cut(s)	2260
NlaIV	GGNNCC	9 cut(s)	417, 1235, 1236, 1573, 1782, 2868, 3073, 3107, 3382
NmeAIII	GCCGAG	2 cut(s)	2048, 2806
NmuCI	GTSAC	3 cut(s)	1722, 2771, 3201
NsiI	ATGCAT	1 cut(s)	1701
NspI	RCATGY	4 cut(s)	1100, 1651, 2399, 3406
NspV	TTCGAA	1 cut(s)	726
OliI	CACNNNNGTG	2 cut(s)	3165, 3389
PagI	TCATGA	2 cut(s)	1834, 1882
PaqCI	CACCTGC	1 cut(s)	3523
PceI	AGGCCT	1 cut(s)	224
PciI	ACATGT	1 cut(s)	1096
PctI	GAATGC	3 cut(s)	34, 2830, 3193
PdmI	GAANNNNTTC	1 cut(s)	1452
PflMI	CCANNNNNTGG	1 cut(s)	1244
PkrI	GCNGC	7 cut(s)	872, 1528, 1978, 2233, 2986, 3233, 3274
PleI	GAGTC	2 cut(s)	1686, 3314
PpsI	GAGTC	2 cut(s)	1686, 3314
Ppu21I	YACGTR	1 cut(s)	794
PpuMI	RGGWCCY	3 cut(s)	416, 2543, 3072
PscI	ACATGT	1 cut(s)	1096
PsiI	TTATAA	1 cut(s)	1947
Psp124BI	GAGCTC	1 cut(s)	3308
Psp5II	RGGWCCY	3 cut(s)	416, 2543, 3072
PspFI	CCCAGC	1 cut(s)	130
PspN4I	GGNNCC	9 cut(s)	417, 1235, 1236, 1573, 1782, 2868, 3073, 3107, 3382
PspOMI	GGGCCC	1 cut(s)	1233
PspPPI	RGGWCCY	3 cut(s)	416, 2543, 3072
PstI	CTGCAG	1 cut(s)	1528
PsuI	RGATCY	4 cut(s)	715, 1331, 1498, 1862
PvuII	CAGCTG	5 cut(s)	130, 1340, 1940, 2675, 3526
RsaI	GTAC	2 cut(s)	1438, 3367
RsaNI	GTAC	2 cut(s)	1437, 3366
RseI	CAYNNNNRTG	8 cut(s)	582, 768, 837, 1887, 2049, 3165, 3315, 3389
SacI	GAGCTC	1 cut(s)	3308
SaqAI	TTAA	7 cut(s)	123, 582, 866, 1134, 1506, 2699, 3584
SatI	GCNGC	7 cut(s)	871, 1527, 1977, 2232, 2985, 3232, 3273
ScaI	AGTACT	2 cut(s)	1438, 3367
SchI	GAGTC	2 cut(s)	1687, 3314
SduI	GDGCHC	6 cut(s)	146, 426, 1096, 1237, 2871, 3308
SexAI	ACCWGGT	1 cut(s)	1783
SfaNI	GCATC	5 cut(s)	496, 775, 1470, 1526, 2448
SfcI	CTRYAG	3 cut(s)	963, 1524, 2538
SfuI	TTCGAA	1 cut(s)	726
SmiMI	CAYNNNNRTG	8 cut(s)	582, 768, 837, 1887, 2049, 3165, 3315, 3389
SpeI	ACTAGT	2 cut(s)	1868, 2135
SseBI	AGGCCT	1 cut(s)	224
SsiI	CCGC	7 cut(s)	532, 540, 870, 1225, 3058, 3109, 3358
SspMI	CTAG	9 cut(s)	251, 365, 996, 1176, 1869, 2112, 2136, 3018, 3276
SstI	GAGCTC	1 cut(s)	3308
StuI	AGGCCT	1 cut(s)	224
StyI	CCWWGG	6 cut(s)	262, 616, 2715, 2897, 3163, 3299
TaiI	ACGT	2 cut(s)	625, 796
TaqII	GACCGA	1 cut(s)	2115
TatI	WGTACW	2 cut(s)	1436, 3365
TauI	GCSGC	1 cut(s)	873
Tru1I	TTAA	7 cut(s)	123, 582, 866, 1134, 1506, 2699, 3584
Tru9I	TTAA	7 cut(s)	123, 582, 866, 1134, 1506, 2699, 3584
TscAI	CASTG	6 cut(s)	525, 664, 991, 2776, 3067, 3555
TseFI	GTSAC	3 cut(s)	1722, 2771, 3201
TseI	GCWGC	6 cut(s)	1526, 1976, 2231, 2984, 3231, 3272
Tsp45I	GTSAC	3 cut(s)	1722, 2771, 3201
TspGWI	ACGGA	3 cut(s)	994, 1446, 1710
TspRI	CASTG	6 cut(s)	525, 664, 991, 2776, 3067, 3555
Van91I	CCANNNNNTGG	1 cut(s)	1244
Vha464I	CTTAAG	1 cut(s)	865
VneI	GTGCAC	2 cut(s)	142, 1092
XagI	CCTNNNNNAGG	1 cut(s)	161
XapI	RAATTY	6 cut(s)	35, 1564, 1660, 2703, 2794, 3250
XbaI	TCTAGA	1 cut(s)	364
XceI	RCATGY	4 cut(s)	1100, 1651, 2399, 3406
XcmI	CCANNNNNNNNNTGG	2 cut(s)	283, 1424
XmiI	GTMKAC	3 cut(s)	111, 2088, 3261
XmnI	GAANNNNTTC	1 cut(s)	1452
XspI	CTAG	9 cut(s)	251, 365, 996, 1176, 1869, 2112, 2136, 3018, 3276
ZrmI	AGTACT	2 cut(s)	1438, 3367
Zsp2I	ATGCAT	1 cut(s)	1701

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.