Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0008684

Physical Location & Seq

Genomic Coordinates Forward (+)

53231890 .. 53240132

Gene Structure 8243 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG267000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3702 bp

ATGCTGGAGAATGAGGAGAAGAATGAGAATGCTGAATTTCGTGTCAAAGAGGTTCAATACATTCAAGCTGAAGTAAAGATAATCAAGTGCCTTGTGGAAAACATTGTAGTAGACATATCCTTTAATCAGCTGGGAGGGTTGTGCACCCTTTGTTTCCTTGAGGAGGTCGATCATCTCATAAATCAAAATCATTTGTTCAAGCGTAGTATTATACTGATAAAGGCCTGGTGTTATTATGAGAGCCGAATACTAGGCGCTCACCATGGACTTATCTCCACCTATGCTTTGGAAACATTGGTTTTATACATTTTTCATGTTTTCAACAACTCCTTTGCTGGACCACTTGAGGTCTTGTATCGCTTTCTAGAGTTCTTTAGTAAGTTTGACTGGGAGAACTTTTGTGTTAGCTTAAGGGGTCCTGTGCCCATTAGTTCTCTTCCAGATGTAACTGCCGAACCTCCTCGAAAAGATGGTGGAGAGTTACTACTAAGCGAAGTGTTTCTTGATGCGTGTAGTGCAGTGTATGCTGTCCGCCCTGGTGGTCAAGAAAATCAGGGCCAAGCTTTTGTTTCCAAACATTTTAATGTTATTGATCCTTTGAGAATCAACAACAACCTTGGACGTAGTGTTAGTAAAGGTAACTTCTTTAGGATACGCAGTGCATTTGCATTTGGGGCTAAAAGGCTGGCCAGGTTGCTTGATTGTTCAAAGGAGGATCTATGTTTCGAAGTAAATCAGTTTTTTCTCAACACTTGGGATAGACATGGAAGTGGTCATCGACCTGATGCACCACGTAATGATCTTAGGCACTTGCGACTTTCAAATGCAGACCACTTACATGGGTCTGAGAATCGCAGGAACAACTTAAGCGGCAAAAAAAATGAAAGTTCCTCTGGTCGAGATACTCAAGGTGAGGGAAAACATGGTTCACTTAGTGTTTCCTCTCAGCAGGGTAGTTATCCAATAGAAAGCATATCACGGAACAGTGTTTTTTCTAGTGTAACTGATGGTCAAAGCCAAAAGAATCACGTGAACATGAACATTGGGAGGGCCTCTGATCAGATTAGAAAGGAAATCAATCCCGACCTGGGTGCACATGTGGATAAAGGTCAGAGAAAACCGGATAGCTTGGTTAATGACCTTCACGGGAGGTTTCTTTTTGCAAGGACACGCTCTAGTCCTGAGCTTACTGATACATATAGTGAAGTTCCCTCTCAAGGTCTGCGGAATAGGGCCCCAGAGAGTGGGAAAGGCCAAACTTATTCCACGAGGTTGGATAATAGCAGGAGGAAGAACCTTGAGGCTGATAATTTAGCAAGCCACAGATTTATATCTTCAGCTGATGATCCTTCATCTGCTAACCATATTCCATCCCATCAAAGCCTTGATGTTGTGGTTGATTCAAATAATAGCTACCAGGATGAATCTGGTTCGAGTACTGTTGCTGAAGATTTTCCATCTATTTCAGGGACACAAGGGATGCACCAGGAGGAGCAAGATCTTGTTAACATGATGGCATCTTCTGCAGCTCATGGTTTCAATGGACAGGTTCATCTTCCCCTGAGTTTGGGTTCCGGTCATTTACCATTTCCAATCCCATCTTCTGTTCTTGCTTCGATGGGATATGCTCAGAGGAATATGGGTGGCATGTTTCCCACAAATTTTCCCTTGATGGAGAGTCCTTGGGGAACGAATATGCATTTTCCTCAAGGTGTTGTTCCGTCACCTTTAACTCATTATTTCCCTGGCATGGGGTTGACATCAAATCCTGAAGAATCGGTGGAACCTGGTAATGAAGATTTTGGTTCTGTGGAGATGAACTCAAGTGAAACTGAGCATGATTTCTGGCACAACCAGGAGAGGGGATCTACTAGTGGATTTGATCATGATAATGGAGGTTTGGAAATGCTTGAGGCAGATGATAGGCAACAGTCAACCTCAGCTGGTTATAACTCCCATCCTTCATCTCGGATAGGCGCTGCTGTAAGTTCTATGCGAGTTCAACAAAAGTCCCCTAAAGAAAGCCGAGATTCAACGAGAGAAGATCATGTCGATGATTTTCAGTATCAAGATAACCGAGGAAATGAGGTATACTTTGATGACCGAGTGAGTTCTAGGTCGTTGTCGGCCAATTATACTAGTTCTGCAAGAAGCAAGACCTCCTCTGAGAGTTCTTGGGAAGGATCATCAGCAAAAGTGTCAAAGTCAACAAGGGAAAAACGGGGCAGAAAAGCTGCTCTGTCAACAGCTCCATCTACCTCATATGGGAAAGGTAAGAGTGTGTCTGAACATTCTTCTACTCAGGCAGATGATGAAAACAAAGATTGGAATCTGCCAACAACTTTAGGTGCTGAAATGGTAGAAAGAAGCACACTATCTCAACCTGTTGCTTCCTTGCATGTTCCAAGACATCAAATGCCGGGTTTTGAACCATCTCAAACAAGTGGATCAGATTCGCTGATGCCTTTCCCAGTTCTCTTAGGGCCTGGCTCACGACAGAGAGCTACAAATGATTCTGGTGCTACCTATGCATTTTATCCTACGGGACCTCCAGTTCCATTTGTTACAATGCTACCATATTACAATTTCCCAGCAGAGGCAGGAACTTCAGATGTATCAAGCCAATTCAGTAGGGAAGATGGACCTGAAAGTGATTCTGGTCAGAACTTTGATTCCGCTGAAGGAATTGATCAACCTGAGTTAAGAATTTCTAACTCCATGGGAAGGGTTGCTCCTATTGAGCCTTCTGAGTATAAATCTGACATCCTTCACAGTGACTTTGCCAGCCATTATCAGAATTTGCAGTTTGGACGGTTATGCCAAAATCCTCGGCATTCTCCACCTATGGTTTATCCTTCACCTGTTATGGTGCCCCCTGCCTACTTGCAAGGGCGATTTCCTTGGGATGGTCCTGGGAGACCTCTCTCAGCCAATATGAATCTCATCACTCAGCTTATGAATTATGGCCCTCGTGTTGTTCCTGTTGCTGCGCCTCTCCAGTCTGTTTCTAACAGACCTGCTAGTGTGTATCAACGCTATGTCGATGAGATTCCAAGATACCGCAGTGGGACAGGGACCTACCTTCCAAATCCTAAGGTTTCTGTAAGGGACCGCCATACTTCAAGTACAAGAAGGGGGAGTTTCAATTATGACAGAAATGACCACCATGGTGATAGAGACGGGAACTGGAATGCCAACTCAAAGTCACGAGCTTCTGCACGCAACCACAGTCGCAGCCAAGCTGAGAAGCCAAATTCAAGAGTAGACCGTATGGCAGCTAGTGAGAGCCGTGCTGAGAGGCCATGGAGCTCACATAGACATGATTCATTCCCTTCATATCAATCTCAAAACGGTCCTATCCGCTCAAGTACTACACAGAGTGGTTCCACTAATGTGGCGTATGGCATGTATCCACTACCAAGCATGAATCCCGGTGGGGTGTCATCAAATGGACCTACCATGCCCCCTCTTGTCATGCTATATCCTTATGATCATAATGCTGGCTATGGGCCACCACCTGCCGAACAGCTGGAGTTTGGTTCTCTTGGACCAGTGGGTTTCTCAGGTTTGAATGAAGTTTCACAGTTAAATGAGGGAAGTCGGATGGGTGGAGTATTCGAGGAACAAAGATTTCACGGTGGCTCAACTCAACGATCGTCACCTGATCAGCCTTCCTCACCACACATCCAAAGGGGAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004652 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006396 GO:0006399 GO:0006401 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016074 GO:0016075 GO:0016077 GO:0016078 GO:0016740 GO:0016772 GO:0016779 GO:0019439 GO:0031123 GO:0031499 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0043021 GO:0043023 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043629 GO:0043630 GO:0043631 GO:0043632 GO:0043633 GO:0043634 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044877 GO:0046483 GO:0046700 GO:0070013 GO:0070566 GO:0071025 GO:0071027 GO:0071029 GO:0071035 GO:0071046 GO:0071704 GO:0090304 GO:1901360 GO:1901361 GO:1901575 GO:1990817

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NTP_transf_2

Protein Analysis

1233

Amino Acids

136.15

Weight (kDa)

6.1

Isoelectric Point (pI)

52.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAP-OAS1	PF26180	60 - 252	7.4e-93	PAP/OAS1 substrate-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0008684)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61690 AT3G61690 AT3G61690
fragaria_vesca	FvH4_7g16250 FvH4_7g16250 FvH4_7g16250 FvH4_7g16250
malus_domestica	MD01G1079200.v1.1 MD07G1148100.v1.1
prunus_persica	Prupe.2G186200_v2.0.a1 Prupe.2G186200_v2.0.a1
pyrus_communis	pycom01g10750 pycom07g14710
rosa_chinensis	RchiOBHm_Chr1g0359271
rosa_laevigata	RLG00000027887
rosa_multiflora	Rmu_ssc0000135.1_g000035
rosa_roxburghii	Rroxscaffold_4G00297170
rosa_rugosa	Rorug01G0269000
rosa_samantha	Rh1AG283000 Rh1BG249200 Rh1CG267000 Rh1DG278100
rosa_wichuraiana	Rw1G025120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1950
AarI	CACCTGC	1 cut(s)	3526
Acc36I	ACCTGC	2 cut(s)	3025, 3526
AccB1I	GGYRCC	1 cut(s)	2869
AccB7I	CCANNNNNTGG	1 cut(s)	1244
AccBSI	CCGCTC	1 cut(s)	3363
AccI	GTMKAC	3 cut(s)	111, 2091, 3264
AciI	CCGC	7 cut(s)	532, 870, 1225, 2676, 3061, 3112, 3361
AclWI	GGATC	6 cut(s)	587, 723, 1340, 1873, 2191, 2455
AcoI	YGGCCR	2 cut(s)	687, 2127
AcsI	RAATTY	5 cut(s)	35, 1660, 2706, 2797, 3253
AcuI	CTGAAG	6 cut(s)	90, 1320, 1467, 1791, 2592, 2700
AcvI	CACGTG	1 cut(s)	1030
AdeI	CACNNNGTG	2 cut(s)	935, 3380
AfaI	GTAC	3 cut(s)	1438, 3127, 3370
AflII	CTTAAG	2 cut(s)	409, 865
AflIII	ACRYGT	1 cut(s)	1096
AhlI	ACTAGT	2 cut(s)	1871, 2138
AjuI	GAANNNNNNNTTGG	2 cut(s)	1585, 1617
AleI	CACNNNNGTG	2 cut(s)	3168, 3392
AloI	GAACNNNNNNTCC	4 cut(s)	2538, 2570, 2657, 2689
Alw21I	GWGCWC	3 cut(s)	146, 1096, 3311
Alw26I	GTCTC	2 cut(s)	2911, 3171
Alw44I	GTGCAC	2 cut(s)	142, 1092
AlwI	GGATC	6 cut(s)	587, 723, 1340, 1873, 2191, 2455
ApaI	GGGCCC	1 cut(s)	1237
ApaLI	GTGCAC	2 cut(s)	142, 1092
ApeKI	GCWGC	6 cut(s)	1526, 1979, 2234, 2987, 3234, 3275
ApoI	RAATTY	5 cut(s)	35, 1660, 2706, 2797, 3253
Asp700I	GAANNNNTTC	2 cut(s)	498, 1452
AspLEI	GCGC	3 cut(s)	257, 1979, 2992
AsuC2I	CCSGG	2 cut(s)	2421, 3432
AsuHPI	GGTGA	7 cut(s)	251, 923, 1716, 2850, 3182, 3651, 3669
AsuII	TTCGAA	1 cut(s)	726
AxyI	CCTNAGG	1 cut(s)	3093
BaeGI	GKGCMC	5 cut(s)	146, 426, 1096, 1237, 2874
BaeI	ACNNNNGTAYC	2 cut(s)	3049, 3082
BalI	TGGCCA	1 cut(s)	689
BanI	GGYRCC	1 cut(s)	2869
BanII	GRGCYC	2 cut(s)	1237, 3311
BauI	CACGAG	3 cut(s)	1267, 2970, 3207
BbrPI	CACGTG	1 cut(s)	1030
Bbv12I	GWGCWC	3 cut(s)	146, 1096, 3311
BbvCI	CCTCAGC	1 cut(s)	1939
BbvI	GCAGC	6 cut(s)	1538, 1966, 2221, 2974, 3246, 3287
BceAI	ACGGC	1 cut(s)	3273
BcgI	CGANNNNNNTGC	2 cut(s)	1073, 1107
BciVI	GTATCC	2 cut(s)	645, 3420
BclI	TGATCA	5 cut(s)	1057, 1882, 2689, 3490, 3664
BcnI	CCSGG	2 cut(s)	2421, 3432
BcoDI	GTCTC	2 cut(s)	2911, 3171
BcuI	ACTAGT	2 cut(s)	1871, 2138
BfaI	CTAG	9 cut(s)	251, 365, 996, 1176, 1872, 2115, 2139, 3021, 3279
BfmI	CTRYAG	1 cut(s)	1524
BfoI	RGCGCY	2 cut(s)	258, 1980
BfrI	CTTAAG	2 cut(s)	409, 865
BfuAI	ACCTGC	2 cut(s)	3025, 3526
BfuI	GTATCC	2 cut(s)	645, 3420
BglII	AGATCT	1 cut(s)	1498
BisI	GCNGC	7 cut(s)	871, 1527, 1980, 2235, 2988, 3235, 3276
BlsI	GCNGC	7 cut(s)	872, 1528, 1981, 2236, 2989, 3236, 3277
BmcAI	AGTACT	2 cut(s)	1438, 3370
BmrI	ACTGGG	2 cut(s)	397, 2465
BmsI	GCATC	5 cut(s)	496, 775, 1470, 1526, 2451
BmuI	ACTGGG	2 cut(s)	397, 2465
BplI	GAGNNNNNCTC	2 cut(s)	1805, 1837
BpmI	CTGGAG	4 cut(s)	26, 2535, 2981, 3551
Bpu10I	CCTNAGC	2 cut(s)	1182, 1939
Bpu14I	TTCGAA	1 cut(s)	726
BpuEI	CTTGAG	9 cut(s)	179, 365, 891, 1200, 1319, 1692, 1807, 1931, 3349
BpuMI	CCSGG	2 cut(s)	2421, 3432
BsaAI	YACGTR	2 cut(s)	794, 1030
BsaBI	GATNNNNATC	2 cut(s)	1330, 2328
BsaI	GGTCTC	1 cut(s)	2911
BsaWI	WCCGGW	2 cut(s)	1120, 1574
BsaXI	ACNNNNNCTCC	2 cut(s)	2533, 2563
Bse1I	ACTGG	6 cut(s)	392, 2471, 2552, 2998, 3191, 3551
Bse21I	CCTNAGG	1 cut(s)	3093
Bse8I	GATNNNNATC	2 cut(s)	1330, 2328
BseGI	GGATG	8 cut(s)	1370, 1426, 1485, 1957, 2763, 2911, 3609, 3684
BseJI	GATNNNNATC	2 cut(s)	1330, 2328
BseNI	ACTGG	6 cut(s)	392, 2471, 2552, 2998, 3191, 3551
BseRI	GAGGAG	5 cut(s)	29, 176, 450, 1505, 2152
BseSI	GKGCMC	5 cut(s)	146, 426, 1096, 1237, 2874
BseXI	GCAGC	6 cut(s)	1538, 1966, 2221, 2974, 3246, 3287
BseYI	CCCAGC	2 cut(s)	130, 2590
BsgI	GTGCAG	2 cut(s)	537, 3201
Bsh1285I	CGRYCG	1 cut(s)	3656
BshNI	GGYRCC	1 cut(s)	2869
BsiEI	CGRYCG	1 cut(s)	3656
BsiHKAI	GWGCWC	3 cut(s)	146, 1096, 3311
BsiSI	CCGG	4 cut(s)	1121, 1575, 2420, 3432
BslFI	GGGAC	6 cut(s)	1483, 1996, 2559, 3082, 3088, 3122
BsmAI	GTCTC	2 cut(s)	2911, 3171
BsmBI	CGTCTC	1 cut(s)	3171
BsmFI	GGGAC	6 cut(s)	1483, 1996, 2559, 3082, 3088, 3122
BsmI	GAATGC	3 cut(s)	34, 2833, 3196
Bso31I	GGTCTC	1 cut(s)	2911
Bsp119I	TTCGAA	1 cut(s)	726
Bsp120I	GGGCCC	1 cut(s)	1233
Bsp1286I	GDGCHC	6 cut(s)	146, 426, 1096, 1237, 2874, 3311
Bsp19I	CCATGG	4 cut(s)	262, 2718, 3166, 3302
BspACI	CCGC	7 cut(s)	532, 870, 1225, 2676, 3061, 3112, 3361
BspHI	TCATGA	1 cut(s)	1885
BspMAI	CTGCAG	1 cut(s)	1528
BspMI	ACCTGC	2 cut(s)	3025, 3526
BspPI	GGATC	6 cut(s)	587, 723, 1340, 1873, 2191, 2455
BspT104I	TTCGAA	1 cut(s)	726
BspT107I	GGYRCC	1 cut(s)	2869
BspTI	CTTAAG	2 cut(s)	409, 865
BspTNI	GGTCTC	1 cut(s)	2911
BsrBI	CCGCTC	1 cut(s)	3363
BsrI	ACTGG	6 cut(s)	392, 2471, 2552, 2998, 3191, 3551
BssNAI	GTATAC	1 cut(s)	2092
BssSI	CACGAG	3 cut(s)	1267, 2970, 3207
BssT1I	CCWWGG	7 cut(s)	262, 616, 1682, 2718, 2900, 3166, 3302
Bst1107I	GTATAC	1 cut(s)	2092
Bst2BI	CACGAG	3 cut(s)	1267, 2970, 3207
Bst6I	CTCTTC	1 cut(s)	441
BstAFI	CTTAAG	2 cut(s)	409, 865
BstAPI	GCANNNNNTGC	2 cut(s)	524, 1523
BstBAI	YACGTR	2 cut(s)	794, 1030
BstBI	TTCGAA	1 cut(s)	726
BstC8I	GCNNGC	5 cut(s)	687, 1318, 2785, 3220, 3502
BstDSI	CCRYGG	4 cut(s)	262, 2718, 3166, 3302
BstENI	CCTNNNNNAGG	1 cut(s)	161
BstF5I	GGATG	8 cut(s)	1370, 1426, 1485, 1957, 2763, 2911, 3609, 3684
BstH2I	RGCGCY	2 cut(s)	258, 1980
BstHHI	GCGC	3 cut(s)	257, 1979, 2992
BstMAI	GTCTC	2 cut(s)	2911, 3171
BstMCI	CGRYCG	1 cut(s)	3656
BstMWI	GCNNNNNNNGC	5 cut(s)	515, 524, 674, 1523, 2528
BstNSI	RCATGY	4 cut(s)	1100, 1651, 2402, 3409
BstSFI	CTRYAG	1 cut(s)	1524
BstSLI	GKGCMC	5 cut(s)	146, 426, 1096, 1237, 2874
BstV1I	GCAGC	6 cut(s)	1538, 1966, 2221, 2974, 3246, 3287
BstX2I	RGATCY	3 cut(s)	715, 1498, 1865
BstXI	CCANNNNNNTGG	3 cut(s)	839, 1273, 3394
BstYI	RGATCY	3 cut(s)	715, 1498, 1865
BstZ17I	GTATAC	1 cut(s)	2092
Bsu36I	CCTNAGG	1 cut(s)	3093
BsuI	GTATCC	2 cut(s)	645, 3420
BtgI	CCRYGG	4 cut(s)	262, 2718, 3166, 3302
BtsCI	GGATG	8 cut(s)	1370, 1426, 1485, 1957, 2763, 2911, 3609, 3684
BtsI	GCAGTG	3 cut(s)	525, 664, 3070
BtsIMutI	CAGTG	6 cut(s)	525, 664, 991, 2779, 3070, 3558
BveI	ACCTGC	2 cut(s)	3025, 3526
Cac8I	GCNNGC	5 cut(s)	687, 1318, 2785, 3220, 3502
CciI	TCATGA	1 cut(s)	1885
CfoI	GCGC	3 cut(s)	257, 1979, 2992
CsiI	ACCWGGT	1 cut(s)	1786
Csp6I	GTAC	3 cut(s)	1437, 3126, 3369
CviQI	GTAC	3 cut(s)	1437, 3126, 3369
DraIII	CACNNNGTG	2 cut(s)	935, 3380
EaeI	YGGCCR	2 cut(s)	687, 2127
Eam1104I	CTCTTC	1 cut(s)	441
EarI	CTCTTC	1 cut(s)	441
EciI	GGCGGA	1 cut(s)	521
Ecl136II	GAGCTC	1 cut(s)	3309
Eco130I	CCWWGG	7 cut(s)	262, 616, 1682, 2718, 2900, 3166, 3302
Eco147I	AGGCCT	1 cut(s)	224
Eco24I	GRGCYC	2 cut(s)	1237, 3311
Eco31I	GGTCTC	1 cut(s)	2911
Eco53kI	GAGCTC	1 cut(s)	3309
Eco57I	CTGAAG	6 cut(s)	90, 1320, 1467, 1791, 2592, 2700
Eco72I	CACGTG	1 cut(s)	1030
Eco81I	CCTNAGG	1 cut(s)	3093
EcoICRI	GAGCTC	1 cut(s)	3309
EcoNI	CCTNNNNNAGG	1 cut(s)	161
EcoO109I	RGGNCCY	7 cut(s)	416, 1050, 1233, 1234, 2483, 2546, 3075
EcoT14I	CCWWGG	7 cut(s)	262, 616, 1682, 2718, 2900, 3166, 3302
EcoT22I	ATGCAT	2 cut(s)	1701, 2533
EcoT38I	GRGCYC	2 cut(s)	1237, 3311
ErhI	CCWWGG	7 cut(s)	262, 616, 1682, 2718, 2900, 3166, 3302
Esp3I	CGTCTC	1 cut(s)	3171
FalI	AAGNNNNNCTT	2 cut(s)	486, 518
FaqI	GGGAC	6 cut(s)	1483, 1996, 2559, 3082, 3088, 3122
FauNDI	CATATG	1 cut(s)	2263
FbaI	TGATCA	5 cut(s)	1057, 1882, 2689, 3490, 3664
FblI	GTMKAC	3 cut(s)	111, 2091, 3264
Fnu4HI	GCNGC	7 cut(s)	871, 1527, 1980, 2235, 2988, 3235, 3276
FokI	GGATG	8 cut(s)	1357, 1433, 1492, 1944, 2750, 2918, 3616, 3671
FriOI	GRGCYC	2 cut(s)	1237, 3311
Fsp4HI	GCNGC	7 cut(s)	871, 1527, 1980, 2235, 2988, 3235, 3276
FspBI	CTAG	9 cut(s)	251, 365, 996, 1176, 1872, 2115, 2139, 3021, 3279
GlaI	GCGC	3 cut(s)	256, 1978, 2991
GluI	GCNGC	7 cut(s)	871, 1527, 1980, 2235, 2988, 3235, 3276
GsaI	CCCAGC	2 cut(s)	134, 2594
GsuI	CTGGAG	4 cut(s)	26, 2535, 2981, 3551
HaeII	RGCGCY	2 cut(s)	258, 1980
HapII	CCGG	4 cut(s)	1121, 1575, 2420, 3432
HhaI	GCGC	3 cut(s)	257, 1979, 2992
Hin6I	GCGC	3 cut(s)	255, 1977, 2990
HinP1I	GCGC	3 cut(s)	255, 1977, 2990
HincII	GTYRAC	5 cut(s)	1507, 1758, 1935, 2208, 2244
HindII	GTYRAC	5 cut(s)	1507, 1758, 1935, 2208, 2244
HindIII	AAGCTT	1 cut(s)	561
HpaI	GTTAAC	1 cut(s)	1507
HpaII	CCGG	4 cut(s)	1121, 1575, 2420, 3432
HphI	GGTGA	7 cut(s)	251, 923, 1716, 2850, 3182, 3651, 3669
HpyCH4IV	ACGT	3 cut(s)	622, 793, 1029
HpyF10VI	GCNNNNNNNGC	5 cut(s)	515, 524, 674, 1523, 2528
HpySE526I	ACGT	3 cut(s)	622, 793, 1029
HspAI	GCGC	3 cut(s)	255, 1977, 2990
Ksp22I	TGATCA	5 cut(s)	1057, 1882, 2689, 3490, 3664
KspAI	GTTAAC	1 cut(s)	1507
LmnI	GCTCC	4 cut(s)	1492, 2254, 2737, 3306
Lsp1109I	GCAGC	6 cut(s)	1538, 1966, 2221, 2974, 3246, 3287
LweI	GCATC	5 cut(s)	496, 775, 1470, 1526, 2451
MabI	ACCWGGT	1 cut(s)	1786
MaeI	CTAG	9 cut(s)	251, 365, 996, 1176, 1872, 2115, 2139, 3021, 3279
MaeII	ACGT	3 cut(s)	622, 793, 1029
MaeIII	GTNAC	9 cut(s)	445, 480, 638, 1000, 1722, 2563, 2774, 3204, 3657
MbiI	CCGCTC	1 cut(s)	3363
MflI	RGATCY	3 cut(s)	715, 1498, 1865
MhlI	GDGCHC	6 cut(s)	146, 426, 1096, 1237, 2874, 3311
MlsI	TGGCCA	1 cut(s)	689
MluNI	TGGCCA	1 cut(s)	689
MlyI	GAGTC	1 cut(s)	1687
MmeI	TCCRAC	2 cut(s)	1254, 3581
Mox20I	TGGCCA	1 cut(s)	689
Mph1103I	ATGCAT	2 cut(s)	1701, 2533
MroXI	GAANNNNTTC	2 cut(s)	498, 1452
MscI	TGGCCA	1 cut(s)	689
MseI	TTAA	9 cut(s)	123, 410, 582, 866, 1134, 1506, 1730, 2702, 3587
MslI	CAYNNNNRTG	8 cut(s)	582, 768, 837, 1890, 2052, 3168, 3318, 3392
Msp20I	TGGCCA	1 cut(s)	689
MspA1I	CMGCKG	5 cut(s)	130, 1340, 1943, 2678, 3529
MspCI	CTTAAG	2 cut(s)	409, 865
MspI	CCGG	4 cut(s)	1121, 1575, 2420, 3432
Mva1269I	GAATGC	3 cut(s)	34, 2833, 3196
MwoI	GCNNNNNNNGC	5 cut(s)	515, 524, 674, 1523, 2528
NciI	CCSGG	2 cut(s)	2421, 3432
NcoI	CCATGG	4 cut(s)	262, 2718, 3166, 3302
NdeI	CATATG	1 cut(s)	2263
NmeAIII	GCCGAG	2 cut(s)	2051, 2809
NmuCI	GTSAC	4 cut(s)	1722, 2774, 3204, 3657
NsiI	ATGCAT	2 cut(s)	1701, 2533
NspI	RCATGY	4 cut(s)	1100, 1651, 2402, 3409
NspV	TTCGAA	1 cut(s)	726
OliI	CACNNNNGTG	2 cut(s)	3168, 3392
PagI	TCATGA	1 cut(s)	1885
PaqCI	CACCTGC	1 cut(s)	3526
PceI	AGGCCT	1 cut(s)	224
PciI	ACATGT	1 cut(s)	1096
PctI	GAATGC	3 cut(s)	34, 2833, 3196
PdmI	GAANNNNTTC	2 cut(s)	498, 1452
PflMI	CCANNNNNTGG	1 cut(s)	1244
PkrI	GCNGC	7 cut(s)	872, 1528, 1981, 2236, 2989, 3236, 3277
Ple19I	CGATCG	1 cut(s)	3656
PleI	GAGTC	1 cut(s)	1686
PmaCI	CACGTG	1 cut(s)	1030
PmlI	CACGTG	1 cut(s)	1030
PpsI	GAGTC	1 cut(s)	1686
Ppu21I	YACGTR	2 cut(s)	794, 1030
PpuMI	RGGWCCY	3 cut(s)	416, 2546, 3075
PscI	ACATGT	1 cut(s)	1096
PsiI	TTATAA	1 cut(s)	1950
Psp124BI	GAGCTC	1 cut(s)	3311
Psp5II	RGGWCCY	3 cut(s)	416, 2546, 3075
PspCI	CACGTG	1 cut(s)	1030
PspFI	CCCAGC	2 cut(s)	130, 2590
PspOMI	GGGCCC	1 cut(s)	1233
PspPPI	RGGWCCY	3 cut(s)	416, 2546, 3075
PstI	CTGCAG	1 cut(s)	1528
PsuI	RGATCY	3 cut(s)	715, 1498, 1865
PvuI	CGATCG	1 cut(s)	3656
PvuII	CAGCTG	4 cut(s)	130, 1340, 1943, 3529
RsaI	GTAC	3 cut(s)	1438, 3127, 3370
RsaNI	GTAC	3 cut(s)	1437, 3126, 3369
RseI	CAYNNNNRTG	8 cut(s)	582, 768, 837, 1890, 2052, 3168, 3318, 3392
SacI	GAGCTC	1 cut(s)	3311
SaqAI	TTAA	9 cut(s)	123, 410, 582, 866, 1134, 1506, 1730, 2702, 3587
SatI	GCNGC	7 cut(s)	871, 1527, 1980, 2235, 2988, 3235, 3276
ScaI	AGTACT	2 cut(s)	1438, 3370
SchI	GAGTC	1 cut(s)	1687
SduI	GDGCHC	6 cut(s)	146, 426, 1096, 1237, 2874, 3311
SexAI	ACCWGGT	1 cut(s)	1786
SfaNI	GCATC	5 cut(s)	496, 775, 1470, 1526, 2451
SfcI	CTRYAG	1 cut(s)	1524
SfuI	TTCGAA	1 cut(s)	726
SmiMI	CAYNNNNRTG	8 cut(s)	582, 768, 837, 1890, 2052, 3168, 3318, 3392
SpeI	ACTAGT	2 cut(s)	1871, 2138
SseBI	AGGCCT	1 cut(s)	224
SsiI	CCGC	7 cut(s)	532, 870, 1225, 2676, 3061, 3112, 3361
SspMI	CTAG	9 cut(s)	251, 365, 996, 1176, 1872, 2115, 2139, 3021, 3279
SstI	GAGCTC	1 cut(s)	3311
StuI	AGGCCT	1 cut(s)	224
StyI	CCWWGG	7 cut(s)	262, 616, 1682, 2718, 2900, 3166, 3302
TaiI	ACGT	3 cut(s)	625, 796, 1032
TaqII	GACCGA	1 cut(s)	2118
TatI	WGTACW	3 cut(s)	1436, 3125, 3368
TauI	GCSGC	1 cut(s)	873
Tru1I	TTAA	9 cut(s)	123, 410, 582, 866, 1134, 1506, 1730, 2702, 3587
Tru9I	TTAA	9 cut(s)	123, 410, 582, 866, 1134, 1506, 1730, 2702, 3587
TscAI	CASTG	6 cut(s)	525, 664, 991, 2779, 3070, 3558
TseFI	GTSAC	4 cut(s)	1722, 2774, 3204, 3657
TseI	GCWGC	6 cut(s)	1526, 1979, 2234, 2987, 3234, 3275
Tsp45I	GTSAC	4 cut(s)	1722, 2774, 3204, 3657
TspGWI	ACGGA	2 cut(s)	994, 1710
TspRI	CASTG	6 cut(s)	525, 664, 991, 2779, 3070, 3558
Van91I	CCANNNNNTGG	1 cut(s)	1244
Vha464I	CTTAAG	2 cut(s)	409, 865
VneI	GTGCAC	2 cut(s)	142, 1092
XagI	CCTNNNNNAGG	1 cut(s)	161
XapI	RAATTY	5 cut(s)	35, 1660, 2706, 2797, 3253
XbaI	TCTAGA	1 cut(s)	364
XceI	RCATGY	4 cut(s)	1100, 1651, 2402, 3409
XcmI	CCANNNNNNNNNTGG	2 cut(s)	283, 1424
XmiI	GTMKAC	3 cut(s)	111, 2091, 3264
XmnI	GAANNNNTTC	2 cut(s)	498, 1452
XspI	CTAG	9 cut(s)	251, 365, 996, 1176, 1872, 2115, 2139, 3021, 3279
ZrmI	AGTACT	2 cut(s)	1438, 3370
Zsp2I	ATGCAT	2 cut(s)	1701, 2533

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.