Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0008684

Physical Location & Seq

Genomic Coordinates Forward (+)

21666350 .. 21673913

Gene Structure 7564 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1148100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4050 bp

ATGGGCAAACATGAGGAGTGGGCAGAGCCACCAAGTGGGCTGTTGCCGAATGGCCTATTGCCCAATGAAGCTGCATCGGTGATGAGAGTGCTCGACTCAGAGCGATGGTTGAAGGCGGAGGAGCGAACTGCAGAGCTTATTGCCTGCATTCAGCCCAACTCACCATCCGAAGAGCGCCGAAATGCCGTTGCCGATTATGTGCAGCGGCTCATCATGAAGTGCTTCCCCTGCCAGGTGTTCACTTTTGGGTCTGTACCCCTGAAAACGTATTTGCCTGATGGAGATATTGACCTGACAGCCTTCAGTAAGAGTCCAAATATGAAGGACACATGGGCCCATCAAGTTCGTGATATGCTCGAGAATGAGGAGAAGAACGAGAATGCTGAATTCCGTGTGAAAGAGGTTCAGTACATTCAGGCAGAAGTGAAGATAATCAAGTGCCTTGTGGAAAACATTGTTGTAGACATATCATTCAATCAGCTCGGTGGCCTGTGCACCCTCTGTTTCCTTGAGGAGGTTGATCATTTGATAAATCAAAATCATTTGTTCAAGCGCAGTATCATACTGATAAAGGCCTGGTGTTATTATGAGAGCCGAATACTGGGCGCTCATCATGGGCTTATCTCAACTTATGCGTTGGAAACTTTGGTTTTATACATATTTCATGTTTTCAACAACTCGTTTTCTGGACCACTTGAGGTTTTGTATCGTTTTCTGGTGTTTTTCAGTAAATTTGACTGGGATAATTTTTGTGTTAGCCTATGGGGTCCTGTCCCCATTAGTTCACTTCCAGATGTATCTGCGGAACCTCCTCGAAAAGATGGTGGAGAGTTACTACTGAGCAAATTGTTTCTTGATGCCTGTAGCTCAGTGTATGCTGTTTTTCCTGGTGGTCAAAAAACTCAGGGCCAACCTTTTGTTTCCAAACATTTTAATGTTATTGATCCTTTGAGAATCAACAACAACCTGGGACGCAGTGTTAGTAAAGGTAATTTTTTTAGGATACGCAGTGCATTTACATTTGGGGCTAAAAGGCTGGCCAGGTTGCTTGATTGTGCCAAAGAGGATCTATTTTTCGAAGTAAATCAGTTTTTTCTTAACACTTGGGATAGACATGGGAGTGGTCATCGACCTGATGCACCACGAAATGATTTGAGGCGCTTGAGACTTTCAAATCTGGACCATTTACATGGATCTGAGAATCTCAGGAATATTTCAAGCAACCATAAAAAGGAAAGTTCCTCTGGTCGAGATACTCAAAGTGGGGGGATGCATGGCTCCATTAATGTTCCCTCCCAGCATGCTAGTTATTCTTTAGAAAGCACCTCTGGTACCAGTAGTGTATCTACAGTAACTCATTCTCAAACTCAAAGGATTCATGGGAACACAAACCTCACTAGGGCCTCTGATATGACTAGAAAGGAAACGAATTCCGACCTGGGTGCACACATTGATAAAGGTCAGAGAAGTGCTAAACCTGATAACTTGGTGAATGACTTACAAGGGAGGTTTCTTTTTGCAAGGACACACTCTAGTCCTGAGCTTACTGATACATATGGTGAAGTTTCCACTCAAAGTAGGCGCTACAGAGCCCCAGAGAGTGGGAAAGGCCAAACTTCAACAAGGTTGGATAATAGTACGAGGAAAAACCTGGATTCTGATAGTGTGGCAAGCCACAGAAATAGATCTTCAACTGATGATCCTTCATCTGCTAGATCCATCTCATCCCGCCAAAGCCCTGATGCTGCTGTTGATTCAAATAACTACCATGATGAGTCAGGCATGAGTGCCGTTGCTGACGATTATGCTTCTATTTCGGCGGCACAAGGGATGCACCAGGAGGAGCAAGATCTTGTTAACATGATGGCATCTTCTGCAGCTCATGGTTTTAATGGGCAGGTTCATCTTCCACTCAATTTGGGTCCCGGTCACCTACCGCTTCCAATCCCACCTTCCATTCTTGCTTCTATGGGATATGCCCAGAGAAATATGGGTGGAATGGTTCCTACAAATTTCCCCTTGATGGAGACTCCTTGGGGAACAAATATGCAATTTCCGCAAGGTGTTGTGCCACCGTCGCTAGCCCCTTATTTCCCTGGCATGGGGTTGACCTCAAATCCTGAAGATTCAGTGGAACCTGGTAATGAAAATTTTGGATCTGTGGAAATGAACTCAGGCGAAACGGAGCTTGATTTCTGGCATCAGCAAGAGAGGGGATCTACTGGTGGGTTTGATCTGGATAATGGAAGTTATGAAATGCTTCAGGAAGATGACAAGCAACAGTCAACCTCAGCTGGTTATAACTTTCATCCATCATCTCGTGTAGGCACCTCAGGAAATTCTATGCAAGCTCAACCAAAGTCTACCAAAGAAAACCAAGAGTCGATGAGGGGGGAAGAGCGTGTGGATAATTTTCAATACCAAGATAACAGAGGTAATGAGGTTTACTTTGATGATCGAACTGTGAGTTCTAGATCTGCCACATATGCAAGTTCAGTGAGAAGTAAGACCTCCTCTGAGAGTTCTTGGGAAGGATCATCAGCAAGGGTCTCAAAGTCAACAAGGGAAAAACGTGGTAGGCGAAATGCTCATTCAGCAGCGCCATCTGCTGCATATGGGAAAGGTAAGAGTGTGTCCGAACATTCATCTACCCAGGCAGATGATGACAACAGAGATTGGAATTCACCTACAGCTTTAGGTGCCGAAACGGTAGAACAGAGCACAGGACCTCAACCTGTTGCTCCCTTGCATTTTCCAAGGCATCAAATGACCGGTTTTGAACAAACTCAGACAAGTGGATCAGATTCGATGATTCCTTTTGCTCCAGTGTTCTTAGGTCACGGCTCAAGACAGAGAGCTACAAATGATTCTGGAATGCTTACATTTTATCCTACGGGCCCTCCAGTTCCATTTGTTACAATGCTTCCTTATAATTATTTCTCGTCAGAAACAGGAACTTCAGATGTATCAACAAGCCAATTTAGCAGAGAAGAGGGAGCAGATAATAGTGATTCTGGTCAGAATTTTGATTCGTCTGAGGGAGCTGATCAACCTGAGGTGTTAAGTACTTCTAGCTCTATGGGAAGGGTAGCTCCTATTGAGCCGTCAGAGCATAAATCTGACATTCTTCACAGTGACTTCTCTAGCCATTGGCAGAATCTGCAATATGGACGGTTTTGCCAAACTTCACGGCACCCTTCACCTGTCGTTTATCCTTCACCAGTTATGGTGCCCCCTGCTTACTTACAAGGAAGATTTCCGTGGGATGGTCCCGGGAGACCTCTTTCAGCCAACGTCAATCTCTTCACTCAGCTTATGGGTTATGGACCTCGACTGGTCCCTGTTGCTCCTCTCCAGTCTGTTCCTAACAGGCCTGCTGGTGGTTATCAACGTTATGCAGATGAGATTCCAAGATATCGTGCTGGGACTGGGACCTACCTGCCAAATCCTAAGGTTTCTGTACGGGACCGGCCTTCAAATACGAGAAGGGGGAATTACAATTATGATAGAAATGACCACCACGGTGATAGAGAAGGGAACTGGAATACCAATTCAAAGTCACGAGCTTCTGGGCGCAACCACAGTCGCGGTCAAGCTGAGAAGCAAAATTCAAGAGTAGACCGTTTGGCAGCTAGTGAGAGCAGAGCTGAAAGGTCATGGAGTTCAAATAGGCAGGACTCATTACCGTCATATCAATCTCAAAATGGTCCTATCCGTGCAAACACTGCACAGAGTGGTTCGACCAATCTTGCATATGGCATGTATCCGGTACCAGCCATGAACCCTGGTGGGGTATCATCAAATGGCCCTTCCATGCCACCTGTTGTCATGCTGTATCCTTATGATCATAATGCTGGCTACGGGCCACCTACAGATCAACTTGAGTTTGGTTCTCTTGGACCAGTGGGATTCTCGGGTTTGAATGAAGCACAGCTAAATGAAGGGAGCCGGATGAATGGGGTATTTGATGAACAAAGGTTTCATGGTGGCTCTACTCAACGATCTTCACCTGATCAGCCTTCTTCACCCCACCTCCAAAGGGGAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004652 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006396 GO:0006399 GO:0006401 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016074 GO:0016075 GO:0016077 GO:0016078 GO:0016740 GO:0016772 GO:0016779 GO:0019439 GO:0031123 GO:0031499 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0043021 GO:0043023 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043629 GO:0043630 GO:0043631 GO:0043632 GO:0043633 GO:0043634 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044877 GO:0046483 GO:0046700 GO:0070013 GO:0070566 GO:0071025 GO:0071027 GO:0071029 GO:0071035 GO:0071046 GO:0071704 GO:0090304 GO:1901360 GO:1901361 GO:1901575 GO:1990817

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NTP_transf_2

Protein Analysis

1350

Amino Acids

148.88

Weight (kDa)

6.08

Isoelectric Point (pI)

49.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MTPAP-like_central	PF22600	44 - 164	3.4e-10	Poly(A) RNA polymerase, mitochondrial-like, central palm domain
PAP-OAS1	PF26180	177 - 369	7.8e-92	PAP/OAS1 substrate-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008684)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61690 AT3G61690 AT3G61690
fragaria_vesca	FvH4_7g16250 FvH4_7g16250 FvH4_7g16250 FvH4_7g16250
malus_domestica	MD01G1079200.v1.1 MD07G1148100.v1.1
prunus_persica	Prupe.2G186200_v2.0.a1 Prupe.2G186200_v2.0.a1
pyrus_communis	pycom01g10750 pycom07g14710
rosa_chinensis	RchiOBHm_Chr1g0359271
rosa_laevigata	RLG00000027887
rosa_multiflora	Rmu_ssc0000135.1_g000035
rosa_roxburghii	Rroxscaffold_4G00297170
rosa_rugosa	Rorug01G0269000
rosa_samantha	Rh1AG283000 Rh1BG249200 Rh1CG267000 Rh1DG278100
rosa_wichuraiana	Rw1G025120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	2301, 2931
Acc36I	ACCTGC	2 cut(s)	1888, 3447
Acc65I	GGTACC	2 cut(s)	1331, 3769
AccB1I	GGYRCC	6 cut(s)	1331, 2327, 2699, 3192, 3229, 3769
AccB7I	CCANNNNNTGG	2 cut(s)	35, 1601
AccI	GTMKAC	3 cut(s)	462, 2363, 3618
AccII	CGCG	1 cut(s)	3588
AciI	CCGC	8 cut(s)	116, 205, 803, 1729, 1820, 1937, 2057, 3588
AclI	AACGTT	1 cut(s)	3391
AclWI	GGATC	9 cut(s)	938, 1074, 1201, 1694, 1710, 2164, 2224, 2542, 2806
AcoI	YGGCCR	1 cut(s)	1038
AcsI	RAATTY	9 cut(s)	386, 731, 1429, 2011, 2149, 2338, 2680, 3022, 3607
AcuI	CTGAAG	4 cut(s)	286, 2142, 2246, 2943
AdeI	CACNNNGTG	2 cut(s)	35, 3734
AfaI	GTAC	7 cut(s)	255, 410, 1333, 1639, 3067, 3462, 3771
AgeI	ACCGGT	1 cut(s)	2771
AjuI	GAANNNNNNNTTGG	2 cut(s)	1936, 1968
AleI	CACNNNNGTG	1 cut(s)	3522
Alw21I	GWGCWC	4 cut(s)	93, 497, 1447, 2723
Alw26I	GTCTC	4 cut(s)	1159, 2021, 2554, 3271
Alw44I	GTGCAC	2 cut(s)	493, 1443
AlwI	GGATC	9 cut(s)	938, 1074, 1201, 1694, 1710, 2164, 2224, 2542, 2806
AlwNI	CAGNNNCTG	1 cut(s)	3160
Ama87I	CYCGRG	3 cut(s)	356, 3272, 3913
ApaI	GGGCCC	2 cut(s)	337, 2900
ApaLI	GTGCAC	2 cut(s)	493, 1443
ApeKI	GCWGC	7 cut(s)	71, 202, 1745, 1877, 2597, 2609, 3629
ApoI	RAATTY	9 cut(s)	386, 731, 1429, 2011, 2149, 2338, 2680, 3022, 3607
AseI	ATTAAT	1 cut(s)	1284
AsiGI	ACCGGT	1 cut(s)	2771
Asp700I	GAANNNNTTC	2 cut(s)	221, 2259
Asp718I	GGTACC	2 cut(s)	1331, 3769
AspLEI	GCGC	7 cut(s)	177, 555, 608, 1161, 1584, 2602, 3576
AsuC2I	CCSGG	3 cut(s)	1926, 3273, 3274
AsuII	TTCGAA	1 cut(s)	1077
AsuNHI	GCTAGC	1 cut(s)	2080
AvaI	CYCGRG	3 cut(s)	356, 3272, 3913
AxyI	CCTNAGG	3 cut(s)	2332, 3054, 3450
BaeGI	GKGCMC	5 cut(s)	337, 497, 1447, 2900, 3234
BalI	TGGCCA	1 cut(s)	1040
BanI	GGYRCC	6 cut(s)	1331, 2327, 2699, 3192, 3229, 3769
BanII	GRGCYC	3 cut(s)	337, 1594, 2900
BauI	CACGAG	2 cut(s)	2319, 3561
Bbv12I	GWGCWC	4 cut(s)	93, 497, 1447, 2723
BbvCI	CCTCAGC	1 cut(s)	2290
BbvI	GCAGC	7 cut(s)	58, 214, 1732, 1889, 2596, 2609, 3641
BceAI	ACGGC	5 cut(s)	170, 1775, 2857, 3088, 3206
BcgI	CGANNNNNNTGC	2 cut(s)	1424, 1458
BciVI	GTATCC	3 cut(s)	996, 3774, 3846
BclI	TGATCA	4 cut(s)	520, 3046, 3844, 4012
BcnI	CCSGG	3 cut(s)	1926, 3273, 3274
BcoDI	GTCTC	4 cut(s)	1159, 2021, 2554, 3271
BfmI	CTRYAG	7 cut(s)	129, 862, 1347, 1585, 1875, 2688, 3870
BfoI	RGCGCY	5 cut(s)	178, 609, 1162, 1585, 2603
BfuAI	ACCTGC	2 cut(s)	1888, 3447
BfuI	GTATCC	3 cut(s)	996, 3774, 3846
BglII	AGATCT	3 cut(s)	1685, 1849, 2474
BisI	GCNGC	9 cut(s)	72, 203, 206, 1746, 1821, 1878, 2598, 2610, 3630
BlsI	GCNGC	9 cut(s)	73, 204, 207, 1747, 1822, 1879, 2599, 2611, 3631
BmcAI	AGTACT	1 cut(s)	3067
BmeT110I	CYCGRG	3 cut(s)	356, 3272, 3913
BmrI	ACTGGG	3 cut(s)	611, 748, 3438
BmsI	GCATC	9 cut(s)	83, 847, 1126, 1260, 1732, 1821, 1877, 2209, 2770
BmtI	GCTAGC	1 cut(s)	2084
BmuI	ACTGGG	3 cut(s)	611, 748, 3438
BpmI	CTGGAG	3 cut(s)	2808, 2886, 3338
Bpu10I	CCTNAGC	2 cut(s)	1539, 2290
Bpu14I	TTCGAA	1 cut(s)	1077
BpuEI	CTTGAG	5 cut(s)	530, 716, 1183, 2830, 3902
BpuMI	CCSGG	3 cut(s)	1926, 3273, 3274
BsaI	GGTCTC	2 cut(s)	2554, 3271
BsaWI	WCCGGW	2 cut(s)	2771, 3766
BsaXI	ACNNNNNCTCC	4 cut(s)	2884, 2914, 4017, 4047
Bse118I	RCCGGY	2 cut(s)	2771, 3468
Bse21I	CCTNAGG	3 cut(s)	2332, 3054, 3450
BseGI	GGATG	7 cut(s)	164, 1275, 1724, 1836, 2308, 3271, 3957
BseRI	GAGGAG	8 cut(s)	29, 134, 380, 527, 801, 1856, 2503, 3339
BseSI	GKGCMC	5 cut(s)	337, 497, 1447, 2900, 3234
BseXI	GCAGC	7 cut(s)	58, 214, 1732, 1889, 2596, 2609, 3641
BseYI	CCCAGC	2 cut(s)	1296, 3422
BsgI	GTGCAG	2 cut(s)	221, 3711
Bsh1236I	CGCG	1 cut(s)	3588
BshNI	GGYRCC	6 cut(s)	1331, 2327, 2699, 3192, 3229, 3769
BshTI	ACCGGT	1 cut(s)	2771
BsiHKAI	GWGCWC	4 cut(s)	93, 497, 1447, 2723
BsiHKCI	CYCGRG	3 cut(s)	356, 3272, 3913
BsiSI	CCGG	6 cut(s)	1926, 2772, 3273, 3469, 3767, 3949
BslFI	GGGAC	8 cut(s)	758, 984, 1908, 3255, 3323, 3439, 3445, 3479
BsmAI	GTCTC	4 cut(s)	1159, 2021, 2554, 3271
BsmFI	GGGAC	8 cut(s)	758, 984, 1908, 3255, 3323, 3439, 3445, 3479
BsmI	GAATGC	3 cut(s)	147, 385, 2880
Bso31I	GGTCTC	2 cut(s)	2554, 3271
BsoBI	CYCGRG	3 cut(s)	356, 3272, 3913
Bsp119I	TTCGAA	1 cut(s)	1077
Bsp120I	GGGCCC	2 cut(s)	333, 2896
Bsp1286I	GDGCHC	8 cut(s)	93, 337, 497, 1447, 1594, 2723, 2900, 3234
BspACI	CCGC	8 cut(s)	116, 205, 803, 1729, 1820, 1937, 2057, 3588
BspFNI	CGCG	1 cut(s)	3588
BspHI	TCATGA	1 cut(s)	213
BspMAI	CTGCAG	2 cut(s)	133, 1879
BspMI	ACCTGC	2 cut(s)	1888, 3447
BspOI	GCTAGC	1 cut(s)	2084
BspPI	GGATC	9 cut(s)	938, 1074, 1201, 1694, 1710, 2164, 2224, 2542, 2806
BspQI	GCTCTTC	2 cut(s)	165, 2391
BspT104I	TTCGAA	1 cut(s)	1077
BspT107I	GGYRCC	6 cut(s)	1331, 2327, 2699, 3192, 3229, 3769
BspTNI	GGTCTC	2 cut(s)	2554, 3271
BsrFI	RCCGGY	2 cut(s)	2771, 3468
BssAI	RCCGGY	2 cut(s)	2771, 3468
BssSI	CACGAG	2 cut(s)	2319, 3561
BssT1I	CCWWGG	2 cut(s)	2033, 2756
Bst2BI	CACGAG	2 cut(s)	2319, 3561
Bst6I	CTCTTC	4 cut(s)	165, 2391, 2985, 3308
BstAPI	GCANNNNNTGC	3 cut(s)	1874, 3160, 3725
BstBI	TTCGAA	1 cut(s)	1077
BstC8I	GCNNGC	8 cut(s)	145, 1038, 1302, 1672, 2082, 2349, 3375, 3856
BstDSI	CCRYGG	2 cut(s)	3260, 3520
BstEII	GGTNACC	1 cut(s)	1928
BstENI	CCTNNNNNAGG	1 cut(s)	512
BstF5I	GGATG	7 cut(s)	164, 1275, 1724, 1836, 2308, 3271, 3957
BstFNI	CGCG	1 cut(s)	3588
BstH2I	RGCGCY	5 cut(s)	178, 609, 1162, 1585, 2603
BstHHI	GCGC	7 cut(s)	177, 555, 608, 1161, 1584, 2602, 3576
BstMAI	GTCTC	4 cut(s)	1159, 2021, 2554, 3271
BstNSI	RCATGY	2 cut(s)	1304, 3763
BstPI	GGTNACC	1 cut(s)	1928
BstSFI	CTRYAG	7 cut(s)	129, 862, 1347, 1585, 1875, 2688, 3870
BstSLI	GKGCMC	5 cut(s)	337, 497, 1447, 2900, 3234
BstUI	CGCG	1 cut(s)	3588
BstV1I	GCAGC	7 cut(s)	58, 214, 1732, 1889, 2596, 2609, 3641
BstX2I	RGATCY	8 cut(s)	1066, 1193, 1685, 1715, 1849, 2156, 2216, 2474
BstXI	CCANNNNNNTGG	1 cut(s)	1190
BstYI	RGATCY	8 cut(s)	1066, 1193, 1685, 1715, 1849, 2156, 2216, 2474
Bsu36I	CCTNAGG	3 cut(s)	2332, 3054, 3450
BsuI	GTATCC	3 cut(s)	996, 3774, 3846
BtgI	CCRYGG	2 cut(s)	3260, 3520
BtgZI	GCGATG	1 cut(s)	118
BtsCI	GGATG	7 cut(s)	164, 1275, 1724, 1836, 2308, 3271, 3957
BtsI	GCAGTG	3 cut(s)	982, 1015, 3723
BtsIMutI	CAGTG	9 cut(s)	876, 982, 1015, 2136, 2502, 2832, 3139, 3723, 3909
BveI	ACCTGC	2 cut(s)	1888, 3447
Cac8I	GCNNGC	8 cut(s)	145, 1038, 1302, 1672, 2082, 2349, 3375, 3856
CaiI	CAGNNNCTG	1 cut(s)	3160
CciI	TCATGA	1 cut(s)	213
CfoI	GCGC	7 cut(s)	177, 555, 608, 1161, 1584, 2602, 3576
Cfr10I	RCCGGY	2 cut(s)	2771, 3468
Cfr9I	CCCGGG	1 cut(s)	3272
CseI	GACGC	1 cut(s)	981
CsiI	ACCWGGT	1 cut(s)	2137
Csp6I	GTAC	7 cut(s)	254, 409, 1332, 1638, 3066, 3461, 3770
CspAI	ACCGGT	1 cut(s)	2771
CspCI	CAANNNNNGTGG	2 cut(s)	1899, 1934
CviQI	GTAC	7 cut(s)	254, 409, 1332, 1638, 3066, 3461, 3770
DraIII	CACNNNGTG	2 cut(s)	35, 3734
EaeI	YGGCCR	1 cut(s)	1038
Eam1104I	CTCTTC	4 cut(s)	165, 2391, 2985, 3308
EarI	CTCTTC	4 cut(s)	165, 2391, 2985, 3308
EciI	GGCGGA	1 cut(s)	131
Eco130I	CCWWGG	2 cut(s)	2033, 2756
Eco147I	AGGCCT	2 cut(s)	575, 3373
Eco24I	GRGCYC	3 cut(s)	337, 1594, 2900
Eco31I	GGTCTC	2 cut(s)	2554, 3271
Eco32I	GATATC	1 cut(s)	3416
Eco57I	CTGAAG	4 cut(s)	286, 2142, 2246, 2943
Eco81I	CCTNAGG	3 cut(s)	2332, 3054, 3450
Eco88I	CYCGRG	3 cut(s)	356, 3272, 3913
Eco91I	GGTNACC	1 cut(s)	1928
EcoNI	CCTNNNNNAGG	1 cut(s)	512
EcoO109I	RGGNCCY	6 cut(s)	767, 1401, 1922, 2726, 2897, 3432
EcoO65I	GGTNACC	1 cut(s)	1928
EcoRI	GAATTC	3 cut(s)	386, 1429, 2680
EcoRV	GATATC	1 cut(s)	3416
EcoT14I	CCWWGG	2 cut(s)	2033, 2756
EcoT22I	ATGCAT	1 cut(s)	1275
EcoT38I	GRGCYC	3 cut(s)	337, 1594, 2900
ErhI	CCWWGG	2 cut(s)	2033, 2756
FaqI	GGGAC	8 cut(s)	758, 984, 1908, 3255, 3323, 3439, 3445, 3479
FauI	CCCGC	1 cut(s)	1736
FauNDI	CATATG	4 cut(s)	1555, 2485, 2614, 3754
FbaI	TGATCA	4 cut(s)	520, 3046, 3844, 4012
FblI	GTMKAC	3 cut(s)	462, 2363, 3618
Fnu4HI	GCNGC	9 cut(s)	72, 203, 206, 1746, 1821, 1878, 2598, 2610, 3630
FokI	GGATG	7 cut(s)	151, 1282, 1711, 1843, 2295, 3278, 3964
FriOI	GRGCYC	3 cut(s)	337, 1594, 2900
Fsp4HI	GCNGC	9 cut(s)	72, 203, 206, 1746, 1821, 1878, 2598, 2610, 3630
GlaI	GCGC	7 cut(s)	176, 554, 607, 1160, 1583, 2601, 3575
GluI	GCNGC	9 cut(s)	72, 203, 206, 1746, 1821, 1878, 2598, 2610, 3630
GsaI	CCCAGC	2 cut(s)	1300, 3426
GsuI	CTGGAG	3 cut(s)	2808, 2886, 3338
HaeII	RGCGCY	5 cut(s)	178, 609, 1162, 1585, 2603
HapII	CCGG	6 cut(s)	1926, 2772, 3273, 3469, 3767, 3949
HgaI	GACGC	1 cut(s)	981
HhaI	GCGC	7 cut(s)	177, 555, 608, 1161, 1584, 2602, 3576
Hin6I	GCGC	7 cut(s)	175, 553, 606, 1159, 1582, 2600, 3574
HinP1I	GCGC	7 cut(s)	175, 553, 606, 1159, 1582, 2600, 3574
HincII	GTYRAC	4 cut(s)	1858, 2109, 2286, 2559
HindII	GTYRAC	4 cut(s)	1858, 2109, 2286, 2559
HpaI	GTTAAC	1 cut(s)	1858
HpaII	CCGG	6 cut(s)	1926, 2772, 3273, 3469, 3767, 3949
Hpy99I	CGWCG	1 cut(s)	2080
HpyCH4IV	ACGT	4 cut(s)	266, 2572, 3294, 3391
HpySE526I	ACGT	4 cut(s)	266, 2572, 3294, 3391
HspAI	GCGC	7 cut(s)	175, 553, 606, 1159, 1582, 2600, 3574
KflI	GGGWCCC	1 cut(s)	1922
KpnI	GGTACC	2 cut(s)	1335, 3773
Ksp22I	TGATCA	4 cut(s)	520, 3046, 3844, 4012
KspAI	GTTAAC	1 cut(s)	1858
LguI	GCTCTTC	2 cut(s)	165, 2391
Lsp1109I	GCAGC	7 cut(s)	58, 214, 1732, 1889, 2596, 2609, 3641
LweI	GCATC	9 cut(s)	83, 847, 1126, 1260, 1732, 1821, 1877, 2209, 2770
MabI	ACCWGGT	1 cut(s)	2137
MaeII	ACGT	4 cut(s)	266, 2572, 3294, 3391
MaeIII	GTNAC	7 cut(s)	831, 1351, 1928, 2837, 2914, 3134, 3558
MflI	RGATCY	8 cut(s)	1066, 1193, 1685, 1715, 1849, 2156, 2216, 2474
MhlI	GDGCHC	8 cut(s)	93, 337, 497, 1447, 1594, 2723, 2900, 3234
MlsI	TGGCCA	1 cut(s)	1040
MluNI	TGGCCA	1 cut(s)	1040
MlyI	GAGTC	6 cut(s)	89, 319, 1784, 2023, 2390, 3671
MmeI	TCCRAC	3 cut(s)	618, 1458, 1608
Mox20I	TGGCCA	1 cut(s)	1040
Mph1103I	ATGCAT	1 cut(s)	1275
MroXI	GAANNNNTTC	2 cut(s)	221, 2259
MscI	TGGCCA	1 cut(s)	1040
MseI	TTAA	6 cut(s)	933, 1098, 1284, 1857, 1890, 3062
MslI	CAYNNNNRTG	4 cut(s)	933, 1119, 1188, 3522
Msp20I	TGGCCA	1 cut(s)	1040
MspA1I	CMGCKG	2 cut(s)	205, 2294
MspI	CCGG	6 cut(s)	1926, 2772, 3273, 3469, 3767, 3949
Mva1269I	GAATGC	3 cut(s)	147, 385, 2880
MvnI	CGCG	1 cut(s)	3588
NciI	CCSGG	3 cut(s)	1926, 3273, 3274
NdeI	CATATG	4 cut(s)	1555, 2485, 2614, 3754
NheI	GCTAGC	1 cut(s)	2080
NmuCI	GTSAC	4 cut(s)	1928, 2837, 3134, 3558
NsiI	ATGCAT	1 cut(s)	1275
NspI	RCATGY	2 cut(s)	1304, 3763
NspV	TTCGAA	1 cut(s)	1077
OliI	CACNNNNGTG	1 cut(s)	3522
PaeI	GCATGC	1 cut(s)	1304
PaeR7I	CTCGAG	1 cut(s)	356
PagI	TCATGA	1 cut(s)	213
PceI	AGGCCT	2 cut(s)	575, 3373
PciSI	GCTCTTC	2 cut(s)	165, 2391
PcsI	WCGNNNNNNNCGW	1 cut(s)	2578
PctI	GAATGC	3 cut(s)	147, 385, 2880
PdmI	GAANNNNTTC	2 cut(s)	221, 2259
PflMI	CCANNNNNTGG	2 cut(s)	35, 1601
PinAI	ACCGGT	1 cut(s)	2771
PkrI	GCNGC	9 cut(s)	73, 204, 207, 1747, 1822, 1879, 2599, 2611, 3631
PleI	GAGTC	6 cut(s)	89, 318, 1783, 2023, 2389, 3671
PpsI	GAGTC	6 cut(s)	89, 318, 1783, 2023, 2389, 3671
PpuMI	RGGWCCY	4 cut(s)	767, 1922, 2726, 3432
PshBI	ATTAAT	1 cut(s)	1284
PsiI	TTATAA	2 cut(s)	2301, 2931
Psp1406I	AACGTT	1 cut(s)	3391
Psp5II	RGGWCCY	4 cut(s)	767, 1922, 2726, 3432
PspEI	GGTNACC	1 cut(s)	1928
PspFI	CCCAGC	2 cut(s)	1296, 3422
PspOMI	GGGCCC	2 cut(s)	333, 2896
PspPPI	RGGWCCY	4 cut(s)	767, 1922, 2726, 3432
PstI	CTGCAG	2 cut(s)	133, 1879
PstNI	CAGNNNCTG	1 cut(s)	3160
PsuI	RGATCY	8 cut(s)	1066, 1193, 1685, 1715, 1849, 2156, 2216, 2474
PvuII	CAGCTG	1 cut(s)	2294
RsaI	GTAC	7 cut(s)	255, 410, 1333, 1639, 3067, 3462, 3771
RsaNI	GTAC	7 cut(s)	254, 409, 1332, 1638, 3066, 3461, 3770
RseI	CAYNNNNRTG	4 cut(s)	933, 1119, 1188, 3522
SapI	GCTCTTC	2 cut(s)	165, 2391
SaqAI	TTAA	6 cut(s)	933, 1098, 1284, 1857, 1890, 3062
SatI	GCNGC	9 cut(s)	72, 203, 206, 1746, 1821, 1878, 2598, 2610, 3630
ScaI	AGTACT	1 cut(s)	3067
SchI	GAGTC	6 cut(s)	89, 319, 1784, 2023, 2390, 3671
SduI	GDGCHC	8 cut(s)	93, 337, 497, 1447, 1594, 2723, 2900, 3234
SexAI	ACCWGGT	1 cut(s)	2137
SfaNI	GCATC	9 cut(s)	83, 847, 1126, 1260, 1732, 1821, 1877, 2209, 2770
SfcI	CTRYAG	7 cut(s)	129, 862, 1347, 1585, 1875, 2688, 3870
Sfr274I	CTCGAG	1 cut(s)	356
SfuI	TTCGAA	1 cut(s)	1077
SlaI	CTCGAG	1 cut(s)	356
SmaI	CCCGGG	1 cut(s)	3274
SmiMI	CAYNNNNRTG	4 cut(s)	933, 1119, 1188, 3522
SmlI	CTYRAG	6 cut(s)	356, 509, 695, 1162, 2845, 3881
SmoI	CTYRAG	6 cut(s)	356, 509, 695, 1162, 2845, 3881
SphI	GCATGC	1 cut(s)	1304
SseBI	AGGCCT	2 cut(s)	575, 3373
SsiI	CCGC	8 cut(s)	116, 205, 803, 1729, 1820, 1937, 2057, 3588
SspI	AATATT	1 cut(s)	1213
StuI	AGGCCT	2 cut(s)	575, 3373
StyI	CCWWGG	2 cut(s)	2033, 2756
TaiI	ACGT	4 cut(s)	269, 2575, 3297, 3394
TatI	WGTACW	2 cut(s)	408, 3065
TauI	GCSGC	2 cut(s)	208, 1823
Tru1I	TTAA	6 cut(s)	933, 1098, 1284, 1857, 1890, 3062
Tru9I	TTAA	6 cut(s)	933, 1098, 1284, 1857, 1890, 3062
TscAI	CASTG	9 cut(s)	876, 982, 1015, 2136, 2502, 2832, 3139, 3730, 3909
TseFI	GTSAC	4 cut(s)	1928, 2837, 3134, 3558
TseI	GCWGC	7 cut(s)	71, 202, 1745, 1877, 2597, 2609, 3629
Tsp45I	GTSAC	4 cut(s)	1928, 2837, 3134, 3558
TspGWI	ACGGA	4 cut(s)	380, 2198, 3249, 3704
TspMI	CCCGGG	1 cut(s)	3272
TspRI	CASTG	9 cut(s)	876, 982, 1015, 2136, 2502, 2832, 3139, 3730, 3909
Van91I	CCANNNNNTGG	2 cut(s)	35, 1601
VneI	GTGCAC	2 cut(s)	493, 1443
VspI	ATTAAT	1 cut(s)	1284
XagI	CCTNNNNNAGG	1 cut(s)	512
XapI	RAATTY	9 cut(s)	386, 731, 1429, 2011, 2149, 2338, 2680, 3022, 3607
XbaI	TCTAGA	1 cut(s)	2471
XceI	RCATGY	2 cut(s)	1304, 3763
XhoI	CTCGAG	1 cut(s)	356
XmaI	CCCGGG	1 cut(s)	3272
XmiI	GTMKAC	3 cut(s)	462, 2363, 3618
XmnI	GAANNNNTTC	2 cut(s)	221, 2259
ZrmI	AGTACT	1 cut(s)	3067
Zsp2I	ATGCAT	1 cut(s)	1275

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.