Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010279

Physical Location & Seq

Genomic Coordinates Reverse (-)

23086989 .. 23089357

Gene Structure 2369 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G62390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1428 bp

ATGGAGAGACAAAGAAGTTTCTCTGTGAAGTCCACAAGAGTCTTAGCATTCATCATCACAATAATCTCTTCCGCCATTGTTTTCTTCACTTTCTTCTCCTCTTCCTTACTCAAATCTAACTCTTCTCTTTACCCAACACCAGAAGCTAACTTCCAGATCGATTTAAGCCCTATTGCCGCCATTTCCGATTCTTCAGTTTCTCCTCAAGCAAGTCCGATTCTGATCTCTACCCATTTCAATTCACCCGAAAACACTTCCGGGTCTTCAAAAATTTCTGTTTTTGAGCAGAAGATTAGCGGCGAGAGTTTGGTTAAGGAAGTTAGGGAAATTGCTAATTTAACTTCGATTAAAGTGATTGAACTTCCGAGCAACAATGGTGAAGATAAGAAGACAGAGAAGAGAATCGAAGAATGTGATGTTACGAAAGGGAAGTGGGTTTACGATAGTGATTATCCATTGTACACAAATGCGTCTTGTCCTTTTATCGATGAAGGATTTGGTTGTCAAAGCAATGGAAGATTGGATCTTAATTACATGAATTGGAGATGGGAGCCTCAGGATTGTCATGCTCCCAGGTTCAATGCTACAAAGATGCTGGAAATGATTAGAGGCAAGAGGCTAGTGTTCGTTGGAGATTCAATTAATAGGAACCAATGGGAATCTATGCTTTGTTTGTTGTTTCAAGCTGTTAAAGATCCCAAGAGAGTATACGAAACGCACAACCGAAGAATCACCAAAGAGAAAGGGAATTATAGCTTCCGTTTCGTGGATTATAAATGCACTGTGGAATTCTATGTTACTCATTTCTTGGTTCGTGAGGGTAGAGCAAGAATAGGAAAGAAGCGAAGAGAAACACTTAGAATCGATGCTATGGATCGAACCTCTTCCAGATGGAAAGGTGCTAATATCTTAGTGTTCAATACAGCTCATTGGTGGTCTCATTACAAAACCAAATCAGGGGTCAACTACTACCAAGAAGGAGACCTGATTCATCCCAAACTCGATGTATCAACCGCTTTTAAGAAAGCTTTGCAGACTTGGTCATCATGGGTTGACAAAAATGTCGATCCGAAGAAAACTCGCGTTTTCTTTAGAAGCGCTGCACCTTCTCATTTCAGTGGAGGAGAATGGAACTCAGGAGGTCATTGCAGAGAAGCCAACATGCCGTTGAACCAAACCTTCAAACCAAGTTACTCGAGCAAAAAGTCCATTGTTGAGGACGTACTGAAGCAAATGAGAACACCGGTAACCCTCTTGAACGTTAGCGGTTTATCTCAGTACAGAATTGACGCCCATCCTTCTATTTACGGAACAAAACCCGAAAACCGGCGTTCAAGAGCTGTCCAAGATTGCAGCCATTGGTGTCTCCCTGGTGTTCCTGATACTTGGAACCACTTCCTTTACCTCCATTTGCTCCATAAACGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

475

Amino Acids

54.64

Weight (kDa)

9.45

Isoelectric Point (pI)

48.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	136 - 189	1.4e-22	PMR5 N terminal Domain
PC-Esterase	PF13839	191 - 468	5.2e-100	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010279)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62390 AT3G62390
fragaria_vesca	FvH4_5g39120 FvH4_5g39120 FvH4_5g39120
malus_domestica	MD03G1294400.v1.1
prunus_persica	Prupe.8G266500_v2.0.a1
pyrus_communis	pycom03g23280
rosa_chinensis	RchiOBHm_Chr4g0407051 RchiOBHm_Chr5g0073791 RchiOBHm_Chr7g0241111
rosa_laevigata	RLG00000000596
rosa_multiflora	Rmu_sc0003187.1_g000001
rosa_roxburghii	Rroxscaffold_3G00219260
rosa_rugosa	Rorug07G0342400 Rorug07G0342500
rosa_samantha	Rh7AG497600 Rh7BG468400 Rh7CG514500 Rh7DG481600
rosa_wichuraiana	Rw7G041980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	774
AasI	GACNNNNNNGTC	1 cut(s)	1061
AccI	GTMKAC	1 cut(s)	708
AccII	CGCG	1 cut(s)	1083
AciI	CCGC	5 cut(s)	72, 177, 297, 1014, 1266
AclI	AACGTT	1 cut(s)	1260
AclWI	GGATC	4 cut(s)	531, 689, 882, 1061
AcsI	RAATTY	2 cut(s)	270, 788
AcuI	CTGAAG	2 cut(s)	177, 1247
AcyI	GRCGYC	1 cut(s)	1290
AfaI	GTAC	3 cut(s)	461, 1224, 1280
AfeI	AGCGCT	1 cut(s)	1099
AfiI	CCNNNNNNNGG	3 cut(s)	766, 957, 1326
AgeI	ACCGGT	1 cut(s)	1243
AjnI	CCWGG	2 cut(s)	572, 1369
AluBI	AGCT	6 cut(s)	146, 686, 756, 926, 1028, 1340
AluI	AGCT	6 cut(s)	146, 686, 756, 926, 1028, 1340
Alw26I	GTCTC	3 cut(s)	942, 975, 1370
AlwI	GGATC	4 cut(s)	531, 689, 882, 1061
Ama87I	CYCGRG	1 cut(s)	1195
Aor51HI	AGCGCT	1 cut(s)	1099
ApeKI	GCWGC	2 cut(s)	1100, 1353
ApoI	RAATTY	2 cut(s)	270, 788
ArsI	GACNNNNNNTTYG	2 cut(s)	945, 977
AseI	ATTAAT	1 cut(s)	642
AsiGI	ACCGGT	1 cut(s)	1243
Asp700I	GAANNNNTTC	2 cut(s)	883, 1394
AspLEI	GCGC	1 cut(s)	1100
AsuC2I	CCSGG	1 cut(s)	259
AsuHPI	GGTGA	3 cut(s)	234, 389, 724
AvaI	CYCGRG	1 cut(s)	1195
AxyI	CCTNAGG	1 cut(s)	555
BarI	GAAGNNNNNNTAC	2 cut(s)	422, 454
BbsI	GAAGAC	2 cut(s)	255, 395
BbvI	GCAGC	2 cut(s)	1087, 1365
BccI	CCATC	3 cut(s)	540, 885, 1302
BceAI	ACGGC	1 cut(s)	1150
BciT130I	CCWGG	2 cut(s)	574, 1371
BcnI	CCSGG	1 cut(s)	259
BcoDI	GTCTC	3 cut(s)	942, 975, 1370
BfaI	CTAG	1 cut(s)	620
BfoI	RGCGCY	1 cut(s)	1101
BisI	GCNGC	4 cut(s)	177, 298, 1101, 1354
BlsI	GCNGC	4 cut(s)	178, 299, 1102, 1355
Bme1390I	CCNGG	3 cut(s)	259, 574, 1371
BmeT110I	CYCGRG	1 cut(s)	1195
BmiI	GGNNCC	3 cut(s)	552, 650, 1391
BmrFI	CCNGG	3 cut(s)	259, 574, 1371
BmsI	GCATC	2 cut(s)	582, 856
BpiI	GAAGAC	2 cut(s)	255, 395
BpuEI	CTTGAG	1 cut(s)	189
BpuMI	CCSGG	1 cut(s)	259
Bsa29I	ATCGAT	3 cut(s)	159, 486, 864
BsaBI	GATNNNNATC	1 cut(s)	221
BsaHI	GRCGYC	1 cut(s)	1290
BsaI	GGTCTC	2 cut(s)	942, 975
BsaJI	CCNNGG	2 cut(s)	572, 1369
BsaWI	WCCGGW	1 cut(s)	1243
Bsc4I	CCNNNNNNNGG	3 cut(s)	766, 957, 1326
Bse118I	RCCGGY	2 cut(s)	1243, 1326
Bse21I	CCTNAGG	1 cut(s)	555
Bse3DI	GCAATG	2 cut(s)	517, 1144
Bse8I	GATNNNNATC	1 cut(s)	221
BseBI	CCWGG	2 cut(s)	574, 1371
BseCI	ATCGAT	3 cut(s)	159, 486, 864
BseDI	CCNNGG	2 cut(s)	572, 1369
BseGI	GGATG	2 cut(s)	991, 1294
BseJI	GATNNNNATC	1 cut(s)	221
BseLI	CCNNNNNNNGG	3 cut(s)	766, 957, 1326
BseMI	GCAATG	2 cut(s)	517, 1144
BseMII	CTCAG	3 cut(s)	569, 1149, 1289
BseRI	GAGGAG	3 cut(s)	88, 192, 1137
BseXI	GCAGC	2 cut(s)	1087, 1365
BsgI	GTGCAG	1 cut(s)	1086
Bsh1236I	CGCG	1 cut(s)	1083
BshTI	ACCGGT	1 cut(s)	1243
BshVI	ATCGAT	3 cut(s)	159, 486, 864
BsiHKCI	CYCGRG	1 cut(s)	1195
BsiSI	CCGG	3 cut(s)	258, 1244, 1327
BslI	CCNNNNNNNGG	3 cut(s)	766, 957, 1326
BsmAI	GTCTC	3 cut(s)	942, 975, 1370
BsmI	GAATGC	1 cut(s)	47
Bso31I	GGTCTC	2 cut(s)	942, 975
BsoBI	CYCGRG	1 cut(s)	1195
Bsp1407I	TGTACA	1 cut(s)	459
Bsp143I	GATC	6 cut(s)	156, 222, 523, 694, 874, 1066
BspACI	CCGC	5 cut(s)	72, 177, 297, 1014, 1266
BspCNI	CTCAG	3 cut(s)	568, 1148, 1288
BspDI	ATCGAT	3 cut(s)	159, 486, 864
BspFNI	CGCG	1 cut(s)	1083
BspLI	GGNNCC	3 cut(s)	552, 650, 1391
BspPI	GGATC	4 cut(s)	531, 689, 882, 1061
BspTNI	GGTCTC	2 cut(s)	942, 975
BsrDI	GCAATG	2 cut(s)	517, 1144
BsrFI	RCCGGY	2 cut(s)	1243, 1326
BsrGI	TGTACA	1 cut(s)	459
BssAI	RCCGGY	2 cut(s)	1243, 1326
BssECI	CCNNGG	2 cut(s)	572, 1369
BssMI	GATC	6 cut(s)	156, 222, 523, 694, 874, 1066
BssNAI	GTATAC	1 cut(s)	709
BssNI	GRCGYC	1 cut(s)	1290
Bst1107I	GTATAC	1 cut(s)	709
Bst2UI	CCWGG	2 cut(s)	574, 1371
Bst4CI	ACNGT	1 cut(s)	784
Bst6I	CTCTTC	6 cut(s)	73, 106, 127, 392, 841, 889
BstACI	GRCGYC	1 cut(s)	1290
BstAUI	TGTACA	1 cut(s)	459
BstDEI	CTNAG	6 cut(s)	43, 555, 857, 910, 1135, 1275
BstEII	GGTNACC	1 cut(s)	1246
BstF5I	GGATG	2 cut(s)	991, 1294
BstFNI	CGCG	1 cut(s)	1083
BstH2I	RGCGCY	1 cut(s)	1101
BstHHI	GCGC	1 cut(s)	1100
BstKTI	GATC	6 cut(s)	159, 225, 526, 697, 877, 1069
BstMAI	GTCTC	3 cut(s)	942, 975, 1370
BstMBI	GATC	6 cut(s)	156, 222, 523, 694, 874, 1066
BstNI	CCWGG	2 cut(s)	574, 1371
BstNSI	RCATGY	1 cut(s)	1165
BstPI	GGTNACC	1 cut(s)	1246
BstSCI	CCNGG	3 cut(s)	257, 572, 1369
BstUI	CGCG	1 cut(s)	1083
BstV1I	GCAGC	2 cut(s)	1087, 1365
BstV2I	GAAGAC	2 cut(s)	255, 395
BstX2I	RGATCY	2 cut(s)	523, 694
BstYI	RGATCY	2 cut(s)	523, 694
BstZ17I	GTATAC	1 cut(s)	709
Bsu15I	ATCGAT	3 cut(s)	159, 486, 864
Bsu36I	CCTNAGG	1 cut(s)	555
BsuTUI	ATCGAT	3 cut(s)	159, 486, 864
BtsCI	GGATG	2 cut(s)	991, 1294
BtsIMutI	CAGTG	2 cut(s)	780, 1123
CfoI	GCGC	1 cut(s)	1100
Cfr10I	RCCGGY	2 cut(s)	1243, 1326
ClaI	ATCGAT	3 cut(s)	159, 486, 864
CseI	GACGC	2 cut(s)	459, 1298
Csp6I	GTAC	3 cut(s)	460, 1223, 1279
CspAI	ACCGGT	1 cut(s)	1243
CviAII	CATG	4 cut(s)	535, 566, 1047, 1162
CviQI	GTAC	3 cut(s)	460, 1223, 1279
DdeI	CTNAG	6 cut(s)	43, 555, 857, 910, 1135, 1275
DpnI	GATC	6 cut(s)	158, 224, 525, 696, 876, 1068
DpnII	GATC	6 cut(s)	156, 222, 523, 694, 874, 1066
DrdI	GACNNNNNNGTC	1 cut(s)	1061
DseDI	GACNNNNNNGTC	1 cut(s)	1061
Eam1104I	CTCTTC	6 cut(s)	73, 106, 127, 392, 841, 889
EarI	CTCTTC	6 cut(s)	73, 106, 127, 392, 841, 889
EciI	GGCGGA	1 cut(s)	61
Eco31I	GGTCTC	2 cut(s)	942, 975
Eco47III	AGCGCT	1 cut(s)	1099
Eco57I	CTGAAG	2 cut(s)	177, 1247
Eco81I	CCTNAGG	1 cut(s)	555
Eco88I	CYCGRG	1 cut(s)	1195
Eco91I	GGTNACC	1 cut(s)	1246
EcoO65I	GGTNACC	1 cut(s)	1246
EcoRI	GAATTC	1 cut(s)	788
EcoRII	CCWGG	2 cut(s)	572, 1369
FaeI	CATG	4 cut(s)	538, 569, 1050, 1165
FatI	CATG	4 cut(s)	534, 565, 1046, 1161
FblI	GTMKAC	1 cut(s)	708
Fnu4HI	GCNGC	4 cut(s)	177, 298, 1101, 1354
FokI	GGATG	2 cut(s)	978, 1281
Fsp4HI	GCNGC	4 cut(s)	177, 298, 1101, 1354
FspBI	CTAG	1 cut(s)	620
GlaI	GCGC	1 cut(s)	1099
GluI	GCNGC	4 cut(s)	177, 298, 1101, 1354
HaeII	RGCGCY	1 cut(s)	1101
HapII	CCGG	3 cut(s)	258, 1244, 1327
HgaI	GACGC	2 cut(s)	459, 1298
HhaI	GCGC	1 cut(s)	1100
Hin1I	GRCGYC	1 cut(s)	1290
Hin1II	CATG	4 cut(s)	538, 569, 1050, 1165
Hin6I	GCGC	1 cut(s)	1098
HinP1I	GCGC	1 cut(s)	1098
HincII	GTYRAC	2 cut(s)	964, 1054
HindII	GTYRAC	2 cut(s)	964, 1054
HindIII	AAGCTT	1 cut(s)	1026
HinfI	GANTC	9 cut(s)	39, 188, 217, 402, 635, 659, 729, 861, 988
HpaII	CCGG	3 cut(s)	258, 1244, 1327
HphI	GGTGA	3 cut(s)	234, 389, 724
Hpy166II	GTNNAC	6 cut(s)	33, 439, 462, 709, 964, 1054
Hpy188I	TCNGA	5 cut(s)	187, 216, 222, 366, 1071
Hpy188III	TCNNGA	8 cut(s)	154, 557, 815, 888, 1137, 1255, 1335, 1379
Hpy8I	GTNNAC	6 cut(s)	33, 439, 462, 709, 964, 1054
HpyAV	CCTTC	5 cut(s)	485, 971, 1116, 1189, 1308
HpyCH4III	ACNGT	1 cut(s)	784
HpyCH4IV	ACGT	2 cut(s)	1221, 1260
HpyCH4V	TGCA	5 cut(s)	780, 1033, 1103, 1149, 1353
HpyF3I	CTNAG	6 cut(s)	43, 555, 857, 910, 1135, 1275
HpySE526I	ACGT	2 cut(s)	1221, 1260
Hsp92I	GRCGYC	1 cut(s)	1290
Hsp92II	CATG	4 cut(s)	538, 569, 1050, 1165
HspAI	GCGC	1 cut(s)	1098
Kzo9I	GATC	6 cut(s)	156, 222, 523, 694, 874, 1066
LmnI	GCTCC	3 cut(s)	550, 574, 1419
Lsp1109I	GCAGC	2 cut(s)	1087, 1365
LweI	GCATC	2 cut(s)	582, 856
MaeI	CTAG	1 cut(s)	620
MaeII	ACGT	2 cut(s)	1221, 1260
MaeIII	GTNAC	4 cut(s)	418, 796, 1190, 1246
MalI	GATC	6 cut(s)	158, 224, 525, 696, 876, 1068
MboI	GATC	6 cut(s)	156, 222, 523, 694, 874, 1066
MflI	RGATCY	2 cut(s)	523, 694
MlyI	GAGTC	1 cut(s)	48
MmeI	TCCRAC	1 cut(s)	610
MroXI	GAANNNNTTC	2 cut(s)	883, 1394
MseI	TTAA	8 cut(s)	164, 312, 338, 348, 528, 642, 690, 1020
MslI	CAYNNNNRTG	1 cut(s)	1116
MspI	CCGG	3 cut(s)	258, 1244, 1327
MspR9I	CCNGG	3 cut(s)	259, 574, 1371
Mva1269I	GAATGC	1 cut(s)	47
MvaI	CCWGG	2 cut(s)	574, 1371
MvnI	CGCG	1 cut(s)	1083
NciI	CCSGG	1 cut(s)	259
NdeII	GATC	6 cut(s)	156, 222, 523, 694, 874, 1066
NlaIII	CATG	4 cut(s)	538, 569, 1050, 1165
NlaIV	GGNNCC	3 cut(s)	552, 650, 1391
NspI	RCATGY	1 cut(s)	1165
PaeR7I	CTCGAG	1 cut(s)	1195
PctI	GAATGC	1 cut(s)	47
PdmI	GAANNNNTTC	2 cut(s)	883, 1394
PfeI	GAWTC	8 cut(s)	188, 217, 402, 635, 659, 729, 861, 988
PflFI	GACNNNGTC	1 cut(s)	1039
PinAI	ACCGGT	1 cut(s)	1243
PkrI	GCNGC	4 cut(s)	178, 299, 1102, 1355
PleI	GAGTC	1 cut(s)	47
PpsI	GAGTC	1 cut(s)	47
PshBI	ATTAAT	1 cut(s)	642
PsiI	TTATAA	1 cut(s)	774
Psp1406I	AACGTT	1 cut(s)	1260
Psp6I	CCWGG	2 cut(s)	572, 1369
PspEI	GGTNACC	1 cut(s)	1246
PspGI	CCWGG	2 cut(s)	572, 1369
PspN4I	GGNNCC	3 cut(s)	552, 650, 1391
PspXI	VCTCGAGB	1 cut(s)	1195
PsuI	RGATCY	2 cut(s)	523, 694
PsyI	GACNNNGTC	1 cut(s)	1039
RsaI	GTAC	3 cut(s)	461, 1224, 1280
RsaNI	GTAC	3 cut(s)	460, 1223, 1279
RseI	CAYNNNNRTG	1 cut(s)	1116
SaqAI	TTAA	8 cut(s)	164, 312, 338, 348, 528, 642, 690, 1020
SatI	GCNGC	4 cut(s)	177, 298, 1101, 1354
Sau3AI	GATC	6 cut(s)	156, 222, 523, 694, 874, 1066
SchI	GAGTC	1 cut(s)	48
ScrFI	CCNGG	3 cut(s)	259, 574, 1371
SfaNI	GCATC	2 cut(s)	582, 856
Sfr274I	CTCGAG	1 cut(s)	1195
SlaI	CTCGAG	1 cut(s)	1195
SmiMI	CAYNNNNRTG	1 cut(s)	1116
SmlI	CTYRAG	2 cut(s)	204, 1195
SmoI	CTYRAG	2 cut(s)	204, 1195
SsiI	CCGC	5 cut(s)	72, 177, 297, 1014, 1266
SspMI	CTAG	1 cut(s)	620
StyD4I	CCNGG	3 cut(s)	257, 572, 1369
TaaI	ACNGT	1 cut(s)	784
TaiI	ACGT	2 cut(s)	1224, 1263
TaqI	TCGA	9 cut(s)	159, 344, 405, 486, 864, 877, 1002, 1065, 1196
TatI	WGTACW	2 cut(s)	459, 1278
TauI	GCSGC	2 cut(s)	179, 300
TfiI	GAWTC	8 cut(s)	188, 217, 402, 635, 659, 729, 861, 988
Tru1I	TTAA	8 cut(s)	164, 312, 338, 348, 528, 642, 690, 1020
Tru9I	TTAA	8 cut(s)	164, 312, 338, 348, 528, 642, 690, 1020
TscAI	CASTG	2 cut(s)	787, 1123
TseI	GCWGC	2 cut(s)	1100, 1353
TspDTI	ATGAA	4 cut(s)	40, 504, 551, 980
TspGWI	ACGGA	2 cut(s)	749, 1323
TspRI	CASTG	2 cut(s)	787, 1123
Tth111I	GACNNNGTC	1 cut(s)	1039
VspI	ATTAAT	1 cut(s)	642
XapI	RAATTY	2 cut(s)	270, 788
XceI	RCATGY	1 cut(s)	1165
XhoI	CTCGAG	1 cut(s)	1195
XmiI	GTMKAC	1 cut(s)	708
XmnI	GAANNNNTTC	2 cut(s)	883, 1394
XspI	CTAG	1 cut(s)	620

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.