Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0008684

Physical Location & Seq

Genomic Coordinates Forward (+)

51206061 .. 51213803

Gene Structure 7743 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG283000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3495 bp

ATGGGCGAACATGAAGGGTGGGCACAGCCAGCAAGTGGGCTATTGCTGAATGGCCTATTGCCCAATGAAGCCGCCTCCGTGATGCGAGTGCTGGATTCCGAGCGATGGACCAAGGCGGAGGAGAGAACTGCAGAGCTTATTGCCTGCATTCAGCCCAATCCACCCTCAGAAGAGCGCCGAATTGCCGTTGCCGATTATGTGCAGCGGCTTATCATGAAGTGCTTCCCATGCCAGGTGTTCACTTTTGGGTCTGTGCCCCTCAAGACTTATCTGCCTGATGGAGATATTGACCTCACAGCCTTCAGCAAGACTCAAAGTTTGAAAGACTCATGGGCCCATCAGGTTCGTGATATGCTGGAGAATGAGGAGAAGAATGAGAATGCTGAATTTCGTGTCAAAGAGGTTCAATACATTCAAGCTGAAGTAAAGATAATCAAGTGCCTTGTGGAAAACATTGTAGTAGACATATCCTTTAATCAGCTGGGAGGCTTGTGCACCCTTTGTTTCCTTGAGGAGGTCGATCATCTCATAAATCAAAATCATTTGTTCAAGCGTAGTATTATACTGATAAAGGCCTGGTGTTATTATGAGAGCCGAATACTAGGCGCTCACCATGGACTTATCTCCACCTACGCTTTGGAAACATTGGTTTTATACATTTTTCATGTTTTCAACAACTCCTTTGCTGGACCACTTGAGGTCTTGTATCGCTTTCTAGAGTTCTTTAGTAAGTTTGACTGGGAGAACTTTTGTGTTAGCTTAAGGGGTCCTGTGCCCATTAGTTCTCTTCCAGATGTAACTGCCGAACCTCCTCGAAAAGATGGTGGAGAGTTACTACTAAGTGAAGTGTTTCTTGATGCGTGTAGCGCAGTGTATGCTGTCCGCCCTGGTGGTCAAGAAAATCAGGGCCAAGCTTTTGTTTCCAAACATTTTAATGTTATTGATCCTTTGAGAATCAACAACAACCTTGGACGTAGTGTTAGTAAAGGTAACTTCTTTAGGATACGCAGTGCATTTGCATTTGGGGCTAAAAGGCTGGCCAGGTTGCTTGATTGTTCAAAGGAGGATCTATGTTTCGAAGTAAATCAGTTTTTTCTCAACACTTGGGATAGACATGGAAGTGGTCATCGACCTGATGCACCACGTAATGATCTTAGGCACTTGCGACTTTCAAATGCAGACCACTTACATGGGTCTGAGAATCGCAGGAACAACTTAAGCGGCAAAAAAAATGAAAGTTCCTCTGGTCGAGATACTCAAGGGACACAAGGGATGCACCAGGAGGAGCAAGATCTTGTTAACATGATGGCATCTTCTGCAGCTCATGGTTTCAATGGACAGGTTCATCTTCCCCTGAATTTGGGTTCCGGTCATTTACCATTTCCAATCCCATCTTCTGTTCTTGCTTCGATGGGATATGCTCAGAGGAATATGGGTGGCATGTTTCCCACAAATTTTCCCTTGATGGAGAGTCCTTGGGGAACGAATATGCATTTTCCTCAAGGTGTTGTTCCGTCACCTTTAACTCATTATTTCCCTGGCATGGGGTTGACATCAAATCCTGAAGAATTGGTGGAACCTGGTAATGAAGATTTTGGTTCTGTGGAGATGAACTCAAGTGAAACTGATCATGATTTCTCGCACAACCAGGAGAGGGGATCTACTAGTGGATTTGATCATGATAATGGAGGTTTGGAAATGCTTGAGGCAGATGATAGGCAACAGTCAACCTCAGCTGGTTATAACTCCCATCCTTCATCTCGGATAGGCGCTGCTGTAAGTTCTATGCGAGTTCAACAAAAGTCCCCTAAAGAAAGCCGAGATTCAACGAGAGAAGATCATGTTGATGATTTTCAGTATCAAGATAACCGAGGAAATGAGGTATACTTTGATGACCGAGTGAGTTCTAGGTCGTTGTCGGCCAATTATACTAGTTCTGCAAGAAGCAAGACCTCCTCTGAGAGTTCTTGGGAAGGATCATCAGCAAAAGTGTCAAAGTCAACAAGGGAAAAACGGGGCAGAAAAGCTGCTCTGTCAACAGCTCCATCTACCTCATATGGGAAAGGTAAGAGTGTGTCTGAACATTCTTCTACTCAAGCAGATGATGAAAACAAAGATTGGAACCTGCCAACAACTTTAGGTGCTGAAATGGTAGAAAGAAGCACACTATCTCAACCTGTTGCTTCCTTGCATGTTCCAAGACATCAAATGCCGGGTTTTGAGCCATCTCAAACAAGTGGATCAGATTCGCTGATGCCTTTCCCAGTTCTCTTAGGGCCTGGCTCACGACAGAGAGCTACAAATGATTCTGGTGCTACCTACACATTTTATCCTACGGGACCTCCAGTTCCATTTGTTACAATGCTACCATATTACAATTTCCCAGCAGAGGCAGGATCTTCAGATGTATCAAGCCAATTCAGTAGGGAAGATGGACCTGAAAGTGATTCTGGTCAGAACTTTGATTCAGCTGAAGGAATTGATCAACCTGAGTTAAGAATTTCTAACTCCATGGGAAGGGTTGCTCCTATTGAGCCTTCTGAGTATAAATCTGACATCCTTCACAGTGACTTTGCCAGCCATTATCAGAATTTGCAGTATGGACGGTTATGCCAAAATCCTCGGCATTCTCCACCTATGGTTTATCCTTCACCTGTTATGGTGCCCCCTGCCTACTTGCAAGGGCGATTTCCTTGGGATGGTCCTGGGAGACCTCTCTCAGCCAATATGAATCTCATCACTCAGCTTATGAATTATGGCCCTCGTGTTGTTCCTGTTGCTGCTCCTCTCCAGTCTGTTTCTAACAGACCTGCTAGTGTGTATCAACGCTATGTTGATGAGATTCCAAGATACCGCAGTGGGACAGGGACCTACCTTCCAAATCCTAAGGTTTCTGCAAGGGACCGCCATACTTCAAGTGCAAGAAGGGGGAGTTTCAATTATGACAGAAATGACCACCATGGTGATAGAGAAGGGAACTGGAATGCCAACTCAAAGTCACGAGCTTCTGCACGCAACCACAGTCGCAGCCAAGCTGAGAAGCCAAATTCAAGAGTAGACCGTATGGCAGCTAGTGAGAGCCGTGCTGAGAGGCCATGGAGCTCACATAGACATGATTCATTCCCTTCATATCAATCTCAAAACGGTCCTATCCGCTCAAGTACTACACAGAGTGGTTCCACTAATGTGGCGTATGGCATGTATCCACTACCAGGCATGAATCCCGGTGGGGTGTCATCAAATGGACCTACCATGCCCCCTCTTGTCATGCTATATCCTTATGATCATAATGCTGGCTATGGGCCACCACCTGCTGAACAGCTGGAGTTTGGTTCTCTTGGACCAGTGGGTTTCTCAGGTTTGAATGAAGTTTCACAGTTAAATGAGGGAAGTCGGATGGGTGGAGTATTCGAGGAACAAAGATTTCACGGTGGCTCAACTCAACGATCGTCACCTGATCAGCCTTCCTCACCACACATCCAGAGGGGAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004652 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006396 GO:0006399 GO:0006401 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016074 GO:0016075 GO:0016077 GO:0016078 GO:0016740 GO:0016772 GO:0016779 GO:0019439 GO:0031123 GO:0031499 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0043021 GO:0043023 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043629 GO:0043630 GO:0043631 GO:0043632 GO:0043633 GO:0043634 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044877 GO:0046483 GO:0046700 GO:0070013 GO:0070566 GO:0071025 GO:0071027 GO:0071029 GO:0071035 GO:0071046 GO:0071704 GO:0090304 GO:1901360 GO:1901361 GO:1901575 GO:1990817

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NTP_transf_2

Protein Analysis

1164

Amino Acids

128.91

Weight (kDa)

6.02

Isoelectric Point (pI)

50.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MTPAP-like_central	PF22600	44 - 164	4.1e-10	Poly(A) RNA polymerase, mitochondrial-like, central palm domain
PAP-OAS1	PF26180	177 - 369	6.8e-93	PAP/OAS1 substrate-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0008684)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61690 AT3G61690 AT3G61690
fragaria_vesca	FvH4_7g16250 FvH4_7g16250 FvH4_7g16250 FvH4_7g16250
malus_domestica	MD01G1079200.v1.1 MD07G1148100.v1.1
prunus_persica	Prupe.2G186200_v2.0.a1 Prupe.2G186200_v2.0.a1
pyrus_communis	pycom01g10750 pycom07g14710
rosa_chinensis	RchiOBHm_Chr1g0359271
rosa_laevigata	RLG00000027887
rosa_multiflora	Rmu_ssc0000135.1_g000035
rosa_roxburghii	Rroxscaffold_4G00297170
rosa_rugosa	Rorug01G0269000
rosa_samantha	Rh1AG283000 Rh1BG249200 Rh1CG267000 Rh1DG278100
rosa_wichuraiana	Rw1G025120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1743
AarI	CACCTGC	1 cut(s)	3319
Acc36I	ACCTGC	3 cut(s)	2133, 2818, 3319
AccB1I	GGYRCC	1 cut(s)	2662
AccB7I	CCANNNNNTGG	1 cut(s)	35
AccBSI	CCGCTC	1 cut(s)	3156
AccI	GTMKAC	3 cut(s)	462, 1884, 3057
AciI	CCGC	8 cut(s)	72, 116, 205, 883, 1221, 2854, 2905, 3154
AclWI	GGATC	6 cut(s)	938, 1074, 1666, 1984, 2248, 2404
AcoI	YGGCCR	2 cut(s)	1038, 1920
AcsI	RAATTY	6 cut(s)	386, 1357, 1453, 2499, 2590, 3046
AcuI	CTGAAG	5 cut(s)	286, 441, 1584, 2385, 2493
AdeI	CACNNNGTG	1 cut(s)	3173
AfaI	GTAC	1 cut(s)	3163
AflII	CTTAAG	2 cut(s)	760, 1216
AhlI	ACTAGT	2 cut(s)	1664, 1931
AjuI	GAANNNNNNNTTGG	2 cut(s)	1378, 1410
AleI	CACNNNNGTG	2 cut(s)	2961, 3185
AloI	GAACNNNNNNTCC	2 cut(s)	2331, 2363
Alw21I	GWGCWC	2 cut(s)	497, 3104
Alw26I	GTCTC	1 cut(s)	2704
Alw44I	GTGCAC	1 cut(s)	493
AlwI	GGATC	6 cut(s)	938, 1074, 1666, 1984, 2248, 2404
ApaI	GGGCCC	1 cut(s)	337
ApaLI	GTGCAC	1 cut(s)	493
ApeKI	GCWGC	7 cut(s)	202, 1319, 1772, 2027, 2780, 3027, 3068
ApoI	RAATTY	6 cut(s)	386, 1357, 1453, 2499, 2590, 3046
ArsI	GACNNNNNNTTYG	2 cut(s)	301, 333
Asp700I	GAANNNNTTC	2 cut(s)	221, 849
AspLEI	GCGC	4 cut(s)	177, 608, 869, 1772
AsuC2I	CCSGG	2 cut(s)	2214, 3225
AsuHPI	GGTGA	6 cut(s)	602, 1509, 2643, 2975, 3444, 3462
AsuII	TTCGAA	1 cut(s)	1077
AxyI	CCTNAGG	1 cut(s)	2886
BaeGI	GKGCMC	6 cut(s)	25, 258, 337, 497, 777, 2667
BaeI	ACNNNNGTAYC	2 cut(s)	2842, 2875
BalI	TGGCCA	1 cut(s)	1040
BanI	GGYRCC	1 cut(s)	2662
BanII	GRGCYC	2 cut(s)	337, 3104
BauI	CACGAG	2 cut(s)	2763, 3000
Bbv12I	GWGCWC	2 cut(s)	497, 3104
BbvCI	CCTCAGC	1 cut(s)	1732
BbvI	GCAGC	7 cut(s)	214, 1331, 1759, 2014, 2767, 3039, 3080
BceAI	ACGGC	2 cut(s)	170, 3066
BciVI	GTATCC	2 cut(s)	996, 3213
BclI	TGATCA	5 cut(s)	1627, 1675, 2482, 3283, 3457
BcnI	CCSGG	2 cut(s)	2214, 3225
BcoDI	GTCTC	1 cut(s)	2704
BcuI	ACTAGT	2 cut(s)	1664, 1931
BfaI	CTAG	7 cut(s)	602, 716, 1665, 1908, 1932, 2814, 3072
BfmI	CTRYAG	2 cut(s)	129, 1317
BfoI	RGCGCY	3 cut(s)	178, 609, 1773
BfrI	CTTAAG	2 cut(s)	760, 1216
BfuAI	ACCTGC	3 cut(s)	2133, 2818, 3319
BfuI	GTATCC	2 cut(s)	996, 3213
BglII	AGATCT	1 cut(s)	1291
BmcAI	AGTACT	1 cut(s)	3163
BmrI	ACTGGG	2 cut(s)	748, 2258
BmsI	GCATC	6 cut(s)	72, 847, 1126, 1263, 1319, 2244
BmuI	ACTGGG	2 cut(s)	748, 2258
BplI	GAGNNNNNCTC	2 cut(s)	1598, 1630
BpmI	CTGGAG	4 cut(s)	377, 2328, 2774, 3344
Bpu10I	CCTNAGC	1 cut(s)	1732
Bpu14I	TTCGAA	1 cut(s)	1077
BpuEI	CTTGAG	9 cut(s)	245, 530, 716, 1242, 1485, 1600, 1724, 2079, 3142
BpuMI	CCSGG	2 cut(s)	2214, 3225
BsaAI	YACGTR	1 cut(s)	1145
BsaI	GGTCTC	1 cut(s)	2704
BsaWI	WCCGGW	1 cut(s)	1367
BsaXI	ACNNNNNCTCC	2 cut(s)	2326, 2356
Bse1I	ACTGG	6 cut(s)	743, 2264, 2345, 2791, 2984, 3344
Bse21I	CCTNAGG	1 cut(s)	2886
BseGI	GGATG	6 cut(s)	1278, 1750, 2556, 2704, 3402, 3477
BseNI	ACTGG	6 cut(s)	743, 2264, 2345, 2791, 2984, 3344
BseRI	GAGGAG	7 cut(s)	134, 380, 527, 801, 1298, 1945, 2775
BseSI	GKGCMC	6 cut(s)	25, 258, 337, 497, 777, 2667
BseXI	GCAGC	7 cut(s)	214, 1331, 1759, 2014, 2767, 3039, 3080
BseYI	CCCAGC	2 cut(s)	481, 2383
BsgI	GTGCAG	2 cut(s)	221, 2994
Bsh1285I	CGRYCG	1 cut(s)	3449
BshNI	GGYRCC	1 cut(s)	2662
BsiEI	CGRYCG	1 cut(s)	3449
BsiHKAI	GWGCWC	2 cut(s)	497, 3104
BsiSI	CCGG	3 cut(s)	1368, 2213, 3225
BslFI	GGGAC	6 cut(s)	1276, 1789, 2352, 2875, 2881, 2915
BsmAI	GTCTC	1 cut(s)	2704
BsmFI	GGGAC	6 cut(s)	1276, 1789, 2352, 2875, 2881, 2915
BsmI	GAATGC	4 cut(s)	147, 385, 2626, 2989
Bso31I	GGTCTC	1 cut(s)	2704
Bsp119I	TTCGAA	1 cut(s)	1077
Bsp120I	GGGCCC	1 cut(s)	333
Bsp1286I	GDGCHC	7 cut(s)	25, 258, 337, 497, 777, 2667, 3104
Bsp19I	CCATGG	4 cut(s)	613, 2511, 2959, 3095
BspACI	CCGC	8 cut(s)	72, 116, 205, 883, 1221, 2854, 2905, 3154
BspHI	TCATGA	3 cut(s)	213, 1630, 1678
BspMAI	CTGCAG	2 cut(s)	133, 1321
BspMI	ACCTGC	3 cut(s)	2133, 2818, 3319
BspPI	GGATC	6 cut(s)	938, 1074, 1666, 1984, 2248, 2404
BspQI	GCTCTTC	1 cut(s)	165
BspT104I	TTCGAA	1 cut(s)	1077
BspT107I	GGYRCC	1 cut(s)	2662
BspTI	CTTAAG	2 cut(s)	760, 1216
BspTNI	GGTCTC	1 cut(s)	2704
BsrBI	CCGCTC	1 cut(s)	3156
BsrI	ACTGG	6 cut(s)	743, 2264, 2345, 2791, 2984, 3344
BssNAI	GTATAC	1 cut(s)	1885
BssSI	CACGAG	2 cut(s)	2763, 3000
BssT1I	CCWWGG	8 cut(s)	111, 613, 967, 1475, 2511, 2693, 2959, 3095
Bst1107I	GTATAC	1 cut(s)	1885
Bst2BI	CACGAG	2 cut(s)	2763, 3000
Bst4CI	ACNGT	8 cut(s)	1725, 2567, 2607, 3023, 3062, 3146, 3378, 3431
Bst6I	CTCTTC	2 cut(s)	165, 792
BstAFI	CTTAAG	2 cut(s)	760, 1216
BstAPI	GCANNNNNTGC	2 cut(s)	875, 1316
BstBAI	YACGTR	1 cut(s)	1145
BstBI	TTCGAA	1 cut(s)	1077
BstC8I	GCNNGC	6 cut(s)	30, 145, 1038, 2578, 3013, 3295
BstDSI	CCRYGG	4 cut(s)	613, 2511, 2959, 3095
BstENI	CCTNNNNNAGG	1 cut(s)	512
BstF5I	GGATG	6 cut(s)	1278, 1750, 2556, 2704, 3402, 3477
BstH2I	RGCGCY	3 cut(s)	178, 609, 1773
BstHHI	GCGC	4 cut(s)	177, 608, 869, 1772
BstMAI	GTCTC	1 cut(s)	2704
BstMCI	CGRYCG	1 cut(s)	3449
BstMWI	GCNNNNNNNGC	6 cut(s)	29, 228, 866, 875, 1025, 1316
BstNSI	RCATGY	3 cut(s)	1444, 2195, 3202
BstSFI	CTRYAG	2 cut(s)	129, 1317
BstSLI	GKGCMC	6 cut(s)	25, 258, 337, 497, 777, 2667
BstV1I	GCAGC	7 cut(s)	214, 1331, 1759, 2014, 2767, 3039, 3080
BstX2I	RGATCY	4 cut(s)	1066, 1291, 1658, 2396
BstXI	CCANNNNNNTGG	2 cut(s)	1190, 3187
BstYI	RGATCY	4 cut(s)	1066, 1291, 1658, 2396
BstZ17I	GTATAC	1 cut(s)	1885
Bsu36I	CCTNAGG	1 cut(s)	2886
BsuI	GTATCC	2 cut(s)	996, 3213
BtgI	CCRYGG	4 cut(s)	613, 2511, 2959, 3095
BtgZI	GCGATG	1 cut(s)	118
BtsCI	GGATG	6 cut(s)	1278, 1750, 2556, 2704, 3402, 3477
BtsI	GCAGTG	3 cut(s)	876, 1015, 2863
BtsIMutI	CAGTG	5 cut(s)	876, 1015, 2572, 2863, 3351
BveI	ACCTGC	3 cut(s)	2133, 2818, 3319
Cac8I	GCNNGC	6 cut(s)	30, 145, 1038, 2578, 3013, 3295
CciI	TCATGA	3 cut(s)	213, 1630, 1678
CfoI	GCGC	4 cut(s)	177, 608, 869, 1772
CsiI	ACCWGGT	1 cut(s)	1579
Csp6I	GTAC	1 cut(s)	3162
CviQI	GTAC	1 cut(s)	3162
DraIII	CACNNNGTG	1 cut(s)	3173
EaeI	YGGCCR	2 cut(s)	1038, 1920
Eam1104I	CTCTTC	2 cut(s)	165, 792
EarI	CTCTTC	2 cut(s)	165, 792
EciI	GGCGGA	2 cut(s)	131, 872
Ecl136II	GAGCTC	1 cut(s)	3102
Eco130I	CCWWGG	8 cut(s)	111, 613, 967, 1475, 2511, 2693, 2959, 3095
Eco147I	AGGCCT	1 cut(s)	575
Eco24I	GRGCYC	2 cut(s)	337, 3104
Eco31I	GGTCTC	1 cut(s)	2704
Eco53kI	GAGCTC	1 cut(s)	3102
Eco57I	CTGAAG	5 cut(s)	286, 441, 1584, 2385, 2493
Eco81I	CCTNAGG	1 cut(s)	2886
EcoICRI	GAGCTC	1 cut(s)	3102
EcoNI	CCTNNNNNAGG	1 cut(s)	512
EcoO109I	RGGNCCY	4 cut(s)	767, 2276, 2339, 2868
EcoT14I	CCWWGG	8 cut(s)	111, 613, 967, 1475, 2511, 2693, 2959, 3095
EcoT22I	ATGCAT	1 cut(s)	1494
EcoT38I	GRGCYC	2 cut(s)	337, 3104
ErhI	CCWWGG	8 cut(s)	111, 613, 967, 1475, 2511, 2693, 2959, 3095
FalI	AAGNNNNNCTT	2 cut(s)	837, 869
FaqI	GGGAC	6 cut(s)	1276, 1789, 2352, 2875, 2881, 2915
FauNDI	CATATG	1 cut(s)	2056
FbaI	TGATCA	5 cut(s)	1627, 1675, 2482, 3283, 3457
FblI	GTMKAC	3 cut(s)	462, 1884, 3057
FokI	GGATG	6 cut(s)	1285, 1737, 2543, 2711, 3409, 3464
FriOI	GRGCYC	2 cut(s)	337, 3104
FspBI	CTAG	7 cut(s)	602, 716, 1665, 1908, 1932, 2814, 3072
GlaI	GCGC	4 cut(s)	176, 607, 868, 1771
GsaI	CCCAGC	2 cut(s)	485, 2387
GsuI	CTGGAG	4 cut(s)	377, 2328, 2774, 3344
HaeII	RGCGCY	3 cut(s)	178, 609, 1773
HapII	CCGG	3 cut(s)	1368, 2213, 3225
HhaI	GCGC	4 cut(s)	177, 608, 869, 1772
Hin6I	GCGC	4 cut(s)	175, 606, 867, 1770
HinP1I	GCGC	4 cut(s)	175, 606, 867, 1770
HincII	GTYRAC	5 cut(s)	1300, 1551, 1728, 2001, 2037
HindII	GTYRAC	5 cut(s)	1300, 1551, 1728, 2001, 2037
HindIII	AAGCTT	1 cut(s)	912
HpaI	GTTAAC	1 cut(s)	1300
HpaII	CCGG	3 cut(s)	1368, 2213, 3225
HphI	GGTGA	6 cut(s)	602, 1509, 2643, 2975, 3444, 3462
HpyCH4III	ACNGT	8 cut(s)	1725, 2567, 2607, 3023, 3062, 3146, 3378, 3431
HpyCH4IV	ACGT	2 cut(s)	973, 1144
HpyF10VI	GCNNNNNNNGC	6 cut(s)	29, 228, 866, 875, 1025, 1316
HpySE526I	ACGT	2 cut(s)	973, 1144
HspAI	GCGC	4 cut(s)	175, 606, 867, 1770
Ksp22I	TGATCA	5 cut(s)	1627, 1675, 2482, 3283, 3457
KspAI	GTTAAC	1 cut(s)	1300
LguI	GCTCTTC	1 cut(s)	165
LmnI	GCTCC	5 cut(s)	1285, 2047, 2530, 2788, 3099
Lsp1109I	GCAGC	7 cut(s)	214, 1331, 1759, 2014, 2767, 3039, 3080
LweI	GCATC	6 cut(s)	72, 847, 1126, 1263, 1319, 2244
MabI	ACCWGGT	1 cut(s)	1579
MaeI	CTAG	7 cut(s)	602, 716, 1665, 1908, 1932, 2814, 3072
MaeII	ACGT	2 cut(s)	973, 1144
MaeIII	GTNAC	8 cut(s)	796, 831, 989, 1515, 2356, 2567, 2997, 3450
MbiI	CCGCTC	1 cut(s)	3156
MflI	RGATCY	4 cut(s)	1066, 1291, 1658, 2396
MhlI	GDGCHC	7 cut(s)	25, 258, 337, 497, 777, 2667, 3104
MlsI	TGGCCA	1 cut(s)	1040
MluNI	TGGCCA	1 cut(s)	1040
MlyI	GAGTC	3 cut(s)	304, 320, 1480
MmeI	TCCRAC	1 cut(s)	3374
Mox20I	TGGCCA	1 cut(s)	1040
Mph1103I	ATGCAT	1 cut(s)	1494
MroXI	GAANNNNTTC	2 cut(s)	221, 849
MscI	TGGCCA	1 cut(s)	1040
MseI	TTAA	8 cut(s)	474, 761, 933, 1217, 1299, 1523, 2495, 3380
MslI	CAYNNNNRTG	8 cut(s)	933, 1119, 1188, 1683, 1845, 2961, 3111, 3185
Msp20I	TGGCCA	1 cut(s)	1040
MspA1I	CMGCKG	5 cut(s)	205, 481, 1736, 2471, 3322
MspCI	CTTAAG	2 cut(s)	760, 1216
MspI	CCGG	3 cut(s)	1368, 2213, 3225
Mva1269I	GAATGC	4 cut(s)	147, 385, 2626, 2989
MwoI	GCNNNNNNNGC	6 cut(s)	29, 228, 866, 875, 1025, 1316
NciI	CCSGG	2 cut(s)	2214, 3225
NcoI	CCATGG	4 cut(s)	613, 2511, 2959, 3095
NdeI	CATATG	1 cut(s)	2056
NmeAIII	GCCGAG	2 cut(s)	1844, 2602
NmuCI	GTSAC	4 cut(s)	1515, 2567, 2997, 3450
NsiI	ATGCAT	1 cut(s)	1494
NspI	RCATGY	3 cut(s)	1444, 2195, 3202
NspV	TTCGAA	1 cut(s)	1077
OliI	CACNNNNGTG	2 cut(s)	2961, 3185
PagI	TCATGA	3 cut(s)	213, 1630, 1678
PaqCI	CACCTGC	1 cut(s)	3319
PceI	AGGCCT	1 cut(s)	575
PciSI	GCTCTTC	1 cut(s)	165
PctI	GAATGC	4 cut(s)	147, 385, 2626, 2989
PdmI	GAANNNNTTC	2 cut(s)	221, 849
PflMI	CCANNNNNTGG	1 cut(s)	35
Ple19I	CGATCG	1 cut(s)	3449
PleI	GAGTC	3 cut(s)	304, 320, 1479
PpsI	GAGTC	3 cut(s)	304, 320, 1479
Ppu21I	YACGTR	1 cut(s)	1145
PpuMI	RGGWCCY	3 cut(s)	767, 2339, 2868
PsiI	TTATAA	1 cut(s)	1743
Psp124BI	GAGCTC	1 cut(s)	3104
Psp5II	RGGWCCY	3 cut(s)	767, 2339, 2868
PspFI	CCCAGC	2 cut(s)	481, 2383
PspOMI	GGGCCC	1 cut(s)	333
PspPPI	RGGWCCY	3 cut(s)	767, 2339, 2868
PstI	CTGCAG	2 cut(s)	133, 1321
PsuI	RGATCY	4 cut(s)	1066, 1291, 1658, 2396
PvuI	CGATCG	1 cut(s)	3449
PvuII	CAGCTG	4 cut(s)	481, 1736, 2471, 3322
RsaI	GTAC	1 cut(s)	3163
RsaNI	GTAC	1 cut(s)	3162
RseI	CAYNNNNRTG	8 cut(s)	933, 1119, 1188, 1683, 1845, 2961, 3111, 3185
SacI	GAGCTC	1 cut(s)	3104
SapI	GCTCTTC	1 cut(s)	165
SaqAI	TTAA	8 cut(s)	474, 761, 933, 1217, 1299, 1523, 2495, 3380
ScaI	AGTACT	1 cut(s)	3163
SchI	GAGTC	3 cut(s)	304, 320, 1480
SduI	GDGCHC	7 cut(s)	25, 258, 337, 497, 777, 2667, 3104
SexAI	ACCWGGT	1 cut(s)	1579
SfaNI	GCATC	6 cut(s)	72, 847, 1126, 1263, 1319, 2244
SfcI	CTRYAG	2 cut(s)	129, 1317
SfuI	TTCGAA	1 cut(s)	1077
SmiMI	CAYNNNNRTG	8 cut(s)	933, 1119, 1188, 1683, 1845, 2961, 3111, 3185
SpeI	ACTAGT	2 cut(s)	1664, 1931
SseBI	AGGCCT	1 cut(s)	575
SsiI	CCGC	8 cut(s)	72, 116, 205, 883, 1221, 2854, 2905, 3154
SspMI	CTAG	7 cut(s)	602, 716, 1665, 1908, 1932, 2814, 3072
SstI	GAGCTC	1 cut(s)	3104
StuI	AGGCCT	1 cut(s)	575
StyI	CCWWGG	8 cut(s)	111, 613, 967, 1475, 2511, 2693, 2959, 3095
TaaI	ACNGT	8 cut(s)	1725, 2567, 2607, 3023, 3062, 3146, 3378, 3431
TaiI	ACGT	2 cut(s)	976, 1147
TaqI	TCGA	7 cut(s)	519, 814, 1077, 1129, 1249, 1409, 3411
TaqII	GACCGA	1 cut(s)	1911
TatI	WGTACW	1 cut(s)	3161
TauI	GCSGC	3 cut(s)	74, 208, 1224
Tru1I	TTAA	8 cut(s)	474, 761, 933, 1217, 1299, 1523, 2495, 3380
Tru9I	TTAA	8 cut(s)	474, 761, 933, 1217, 1299, 1523, 2495, 3380
TscAI	CASTG	5 cut(s)	876, 1015, 2572, 2863, 3351
TseFI	GTSAC	4 cut(s)	1515, 2567, 2997, 3450
TseI	GCWGC	7 cut(s)	202, 1319, 1772, 2027, 2780, 3027, 3068
Tsp45I	GTSAC	4 cut(s)	1515, 2567, 2997, 3450
TspGWI	ACGGA	2 cut(s)	67, 1503
TspRI	CASTG	5 cut(s)	876, 1015, 2572, 2863, 3351
Van91I	CCANNNNNTGG	1 cut(s)	35
Vha464I	CTTAAG	2 cut(s)	760, 1216
VneI	GTGCAC	1 cut(s)	493
XagI	CCTNNNNNAGG	1 cut(s)	512
XapI	RAATTY	6 cut(s)	386, 1357, 1453, 2499, 2590, 3046
XbaI	TCTAGA	1 cut(s)	715
XceI	RCATGY	3 cut(s)	1444, 2195, 3202
XcmI	CCANNNNNNNNNTGG	1 cut(s)	634
XmiI	GTMKAC	3 cut(s)	462, 1884, 3057
XmnI	GAANNNNTTC	2 cut(s)	221, 849
XspI	CTAG	7 cut(s)	602, 716, 1665, 1908, 1932, 2814, 3072
ZrmI	AGTACT	1 cut(s)	3163
Zsp2I	ATGCAT	1 cut(s)	1494

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.