Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0008684

Physical Location & Seq

Genomic Coordinates Reverse (-)

16367305 .. 16371140

Gene Structure 3836 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027887

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGGGCGAACATGAAGGGTGGGCACAGCCAGCAAGTGGGCTATTGCCGAATGGCCTATTGCCCAATGAAGCCGCCTCCGTGATGCGAGTGCTGGATTCGGAGCGATGGACCAAGGCGGAGGAGAGAACTGCAGAGCTTATTGCCTGCATTCAGCCCAATCCACCCTCAGAAGAGCGCCGAAATGCCGTTGCCGATTATGTGCAGCGGCTTATCATGAAGTGCTTCCCATGCGAGGTGTTCACTTTTGGGTCTGTGCCCCTGAAGACTTATCTGCCTGATGGAGATATTGACCTTACAGCCTTCAGCAAGACTCAAAGTTTGAAAGACTCATGGGCCCATCAGGTTCGTGATTTGCTGGAGAATGAGGAGAAGAATGAGAATGCTGAATTCCGTGTCAAAGAGGTTCAATACATTCAAGCAGAAGTAAAGATAATCAAGTGCCTTGTGGAAAACATTGTAGTTGACATATCCTTTAATCAGCTGGGAGGCTTGTGCACCCTTTGTTTCCTTGAGGAGGTCGATCATCTCATAAATCAAAATCATTTGTTCAAGCGTAGTATTATACTGATAAAGGCCTGGTGTTATTATGAGAGCCGAATACTAGGCGCTCACCATGGACTTATCTCCACCTACGCTTTGGAAACATTGGTTTTATACATTTTTCATGTTTTCAACAACTCCTTTACTGGACCACTTGAGGTCTTGTATCGCTTTCTAGAGTTCTTTAGTAAGTTTGACTGGGAGAACTTTTGTGTTAGCTTATGGGGTCCTGTGCCCATTAGTTCTCTTCCAGATGTAACTGCCGAACCTCCTCGAAAAGATGGTGGAAAGTTATTACTAAGCAAAGGGTTTCTTGATGCGTGTAGCGCAGTGTATGCTGTCGTCCCTGGCGGTCAAGAAAATGCTTTTGTTTCCAAACATTTTAATGTTATTGATCCTTTGAGAATCAACAACAACCTTGGACGTAGTGTTAGTAAAGGTACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004652 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006396 GO:0006399 GO:0006401 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016074 GO:0016075 GO:0016077 GO:0016078 GO:0016740 GO:0016772 GO:0016779 GO:0019439 GO:0031123 GO:0031499 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0043021 GO:0043023 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043629 GO:0043630 GO:0043631 GO:0043632 GO:0043633 GO:0043634 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044877 GO:0046483 GO:0046700 GO:0070013 GO:0070566 GO:0071025 GO:0071027 GO:0071029 GO:0071035 GO:0071046 GO:0071704 GO:0090304 GO:1901360 GO:1901361 GO:1901575 GO:1990817

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NTP_transf_2

Protein Analysis

329

Amino Acids

37.0

Weight (kDa)

5.37

Isoelectric Point (pI)

35.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MTPAP-like_central	PF22600	44 - 164	5.2e-11	Poly(A) RNA polymerase, mitochondrial-like, central palm domain
PAP-OAS1	PF26180	177 - 327	1.6e-75	PAP/OAS1 substrate-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008684)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61690 AT3G61690 AT3G61690
fragaria_vesca	FvH4_7g16250 FvH4_7g16250 FvH4_7g16250 FvH4_7g16250
malus_domestica	MD01G1079200.v1.1 MD07G1148100.v1.1
prunus_persica	Prupe.2G186200_v2.0.a1 Prupe.2G186200_v2.0.a1
pyrus_communis	pycom01g10750 pycom07g14710
rosa_chinensis	RchiOBHm_Chr1g0359271
rosa_laevigata	RLG00000027887
rosa_multiflora	Rmu_ssc0000135.1_g000035
rosa_roxburghii	Rroxscaffold_4G00297170
rosa_rugosa	Rorug01G0269000
rosa_samantha	Rh1AG283000 Rh1BG249200 Rh1CG267000 Rh1DG278100
rosa_wichuraiana	Rw1G025120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	35
AciI	CCGC	4 cut(s)	72, 116, 205, 891
AclWI	GGATC	1 cut(s)	929
AcsI	RAATTY	1 cut(s)	386
AcuI	CTGAAG	2 cut(s)	281, 286
AfaI	GTAC	1 cut(s)	982
AfiI	CCNNNNNNNGG	3 cut(s)	35, 232, 514
AgsI	TTSAA	5 cut(s)	322, 407, 416, 550, 673
AjnI	CCWGG	2 cut(s)	575, 886
AluBI	AGCT	3 cut(s)	136, 481, 759
AluI	AGCT	3 cut(s)	136, 481, 759
Alw21I	GWGCWC	1 cut(s)	497
Alw44I	GTGCAC	1 cut(s)	493
AlwI	GGATC	1 cut(s)	929
AoxI	GGCC	3 cut(s)	52, 333, 573
ApaI	GGGCCC	1 cut(s)	337
ApaLI	GTGCAC	1 cut(s)	493
ApeKI	GCWGC	1 cut(s)	202
ApoI	RAATTY	1 cut(s)	386
ArsI	GACNNNNNNTTYG	2 cut(s)	301, 333
Asp700I	GAANNNNTTC	1 cut(s)	221
AspLEI	GCGC	3 cut(s)	177, 608, 869
AspS9I	GGNCC	5 cut(s)	108, 333, 334, 689, 767
AsuHPI	GGTGA	1 cut(s)	602
AvaII	GGWCC	3 cut(s)	108, 689, 767
BaeGI	GKGCMC	5 cut(s)	25, 258, 337, 497, 777
BanII	GRGCYC	1 cut(s)	337
BbsI	GAAGAC	1 cut(s)	269
Bbv12I	GWGCWC	1 cut(s)	497
BbvI	GCAGC	1 cut(s)	214
BccI	CCATC	4 cut(s)	99, 272, 345, 815
BceAI	ACGGC	1 cut(s)	170
BciT130I	CCWGG	2 cut(s)	577, 888
BfaI	CTAG	2 cut(s)	602, 716
BfmI	CTRYAG	1 cut(s)	129
BfoI	RGCGCY	2 cut(s)	178, 609
BisI	GCNGC	3 cut(s)	72, 203, 206
BlsI	GCNGC	3 cut(s)	73, 204, 207
Bme1390I	CCNGG	2 cut(s)	577, 888
Bme18I	GGWCC	3 cut(s)	108, 689, 767
BmgT120I	GGNCC	5 cut(s)	108, 333, 334, 689, 767
BmiI	GGNNCC	2 cut(s)	335, 768
BmrFI	CCNGG	2 cut(s)	577, 888
BmrI	ACTGGG	1 cut(s)	748
BmsI	GCATC	2 cut(s)	72, 847
BmuI	ACTGGG	1 cut(s)	748
BpiI	GAAGAC	1 cut(s)	269
BpmI	CTGGAG	1 cut(s)	377
BpuEI	CTTGAG	2 cut(s)	530, 716
BsaJI	CCNNGG	4 cut(s)	111, 613, 886, 958
Bsc4I	CCNNNNNNNGG	3 cut(s)	35, 232, 514
Bse1I	ACTGG	2 cut(s)	691, 743
BseBI	CCWGG	2 cut(s)	577, 888
BseDI	CCNNGG	4 cut(s)	111, 613, 886, 958
BseLI	CCNNNNNNNGG	3 cut(s)	35, 232, 514
BseMII	CTCAG	1 cut(s)	180
BseNI	ACTGG	2 cut(s)	691, 743
BseRI	GAGGAG	4 cut(s)	134, 380, 527, 801
BseSI	GKGCMC	5 cut(s)	25, 258, 337, 497, 777
BseXI	GCAGC	1 cut(s)	214
BseYI	CCCAGC	1 cut(s)	481
BsgI	GTGCAG	1 cut(s)	221
BshFI	GGCC	3 cut(s)	54, 335, 575
BsiHKAI	GWGCWC	1 cut(s)	497
BslFI	GGGAC	1 cut(s)	869
BslI	CCNNNNNNNGG	3 cut(s)	35, 232, 514
BsmFI	GGGAC	1 cut(s)	869
BsmI	GAATGC	2 cut(s)	147, 385
BsnI	GGCC	3 cut(s)	54, 335, 575
Bsp120I	GGGCCC	1 cut(s)	333
Bsp1286I	GDGCHC	5 cut(s)	25, 258, 337, 497, 777
Bsp143I	GATC	2 cut(s)	520, 934
Bsp19I	CCATGG	1 cut(s)	613
BspACI	CCGC	4 cut(s)	72, 116, 205, 891
BspANI	GGCC	3 cut(s)	54, 335, 575
BspCNI	CTCAG	1 cut(s)	179
BspHI	TCATGA	1 cut(s)	213
BspLI	GGNNCC	2 cut(s)	335, 768
BspMAI	CTGCAG	1 cut(s)	133
BspPI	GGATC	1 cut(s)	929
BspQI	GCTCTTC	1 cut(s)	165
BsrI	ACTGG	2 cut(s)	691, 743
BssECI	CCNNGG	4 cut(s)	111, 613, 886, 958
BssMI	GATC	2 cut(s)	520, 934
BssT1I	CCWWGG	3 cut(s)	111, 613, 958
Bst2UI	CCWGG	2 cut(s)	577, 888
Bst6I	CTCTTC	2 cut(s)	165, 792
BstAPI	GCANNNNNTGC	1 cut(s)	875
BstC8I	GCNNGC	2 cut(s)	30, 145
BstDEI	CTNAG	2 cut(s)	166, 839
BstDSI	CCRYGG	1 cut(s)	613
BstENI	CCTNNNNNAGG	1 cut(s)	512
BstH2I	RGCGCY	2 cut(s)	178, 609
BstHHI	GCGC	3 cut(s)	177, 608, 869
BstKTI	GATC	2 cut(s)	523, 937
BstMBI	GATC	2 cut(s)	520, 934
BstMWI	GCNNNNNNNGC	4 cut(s)	29, 228, 866, 875
BstNI	CCWGG	2 cut(s)	577, 888
BstSCI	CCNGG	2 cut(s)	575, 886
BstSFI	CTRYAG	1 cut(s)	129
BstSLI	GKGCMC	5 cut(s)	25, 258, 337, 497, 777
BstV1I	GCAGC	1 cut(s)	214
BstV2I	GAAGAC	1 cut(s)	269
BsuRI	GGCC	3 cut(s)	54, 335, 575
BtgI	CCRYGG	1 cut(s)	613
BtgZI	GCGATG	1 cut(s)	118
BtsI	GCAGTG	1 cut(s)	876
BtsIMutI	CAGTG	1 cut(s)	876
Cac8I	GCNNGC	2 cut(s)	30, 145
CciI	TCATGA	1 cut(s)	213
CfoI	GCGC	3 cut(s)	177, 608, 869
Cfr13I	GGNCC	5 cut(s)	108, 333, 334, 689, 767
Csp6I	GTAC	1 cut(s)	981
CviAII	CATG	6 cut(s)	11, 214, 228, 330, 614, 665
CviQI	GTAC	1 cut(s)	981
DdeI	CTNAG	2 cut(s)	166, 839
DpnI	GATC	2 cut(s)	522, 936
DpnII	GATC	2 cut(s)	520, 934
Eam1104I	CTCTTC	2 cut(s)	165, 792
EarI	CTCTTC	2 cut(s)	165, 792
EciI	GGCGGA	1 cut(s)	131
Eco130I	CCWWGG	3 cut(s)	111, 613, 958
Eco147I	AGGCCT	1 cut(s)	575
Eco24I	GRGCYC	1 cut(s)	337
Eco47I	GGWCC	3 cut(s)	108, 689, 767
Eco57I	CTGAAG	2 cut(s)	281, 286
EcoNI	CCTNNNNNAGG	1 cut(s)	512
EcoO109I	RGGNCCY	1 cut(s)	767
EcoRI	GAATTC	1 cut(s)	386
EcoRII	CCWGG	2 cut(s)	575, 886
EcoT14I	CCWWGG	3 cut(s)	111, 613, 958
EcoT38I	GRGCYC	1 cut(s)	337
ErhI	CCWWGG	3 cut(s)	111, 613, 958
FaeI	CATG	6 cut(s)	14, 217, 231, 333, 617, 668
FalI	AAGNNNNNCTT	2 cut(s)	837, 869
FaqI	GGGAC	1 cut(s)	869
FatI	CATG	6 cut(s)	10, 213, 227, 329, 613, 664
Fnu4HI	GCNGC	3 cut(s)	72, 203, 206
FriOI	GRGCYC	1 cut(s)	337
Fsp4HI	GCNGC	3 cut(s)	72, 203, 206
FspBI	CTAG	2 cut(s)	602, 716
GlaI	GCGC	3 cut(s)	176, 607, 868
GluI	GCNGC	3 cut(s)	72, 203, 206
GsaI	CCCAGC	1 cut(s)	485
GsuI	CTGGAG	1 cut(s)	377
HaeII	RGCGCY	2 cut(s)	178, 609
HaeIII	GGCC	3 cut(s)	54, 335, 575
HhaI	GCGC	3 cut(s)	177, 608, 869
Hin1II	CATG	6 cut(s)	14, 217, 231, 333, 617, 668
Hin6I	GCGC	3 cut(s)	175, 606, 867
HinP1I	GCGC	3 cut(s)	175, 606, 867
HincII	GTYRAC	1 cut(s)	463
HindII	GTYRAC	1 cut(s)	463
HinfI	GANTC	4 cut(s)	95, 310, 326, 945
HphI	GGTGA	1 cut(s)	602
Hpy166II	GTNNAC	3 cut(s)	240, 463, 495
Hpy188I	TCNGA	2 cut(s)	100, 169
Hpy188III	TCNNGA	6 cut(s)	214, 347, 716, 791, 854, 896
Hpy8I	GTNNAC	3 cut(s)	240, 463, 495
HpyAV	CCTTC	2 cut(s)	8, 310
HpyCH4IV	ACGT	1 cut(s)	964
HpyCH4V	TGCA	4 cut(s)	131, 147, 202, 495
HpyF10VI	GCNNNNNNNGC	4 cut(s)	29, 228, 866, 875
HpyF3I	CTNAG	2 cut(s)	166, 839
HpySE526I	ACGT	1 cut(s)	964
Hsp92II	CATG	6 cut(s)	14, 217, 231, 333, 617, 668
HspAI	GCGC	3 cut(s)	175, 606, 867
Kzo9I	GATC	2 cut(s)	520, 934
LguI	GCTCTTC	1 cut(s)	165
LmnI	GCTCC	1 cut(s)	100
Lsp1109I	GCAGC	1 cut(s)	214
LweI	GCATC	2 cut(s)	72, 847
MaeI	CTAG	2 cut(s)	602, 716
MaeII	ACGT	1 cut(s)	964
MaeIII	GTNAC	1 cut(s)	796
MalI	GATC	2 cut(s)	522, 936
MboI	GATC	2 cut(s)	520, 934
MboII	GAAGA	4 cut(s)	182, 274, 382, 779
MhlI	GDGCHC	5 cut(s)	25, 258, 337, 497, 777
MluCI	AATT	1 cut(s)	386
MlyI	GAGTC	2 cut(s)	304, 320
MroXI	GAANNNNTTC	1 cut(s)	221
MseI	TTAA	2 cut(s)	474, 924
MslI	CAYNNNNRTG	1 cut(s)	924
MspA1I	CMGCKG	2 cut(s)	205, 481
MspR9I	CCNGG	2 cut(s)	577, 888
Mva1269I	GAATGC	2 cut(s)	147, 385
MvaI	CCWGG	2 cut(s)	577, 888
MwoI	GCNNNNNNNGC	4 cut(s)	29, 228, 866, 875
NcoI	CCATGG	1 cut(s)	613
NdeII	GATC	2 cut(s)	520, 934
NlaIII	CATG	6 cut(s)	14, 217, 231, 333, 617, 668
NlaIV	GGNNCC	2 cut(s)	335, 768
PagI	TCATGA	1 cut(s)	213
PceI	AGGCCT	1 cut(s)	575
PciSI	GCTCTTC	1 cut(s)	165
PctI	GAATGC	2 cut(s)	147, 385
PdmI	GAANNNNTTC	1 cut(s)	221
PfeI	GAWTC	2 cut(s)	95, 945
PflMI	CCANNNNNTGG	1 cut(s)	35
PkrI	GCNGC	3 cut(s)	73, 204, 207
PleI	GAGTC	2 cut(s)	304, 320
PpsI	GAGTC	2 cut(s)	304, 320
PpuMI	RGGWCCY	1 cut(s)	767
Psp5II	RGGWCCY	1 cut(s)	767
Psp6I	CCWGG	2 cut(s)	575, 886
PspFI	CCCAGC	1 cut(s)	481
PspGI	CCWGG	2 cut(s)	575, 886
PspN4I	GGNNCC	2 cut(s)	335, 768
PspOMI	GGGCCC	1 cut(s)	333
PspPI	GGNCC	5 cut(s)	108, 333, 334, 689, 767
PspPPI	RGGWCCY	1 cut(s)	767
PstI	CTGCAG	1 cut(s)	133
PvuII	CAGCTG	1 cut(s)	481
RsaI	GTAC	1 cut(s)	982
RsaNI	GTAC	1 cut(s)	981
RseI	CAYNNNNRTG	1 cut(s)	924
SapI	GCTCTTC	1 cut(s)	165
SaqAI	TTAA	2 cut(s)	474, 924
SatI	GCNGC	3 cut(s)	72, 203, 206
Sau3AI	GATC	2 cut(s)	520, 934
Sau96I	GGNCC	5 cut(s)	108, 333, 334, 689, 767
SchI	GAGTC	2 cut(s)	304, 320
ScrFI	CCNGG	2 cut(s)	577, 888
SduI	GDGCHC	5 cut(s)	25, 258, 337, 497, 777
SfaNI	GCATC	2 cut(s)	72, 847
SfcI	CTRYAG	1 cut(s)	129
SinI	GGWCC	3 cut(s)	108, 689, 767
SmiMI	CAYNNNNRTG	1 cut(s)	924
SmlI	CTYRAG	2 cut(s)	509, 695
SmoI	CTYRAG	2 cut(s)	509, 695
Sse9I	AATT	1 cut(s)	386
SseBI	AGGCCT	1 cut(s)	575
SsiI	CCGC	4 cut(s)	72, 116, 205, 891
SspMI	CTAG	2 cut(s)	602, 716
StuI	AGGCCT	1 cut(s)	575
StyD4I	CCNGG	2 cut(s)	575, 886
StyI	CCWWGG	3 cut(s)	111, 613, 958
TaiI	ACGT	1 cut(s)	967
TaqI	TCGA	2 cut(s)	519, 814
TasI	AATT	1 cut(s)	386
TauI	GCSGC	2 cut(s)	74, 208
TfiI	GAWTC	2 cut(s)	95, 945
Tru1I	TTAA	2 cut(s)	474, 924
Tru9I	TTAA	2 cut(s)	474, 924
TscAI	CASTG	1 cut(s)	876
TseI	GCWGC	1 cut(s)	202
TspDTI	ATGAA	4 cut(s)	27, 81, 230, 653
TspGWI	ACGGA	2 cut(s)	67, 380
TspRI	CASTG	1 cut(s)	876
Van91I	CCANNNNNTGG	1 cut(s)	35
VneI	GTGCAC	1 cut(s)	493
VpaK11BI	GGWCC	3 cut(s)	108, 689, 767
XagI	CCTNNNNNAGG	1 cut(s)	512
XapI	RAATTY	1 cut(s)	386
XbaI	TCTAGA	1 cut(s)	715
XcmI	CCANNNNNNNNNTGG	1 cut(s)	634
XmnI	GAANNNNTTC	1 cut(s)	221
XspI	CTAG	2 cut(s)	602, 716

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.