isoform X1
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G61690 AT3G61690 AT3G61690 |
| fragaria_vesca | FvH4_7g16250 FvH4_7g16250 FvH4_7g16250 FvH4_7g16250 |
| malus_domestica | MD01G1079200.v1.1 MD07G1148100.v1.1 |
| prunus_persica | Prupe.2G186200_v2.0.a1 Prupe.2G186200_v2.0.a1 |
| pyrus_communis | pycom01g10750 pycom07g14710 |
| rosa_chinensis | RchiOBHm_Chr1g0359271 |
| rosa_laevigata | RLG00000027887 |
| rosa_multiflora | Rmu_ssc0000135.1_g000035 |
| rosa_roxburghii | Rroxscaffold_4G00297170 |
| rosa_rugosa | Rorug01G0269000 |
| rosa_samantha | Rh1AG283000 Rh1BG249200 Rh1CG267000 Rh1DG278100 |
| rosa_wichuraiana | Rw1G025120 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 2304, 2925 |
| AarI | CACCTGC | 1 cut(s) | 3874 |
| Acc36I | ACCTGC | 2 cut(s) | 3441, 3874 |
| AccB1I | GGYRCC | 3 cut(s) | 2330, 2696, 3223 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 35 |
| AccBSI | CCGCTC | 1 cut(s) | 3714 |
| AccI | GTMKAC | 4 cut(s) | 462, 1579, 2442, 3234 |
| AccII | CGCG | 2 cut(s) | 393, 1221 |
| AciI | CCGC | 7 cut(s) | 116, 205, 391, 891, 3571, 3712, 3764 |
| AclI | AACGTT | 1 cut(s) | 3385 |
| AcoI | YGGCCR | 2 cut(s) | 1038, 3568 |
| AcuI | CTGAAG | 7 cut(s) | 281, 286, 982, 2145, 2249, 2277, 2937 |
| AcyI | GRCGYC | 1 cut(s) | 1403 |
| AdeI | CACNNNGTG | 3 cut(s) | 35, 1286, 3731 |
| AfaI | GTAC | 6 cut(s) | 255, 410, 774, 1255, 3061, 3456 |
| AflIII | ACRYGT | 1 cut(s) | 1526 |
| AleI | CACNNNNGTG | 1 cut(s) | 3519 |
| Alw21I | GWGCWC | 5 cut(s) | 497, 610, 787, 2829, 3662 |
| Alw26I | GTCTC | 5 cut(s) | 1159, 2024, 2551, 2936, 3265 |
| Alw44I | GTGCAC | 2 cut(s) | 493, 783 |
| Ama87I | CYCGRG | 1 cut(s) | 2322 |
| ApaI | GGGCCC | 1 cut(s) | 337 |
| ApaLI | GTGCAC | 2 cut(s) | 493, 783 |
| ApeKI | GCWGC | 5 cut(s) | 71, 2594, 2606, 3083, 3626 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 301, 333 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 221, 2262, 3296, 3399 |
| AspLEI | GCGC | 4 cut(s) | 177, 637, 1161, 2599 |
| AsuC2I | CCSGG | 1 cut(s) | 1330 |
| AsuII | TTCGAA | 1 cut(s) | 2117 |
| AvaI | CYCGRG | 1 cut(s) | 2322 |
| AvaII | GGWCC | 9 cut(s) | 689, 700, 767, 2834, 2990, 3426, 3704, 3803, 3896 |
| AxyI | CCTNAGG | 3 cut(s) | 2335, 3048, 3444 |
| BaeGI | GKGCMC | 5 cut(s) | 25, 337, 497, 787, 3228 |
| BalI | TGGCCA | 1 cut(s) | 1040 |
| BanI | GGYRCC | 3 cut(s) | 2330, 2696, 3223 |
| BanII | GRGCYC | 4 cut(s) | 337, 1594, 2222, 3662 |
| BauI | CACGAG | 1 cut(s) | 3558 |
| BbsI | GAAGAC | 3 cut(s) | 269, 2106, 2133 |
| Bbv12I | GWGCWC | 5 cut(s) | 497, 610, 787, 2829, 3662 |
| BbvI | GCAGC | 5 cut(s) | 58, 2593, 2606, 3070, 3638 |
| BceAI | ACGGC | 3 cut(s) | 170, 1778, 2584 |
| BciVI | GTATCC | 2 cut(s) | 3771, 3843 |
| BclI | TGATCA | 6 cut(s) | 520, 1408, 2188, 3040, 3511, 4012 |
| BcnI | CCSGG | 1 cut(s) | 1330 |
| BcoDI | GTCTC | 5 cut(s) | 1159, 2024, 2551, 2936, 3265 |
| BfaI | CTAG | 7 cut(s) | 1398, 1473, 1533, 1716, 2142, 2469, 3630 |
| BfmI | CTRYAG | 4 cut(s) | 129, 862, 1878, 3867 |
| BfoI | RGCGCY | 1 cut(s) | 2600 |
| BfuAI | ACCTGC | 2 cut(s) | 3441, 3874 |
| BfuI | GTATCC | 2 cut(s) | 3771, 3843 |
| BglII | AGATCT | 2 cut(s) | 1688, 1852 |
| BisI | GCNGC | 7 cut(s) | 72, 206, 2595, 2607, 3084, 3571, 3627 |
| BlsI | GCNGC | 7 cut(s) | 73, 207, 2596, 2608, 3085, 3572, 3628 |
| BmcAI | AGTACT | 1 cut(s) | 3061 |
| Bme18I | GGWCC | 9 cut(s) | 689, 700, 767, 2834, 2990, 3426, 3704, 3803, 3896 |
| BmeT110I | CYCGRG | 1 cut(s) | 2322 |
| BmrI | ACTGGG | 4 cut(s) | 611, 748, 3432, 3777 |
| BmuI | ACTGGG | 4 cut(s) | 611, 748, 3432, 3777 |
| BpiI | GAAGAC | 3 cut(s) | 269, 2106, 2133 |
| BpmI | CTGGAG | 4 cut(s) | 377, 2805, 2880, 3332 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1539 |
| Bpu14I | TTCGAA | 1 cut(s) | 2117 |
| BpuEI | CTTGAG | 4 cut(s) | 530, 716, 1557, 3899 |
| BpuMI | CCSGG | 1 cut(s) | 1330 |
| BsaBI | GATNNNNATC | 2 cut(s) | 2676, 3465 |
| BsaHI | GRCGYC | 1 cut(s) | 1403 |
| BsaI | GGTCTC | 2 cut(s) | 2551, 3265 |
| BsaWI | WCCGGW | 1 cut(s) | 2992 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 2878, 2908, 4017, 4047 |
| Bse21I | CCTNAGG | 3 cut(s) | 2335, 3048, 3444 |
| Bse8I | GATNNNNATC | 2 cut(s) | 2676, 3465 |
| BseJI | GATNNNNATC | 2 cut(s) | 2676, 3465 |
| BseRI | GAGGAG | 7 cut(s) | 185, 380, 527, 801, 1859, 2500, 3333 |
| BseSI | GKGCMC | 5 cut(s) | 25, 337, 497, 787, 3228 |
| BseXI | GCAGC | 5 cut(s) | 58, 2593, 2606, 3070, 3638 |
| BseYI | CCCAGC | 2 cut(s) | 481, 1296 |
| Bsh1236I | CGCG | 2 cut(s) | 393, 1221 |
| BshNI | GGYRCC | 3 cut(s) | 2330, 2696, 3223 |
| BsiHKAI | GWGCWC | 5 cut(s) | 497, 610, 787, 2829, 3662 |
| BsiHKCI | CYCGRG | 1 cut(s) | 2322 |
| BsiSI | CCGG | 2 cut(s) | 1329, 2993 |
| BslFI | GGGAC | 7 cut(s) | 755, 984, 1837, 2057, 3003, 3433, 3439 |
| BsmAI | GTCTC | 5 cut(s) | 1159, 2024, 2551, 2936, 3265 |
| BsmFI | GGGAC | 7 cut(s) | 755, 984, 1837, 2057, 3003, 3433, 3439 |
| BsmI | GAATGC | 3 cut(s) | 147, 385, 1795 |
| Bso31I | GGTCTC | 2 cut(s) | 2551, 3265 |
| BsoBI | CYCGRG | 1 cut(s) | 2322 |
| Bsp119I | TTCGAA | 1 cut(s) | 2117 |
| Bsp120I | GGGCCC | 1 cut(s) | 333 |
| Bsp19I | CCATGG | 4 cut(s) | 613, 1501, 3517, 3653 |
| BspACI | CCGC | 7 cut(s) | 116, 205, 391, 891, 3571, 3712, 3764 |
| BspFNI | CGCG | 2 cut(s) | 393, 1221 |
| BspHI | TCATGA | 2 cut(s) | 1771, 2191 |
| BspMAI | CTGCAG | 2 cut(s) | 133, 3871 |
| BspMI | ACCTGC | 2 cut(s) | 3441, 3874 |
| BspT104I | TTCGAA | 1 cut(s) | 2117 |
| BspT107I | GGYRCC | 3 cut(s) | 2330, 2696, 3223 |
| BspTNI | GGTCTC | 2 cut(s) | 2551, 3265 |
| BsrBI | CCGCTC | 1 cut(s) | 3714 |
| BssNAI | GTATAC | 1 cut(s) | 2443 |
| BssNI | GRCGYC | 1 cut(s) | 1403 |
| BssSI | CACGAG | 1 cut(s) | 3558 |
| BssT1I | CCWWGG | 9 cut(s) | 613, 1501, 2036, 2062, 2753, 3254, 3517, 3589, 3653 |
| Bst1107I | GTATAC | 1 cut(s) | 2443 |
| Bst2BI | CACGAG | 1 cut(s) | 3558 |
| Bst4CI | ACNGT | 8 cut(s) | 1337, 1667, 1753, 2286, 2461, 3454, 3581, 3620 |
| Bst6I | CTCTTC | 3 cut(s) | 114, 2979, 3390 |
| BstACI | GRCGYC | 1 cut(s) | 1403 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 2764, 3154 |
| BstBI | TTCGAA | 1 cut(s) | 2117 |
| BstC8I | GCNNGC | 5 cut(s) | 145, 911, 1038, 1675, 3369 |
| BstDSI | CCRYGG | 4 cut(s) | 613, 1501, 3517, 3653 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 512 |
| BstFNI | CGCG | 2 cut(s) | 393, 1221 |
| BstH2I | RGCGCY | 1 cut(s) | 2600 |
| BstHHI | GCGC | 4 cut(s) | 177, 637, 1161, 2599 |
| BstMAI | GTCTC | 5 cut(s) | 1159, 2024, 2551, 2936, 3265 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 228, 1025, 2591, 2603, 2764, 3154, 4015 |
| BstNSI | RCATGY | 2 cut(s) | 2750, 3760 |
| BstSFI | CTRYAG | 4 cut(s) | 129, 862, 1878, 3867 |
| BstSLI | GKGCMC | 5 cut(s) | 25, 337, 497, 787, 3228 |
| BstUI | CGCG | 2 cut(s) | 393, 1221 |
| BstV1I | GCAGC | 5 cut(s) | 58, 2593, 2606, 3070, 3638 |
| BstV2I | GAAGAC | 3 cut(s) | 269, 2106, 2133 |
| BstX2I | RGATCY | 7 cut(s) | 248, 1066, 1193, 1688, 1852, 2159, 2723 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 1190, 3851 |
| BstYI | RGATCY | 7 cut(s) | 248, 1066, 1193, 1688, 1852, 2159, 2723 |
| BstZ17I | GTATAC | 1 cut(s) | 2443 |
| Bsu36I | CCTNAGG | 3 cut(s) | 2335, 3048, 3444 |
| BsuI | GTATCC | 2 cut(s) | 3771, 3843 |
| BtgI | CCRYGG | 4 cut(s) | 613, 1501, 3517, 3653 |
| BtgZI | GCGATG | 1 cut(s) | 118 |
| BtsI | GCAGTG | 3 cut(s) | 1015, 1392, 2733 |
| BveI | ACCTGC | 2 cut(s) | 3441, 3874 |
| Cac8I | GCNNGC | 5 cut(s) | 145, 911, 1038, 1675, 3369 |
| CciI | TCATGA | 2 cut(s) | 1771, 2191 |
| CfoI | GCGC | 4 cut(s) | 177, 637, 1161, 2599 |
| CseI | GACGC | 2 cut(s) | 1392, 1590 |
| Csp6I | GTAC | 6 cut(s) | 254, 409, 773, 1254, 3060, 3455 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 3727, 3762 |
| CviQI | GTAC | 6 cut(s) | 254, 409, 773, 1254, 3060, 3455 |
| DraIII | CACNNNGTG | 3 cut(s) | 35, 1286, 3731 |
| EaeI | YGGCCR | 2 cut(s) | 1038, 3568 |
| Eam1104I | CTCTTC | 3 cut(s) | 114, 2979, 3390 |
| EarI | CTCTTC | 3 cut(s) | 114, 2979, 3390 |
| EciI | GGCGGA | 1 cut(s) | 131 |
| Ecl136II | GAGCTC | 1 cut(s) | 3660 |
| Eco130I | CCWWGG | 9 cut(s) | 613, 1501, 2036, 2062, 2753, 3254, 3517, 3589, 3653 |
| Eco147I | AGGCCT | 2 cut(s) | 575, 3367 |
| Eco24I | GRGCYC | 4 cut(s) | 337, 1594, 2222, 3662 |
| Eco31I | GGTCTC | 2 cut(s) | 2551, 3265 |
| Eco32I | GATATC | 1 cut(s) | 3410 |
| Eco47I | GGWCC | 9 cut(s) | 689, 700, 767, 2834, 2990, 3426, 3704, 3803, 3896 |
| Eco53kI | GAGCTC | 1 cut(s) | 3660 |
| Eco57I | CTGAAG | 7 cut(s) | 281, 286, 982, 2145, 2249, 2277, 2937 |
| Eco81I | CCTNAGG | 3 cut(s) | 2335, 3048, 3444 |
| Eco88I | CYCGRG | 1 cut(s) | 2322 |
| EcoICRI | GAGCTC | 1 cut(s) | 3660 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 512 |
| EcoO109I | RGGNCCY | 5 cut(s) | 700, 767, 2834, 2891, 3426 |
| EcoRI | GAATTC | 1 cut(s) | 386 |
| EcoRV | GATATC | 1 cut(s) | 3410 |
| EcoT14I | CCWWGG | 9 cut(s) | 613, 1501, 2036, 2062, 2753, 3254, 3517, 3589, 3653 |
| EcoT38I | GRGCYC | 4 cut(s) | 337, 1594, 2222, 3662 |
| ErhI | CCWWGG | 9 cut(s) | 613, 1501, 2036, 2062, 2753, 3254, 3517, 3589, 3653 |
| FaqI | GGGAC | 7 cut(s) | 755, 984, 1837, 2057, 3003, 3433, 3439 |
| FbaI | TGATCA | 6 cut(s) | 520, 1408, 2188, 3040, 3511, 4012 |
| FblI | GTMKAC | 4 cut(s) | 462, 1579, 2442, 3234 |
| Fnu4HI | GCNGC | 7 cut(s) | 72, 206, 2595, 2607, 3084, 3571, 3627 |
| FriOI | GRGCYC | 4 cut(s) | 337, 1594, 2222, 3662 |
| Fsp4HI | GCNGC | 7 cut(s) | 72, 206, 2595, 2607, 3084, 3571, 3627 |
| FspBI | CTAG | 7 cut(s) | 1398, 1473, 1533, 1716, 2142, 2469, 3630 |
| GlaI | GCGC | 4 cut(s) | 176, 636, 1160, 2598 |
| GluI | GCNGC | 7 cut(s) | 72, 206, 2595, 2607, 3084, 3571, 3627 |
| GsaI | CCCAGC | 2 cut(s) | 485, 1300 |
| GsuI | CTGGAG | 4 cut(s) | 377, 2805, 2880, 3332 |
| HaeII | RGCGCY | 1 cut(s) | 2600 |
| HapII | CCGG | 2 cut(s) | 1329, 2993 |
| HgaI | GACGC | 2 cut(s) | 1392, 1590 |
| HhaI | GCGC | 4 cut(s) | 177, 637, 1161, 2599 |
| Hin1I | GRCGYC | 1 cut(s) | 1403 |
| Hin6I | GCGC | 4 cut(s) | 175, 635, 1159, 2597 |
| HinP1I | GCGC | 4 cut(s) | 175, 635, 1159, 2597 |
| HincII | GTYRAC | 3 cut(s) | 1861, 2289, 2556 |
| HindII | GTYRAC | 3 cut(s) | 1861, 2289, 2556 |
| HpaI | GTTAAC | 1 cut(s) | 1861 |
| HpaII | CCGG | 2 cut(s) | 1329, 2993 |
| Hpy99I | CGWCG | 1 cut(s) | 191 |
| HpyCH4III | ACNGT | 8 cut(s) | 1337, 1667, 1753, 2286, 2461, 3454, 3581, 3620 |
| HpyCH4IV | ACGT | 6 cut(s) | 266, 666, 973, 1528, 3166, 3385 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 228, 1025, 2591, 2603, 2764, 3154, 4015 |
| HpySE526I | ACGT | 6 cut(s) | 266, 666, 973, 1528, 3166, 3385 |
| Hsp92I | GRCGYC | 1 cut(s) | 1403 |
| HspAI | GCGC | 4 cut(s) | 175, 635, 1159, 2597 |
| Ksp22I | TGATCA | 6 cut(s) | 520, 1408, 2188, 3040, 3511, 4012 |
| KspAI | GTTAAC | 1 cut(s) | 1861 |
| LmnI | GCTCC | 7 cut(s) | 172, 1846, 2824, 3035, 3091, 3346, 3657 |
| Lsp1109I | GCAGC | 5 cut(s) | 58, 2593, 2606, 3070, 3638 |
| MaeI | CTAG | 7 cut(s) | 1398, 1473, 1533, 1716, 2142, 2469, 3630 |
| MaeII | ACGT | 6 cut(s) | 266, 666, 973, 1528, 3166, 3385 |
| MaeIII | GTNAC | 8 cut(s) | 796, 989, 1262, 1931, 2908, 3448, 3555, 3632 |
| MbiI | CCGCTC | 1 cut(s) | 3714 |
| MflI | RGATCY | 7 cut(s) | 248, 1066, 1193, 1688, 1852, 2159, 2723 |
| MlsI | TGGCCA | 1 cut(s) | 1040 |
| MluNI | TGGCCA | 1 cut(s) | 1040 |
| MlyI | GAGTC | 7 cut(s) | 89, 304, 1652, 1939, 2026, 2123, 3668 |
| MmeI | TCCRAC | 2 cut(s) | 1611, 3138 |
| Mox20I | TGGCCA | 1 cut(s) | 1040 |
| MroXI | GAANNNNTTC | 4 cut(s) | 221, 2262, 3296, 3399 |
| MscI | TGGCCA | 1 cut(s) | 1040 |
| MseI | TTAA | 4 cut(s) | 933, 1860, 1893, 3056 |
| MslI | CAYNNNNRTG | 4 cut(s) | 933, 1119, 1188, 3519 |
| Msp20I | TGGCCA | 1 cut(s) | 1040 |
| MspA1I | CMGCKG | 3 cut(s) | 205, 481, 2297 |
| MspI | CCGG | 2 cut(s) | 1329, 2993 |
| Mva1269I | GAATGC | 3 cut(s) | 147, 385, 1795 |
| MvnI | CGCG | 2 cut(s) | 393, 1221 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 228, 1025, 2591, 2603, 2764, 3154, 4015 |
| NciI | CCSGG | 1 cut(s) | 1330 |
| NcoI | CCATGG | 4 cut(s) | 613, 1501, 3517, 3653 |
| NmeAIII | GCCGAG | 2 cut(s) | 3163, 3665 |
| NmuCI | GTSAC | 4 cut(s) | 1262, 1931, 3555, 3632 |
| NspI | RCATGY | 2 cut(s) | 2750, 3760 |
| NspV | TTCGAA | 1 cut(s) | 2117 |
| OliI | CACNNNNGTG | 1 cut(s) | 3519 |
| PagI | TCATGA | 2 cut(s) | 1771, 2191 |
| PaqCI | CACCTGC | 1 cut(s) | 3874 |
| PasI | CCCWGGG | 1 cut(s) | 3266 |
| PceI | AGGCCT | 2 cut(s) | 575, 3367 |
| PctI | GAATGC | 3 cut(s) | 147, 385, 1795 |
| PdmI | GAANNNNTTC | 4 cut(s) | 221, 2262, 3296, 3399 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 35 |
| PfoI | TCCNGGA | 1 cut(s) | 1328 |
| PkrI | GCNGC | 7 cut(s) | 73, 207, 2596, 2608, 3085, 3572, 3628 |
| PleI | GAGTC | 7 cut(s) | 89, 304, 1652, 1938, 2026, 2123, 3668 |
| PpsI | GAGTC | 7 cut(s) | 89, 304, 1652, 1938, 2026, 2123, 3668 |
| PpuMI | RGGWCCY | 4 cut(s) | 700, 767, 2834, 3426 |
| PsiI | TTATAA | 2 cut(s) | 2304, 2925 |
| Psp124BI | GAGCTC | 1 cut(s) | 3662 |
| Psp1406I | AACGTT | 1 cut(s) | 3385 |
| Psp5II | RGGWCCY | 4 cut(s) | 700, 767, 2834, 3426 |
| PspFI | CCCAGC | 2 cut(s) | 481, 1296 |
| PspOMI | GGGCCC | 1 cut(s) | 333 |
| PspPPI | RGGWCCY | 4 cut(s) | 700, 767, 2834, 3426 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 72, 104 |
| PstI | CTGCAG | 2 cut(s) | 133, 3871 |
| PsuI | RGATCY | 7 cut(s) | 248, 1066, 1193, 1688, 1852, 2159, 2723 |
| PvuII | CAGCTG | 2 cut(s) | 481, 2297 |
| RsaI | GTAC | 6 cut(s) | 255, 410, 774, 1255, 3061, 3456 |
| RsaNI | GTAC | 6 cut(s) | 254, 409, 773, 1254, 3060, 3455 |
| RseI | CAYNNNNRTG | 4 cut(s) | 933, 1119, 1188, 3519 |
| SacI | GAGCTC | 1 cut(s) | 3662 |
| SaqAI | TTAA | 4 cut(s) | 933, 1860, 1893, 3056 |
| SatI | GCNGC | 7 cut(s) | 72, 206, 2595, 2607, 3084, 3571, 3627 |
| ScaI | AGTACT | 1 cut(s) | 3061 |
| SchI | GAGTC | 7 cut(s) | 89, 304, 1652, 1939, 2026, 2123, 3668 |
| SfcI | CTRYAG | 4 cut(s) | 129, 862, 1878, 3867 |
| SfuI | TTCGAA | 1 cut(s) | 2117 |
| SinI | GGWCC | 9 cut(s) | 689, 700, 767, 2834, 2990, 3426, 3704, 3803, 3896 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 933, 1119, 1188, 3519 |
| SmlI | CTYRAG | 4 cut(s) | 509, 695, 1572, 3878 |
| SmoI | CTYRAG | 4 cut(s) | 509, 695, 1572, 3878 |
| SseBI | AGGCCT | 2 cut(s) | 575, 3367 |
| SsiI | CCGC | 7 cut(s) | 116, 205, 391, 891, 3571, 3712, 3764 |
| SspMI | CTAG | 7 cut(s) | 1398, 1473, 1533, 1716, 2142, 2469, 3630 |
| SstI | GAGCTC | 1 cut(s) | 3662 |
| StuI | AGGCCT | 2 cut(s) | 575, 3367 |
| StyI | CCWWGG | 9 cut(s) | 613, 1501, 2036, 2062, 2753, 3254, 3517, 3589, 3653 |
| TaaI | ACNGT | 8 cut(s) | 1337, 1667, 1753, 2286, 2461, 3454, 3581, 3620 |
| TaiI | ACGT | 6 cut(s) | 269, 669, 976, 1531, 3169, 3388 |
| TaqI | TCGA | 9 cut(s) | 93, 814, 1129, 1622, 1928, 2117, 2387, 3325, 3393 |
| TaqII | GACCGA | 1 cut(s) | 2469 |
| TatI | WGTACW | 2 cut(s) | 408, 3059 |
| TauI | GCSGC | 2 cut(s) | 208, 3573 |
| Tru1I | TTAA | 4 cut(s) | 933, 1860, 1893, 3056 |
| Tru9I | TTAA | 4 cut(s) | 933, 1860, 1893, 3056 |
| TseFI | GTSAC | 4 cut(s) | 1262, 1931, 3555, 3632 |
| TseI | GCWGC | 5 cut(s) | 71, 2594, 2606, 3083, 3626 |
| Tsp45I | GTSAC | 4 cut(s) | 1262, 1931, 3555, 3632 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 35 |
| VneI | GTGCAC | 2 cut(s) | 493, 783 |
| VpaK11BI | GGWCC | 9 cut(s) | 689, 700, 767, 2834, 2990, 3426, 3704, 3803, 3896 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 512 |
| XceI | RCATGY | 2 cut(s) | 2750, 3760 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 1376, 1435 |
| XmiI | GTMKAC | 4 cut(s) | 462, 1579, 2442, 3234 |
| XmnI | GAANNNNTTC | 4 cut(s) | 221, 2262, 3296, 3399 |
| XspI | CTAG | 7 cut(s) | 1398, 1473, 1533, 1716, 2142, 2469, 3630 |
| ZrmI | AGTACT | 1 cut(s) | 3061 |